Prupe.1G266000_v2.0.a1

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000136
Physical Location & Seq
Forward (+)
27392057 .. 27393025
969 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G266000.1

Sequence Viewer

Length: 912 bp
ATGGACAAGAGTTGGATCGATTTAACTGATAGGTCATCGAATGAATATCTCAATGGGCTTGAAAGTTTTTTAGATTTTGCATTTGACAACAGCATGGGTGATACAAGGATTTATTGTCCCTGCAAAAAATGTTACAATCGTTACTTTGTTACAAGGGAGGTAGCAAGAGCACATATAATAGTTGATGGGTTTTGGTCAAAGTACAAAAATTGGACTCATGTTGTGGATGATGATATAATTGGAATGGTACATGAGGCATTTGAGCATCCAAATTTGGATTCTAGTATGAGGAATGATGGCTCAACAGAAAATGAATATGGTGAGGGGCCAAATGATGAGACTACAAATTATTTCAAATTGCTACAAGATGCAGAATGTCCTTTGTATCCGGGGTGTAAAAATTTCACTAAATTATCATTTATTGTTCGGTTGCTACATACAAAAGTACTTTGTGGATGGACCGACAAGTCAGTGACAATTTTGTTAACTCTTCTGAAAGAAGCTTTCCCCAATGAAGTACAACTACCAGATTCATATAACGAGGCTCAAAAGATAACAGATGACCTAGCTTTCACATACAATACATGGGATGCATGTCCCAATAATTGTATGTTATTTAGAAATGAGGATGAGAAACTTGAATCATGTGCTATTTGTCACGAATCTAGATATAAAAAAGTTGATGGGCAGCCTACAAATGTTGTGAATGGGAATAGAAAAATACCTGCAAAACAAGTAAGATACTTTCCATTGAAGCCAAGATTGCAAAGACTTTTTATGTCATCAAAAACTGCTTCGCATATGAGATGGCATGCAGAAGAGCGTACTGATGATGGTGTGCTAAGACACCCTGCTGACTCACCTGCATGGAAAGAATTTGATGCAAAGAATCCAGATTTTTCTAGTGAAGTT
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

304

Amino Acids

35.26

Weight (kDa)

5.43

Isoelectric Point (pI)

31.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 871
AasI GACNNNNNNGTC 1 cut(s) 466
Acc36I ACCTGC 2 cut(s) 733, 871
AclWI GGATC 1 cut(s) 23
AcsI RAATTY 3 cut(s) 271, 400, 875
AfaI GTAC 5 cut(s) 203, 249, 447, 519, 826
AgsI TTSAA 4 cut(s) 62, 355, 641, 754
AjuI GAANNNNNNNTTGG 2 cut(s) 262, 294
AluBI AGCT 2 cut(s) 503, 569
AluI AGCT 2 cut(s) 503, 569
Alw21I GWGCWC 1 cut(s) 172
Alw26I GTCTC 1 cut(s) 332
AlwI GGATC 1 cut(s) 23
AoxI GGCC 1 cut(s) 326
ApeKI GCWGC 1 cut(s) 688
ApoI RAATTY 3 cut(s) 271, 400, 875
AspS9I GGNCC 2 cut(s) 326, 459
AsuC2I CCSGG 1 cut(s) 390
AsuHPI GGTGA 3 cut(s) 110, 332, 852
AvaII GGWCC 1 cut(s) 459
BarI GAAGNNNNNNTAC 2 cut(s) 507, 539
Bbv12I GWGCWC 1 cut(s) 172
BbvI GCAGC 1 cut(s) 700
BccI CCATC 6 cut(s) 179, 290, 450, 677, 801, 827
BciVI GTATCC 1 cut(s) 396
BcnI CCSGG 1 cut(s) 390
BcoDI GTCTC 1 cut(s) 332
BfaI CTAG 4 cut(s) 282, 566, 666, 903
BfuAI ACCTGC 2 cut(s) 733, 871
BfuI GTATCC 1 cut(s) 396
BisI GCNGC 1 cut(s) 689
BlsI GCNGC 1 cut(s) 690
BmcAI AGTACT 1 cut(s) 447
Bme1390I CCNGG 1 cut(s) 390
Bme18I GGWCC 1 cut(s) 459
BmgT120I GGNCC 2 cut(s) 326, 459
BmiI GGNNCC 1 cut(s) 327
BmrFI CCNGG 1 cut(s) 390
BmsI GCATC 4 cut(s) 274, 358, 580, 871
BpuMI CCSGG 1 cut(s) 390
Bsa29I ATCGAT 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 389
BseCI ATCGAT 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 389
BseGI GGATG 5 cut(s) 232, 265, 461, 595, 634
BseXI GCAGC 1 cut(s) 700
BshFI GGCC 1 cut(s) 328
BshVI ATCGAT 1 cut(s) 18
BsiHKAI GWGCWC 1 cut(s) 172
BsiSI CCGG 1 cut(s) 389
BslFI GGGAC 2 cut(s) 102, 582
BsmAI GTCTC 1 cut(s) 332
BsmFI GGGAC 2 cut(s) 102, 582
BsnI GGCC 1 cut(s) 328
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 1 cut(s) 15
BspANI GGCC 1 cut(s) 328
BspDI ATCGAT 1 cut(s) 18
BspLI GGNNCC 1 cut(s) 327
BspMI ACCTGC 2 cut(s) 733, 871
BspPI GGATC 1 cut(s) 23
BspQI GCTCTTC 1 cut(s) 813
BssECI CCNNGG 1 cut(s) 389
BssMI GATC 1 cut(s) 15
Bst6I CTCTTC 2 cut(s) 495, 813
BstC8I GCNNGC 1 cut(s) 813
BstDEI CTNAG 1 cut(s) 842
BstF5I GGATG 5 cut(s) 232, 265, 461, 595, 634
BstKTI GATC 1 cut(s) 18
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 1 cut(s) 15
BstMWI GCNNNNNNNGC 1 cut(s) 763
BstNSI RCATGY 2 cut(s) 597, 815
BstSCI CCNGG 1 cut(s) 388
BstV1I GCAGC 1 cut(s) 700
Bsu15I ATCGAT 1 cut(s) 18
BsuI GTATCC 1 cut(s) 396
BsuRI GGCC 1 cut(s) 328
BsuTUI ATCGAT 1 cut(s) 18
BtsCI GGATG 5 cut(s) 232, 265, 461, 595, 634
BtsIMutI CAGTG 1 cut(s) 477
BveI ACCTGC 2 cut(s) 733, 871
Cac8I GCNNGC 1 cut(s) 813
Cfr13I GGNCC 2 cut(s) 326, 459
ClaI ATCGAT 1 cut(s) 18
Csp6I GTAC 5 cut(s) 202, 248, 446, 518, 825
CviAII CATG 8 cut(s) 94, 218, 251, 585, 594, 645, 812, 867
CviJI RGCY 8 cut(s) 58, 300, 328, 503, 545, 569, 691, 757
CviKI_1 RGCY 8 cut(s) 58, 300, 328, 503, 545, 569, 691, 757
CviQI GTAC 5 cut(s) 202, 248, 446, 518, 825
DdeI CTNAG 1 cut(s) 842
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
DrdI GACNNNNNNGTC 1 cut(s) 466
DseDI GACNNNNNNGTC 1 cut(s) 466
Eam1104I CTCTTC 2 cut(s) 495, 813
EarI CTCTTC 2 cut(s) 495, 813
Eco47I GGWCC 1 cut(s) 459
EcoT22I ATGCAT 1 cut(s) 595
FaeI CATG 8 cut(s) 97, 221, 254, 588, 597, 648, 815, 870
FaqI GGGAC 2 cut(s) 102, 582
FatI CATG 8 cut(s) 93, 217, 250, 584, 593, 644, 811, 866
FauNDI CATATG 1 cut(s) 801
Fnu4HI GCNGC 1 cut(s) 689
FokI GGATG 5 cut(s) 239, 252, 468, 602, 641
Fsp4HI GCNGC 1 cut(s) 689
FspBI CTAG 4 cut(s) 282, 566, 666, 903
GluI GCNGC 1 cut(s) 689
HaeIII GGCC 1 cut(s) 328
HapII CCGG 1 cut(s) 389
Hin1II CATG 8 cut(s) 97, 221, 254, 588, 597, 648, 815, 870
HincII GTYRAC 1 cut(s) 486
HindII GTYRAC 1 cut(s) 486
HindIII AAGCTT 1 cut(s) 501
HinfI GANTC 7 cut(s) 214, 278, 530, 641, 662, 857, 889
HpaI GTTAAC 1 cut(s) 486
HpaII CCGG 1 cut(s) 389
HphI GGTGA 3 cut(s) 110, 332, 852
Hpy166II GTNNAC 1 cut(s) 486
Hpy188I TCNGA 1 cut(s) 495
Hpy188III TCNNGA 3 cut(s) 659, 666, 893
Hpy8I GTNNAC 1 cut(s) 486
HpyCH4V TGCA 9 cut(s) 80, 123, 371, 593, 728, 766, 815, 866, 884
HpyF10VI GCNNNNNNNGC 1 cut(s) 763
HpyF3I CTNAG 1 cut(s) 842
Hsp92II CATG 8 cut(s) 97, 221, 254, 588, 597, 648, 815, 870
KspAI GTTAAC 1 cut(s) 486
Kzo9I GATC 1 cut(s) 15
LguI GCTCTTC 1 cut(s) 813
LpnPI CCDG 7 cut(s) 133, 402, 540, 738, 864, 876, 906
Lsp1109I GCAGC 1 cut(s) 700
LweI GCATC 4 cut(s) 274, 358, 580, 871
MaeI CTAG 4 cut(s) 282, 566, 666, 903
MaeIII GTNAC 5 cut(s) 131, 140, 148, 472, 656
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 2 cut(s) 482, 830
MhlI GDGCHC 1 cut(s) 172
MlyI GAGTC 2 cut(s) 208, 851
MnlI CCTC 6 cut(s) 151, 247, 282, 316, 535, 619
Mph1103I ATGCAT 1 cut(s) 595
MseI TTAA 2 cut(s) 23, 485
MslI CAYNNNNRTG 1 cut(s) 865
MspI CCGG 1 cut(s) 389
MspR9I CCNGG 1 cut(s) 390
MwoI GCNNNNNNNGC 1 cut(s) 763
NciI CCSGG 1 cut(s) 390
NdeI CATATG 1 cut(s) 801
NdeII GATC 1 cut(s) 15
NlaIII CATG 8 cut(s) 97, 221, 254, 588, 597, 648, 815, 870
NlaIV GGNNCC 1 cut(s) 327
NmuCI GTSAC 2 cut(s) 472, 656
NsiI ATGCAT 1 cut(s) 595
NspI RCATGY 2 cut(s) 597, 815
PaeI GCATGC 1 cut(s) 815
PaqCI CACCTGC 1 cut(s) 871
PciSI GCTCTTC 1 cut(s) 813
PfeI GAWTC 5 cut(s) 278, 530, 641, 662, 889
PkrI GCNGC 1 cut(s) 690
PleI GAGTC 2 cut(s) 208, 851
PpsI GAGTC 2 cut(s) 208, 851
PspN4I GGNNCC 1 cut(s) 327
PspPI GGNCC 2 cut(s) 326, 459
RsaI GTAC 5 cut(s) 203, 249, 447, 519, 826
RsaNI GTAC 5 cut(s) 202, 248, 446, 518, 825
RseI CAYNNNNRTG 1 cut(s) 865
SapI GCTCTTC 1 cut(s) 813
SaqAI TTAA 2 cut(s) 23, 485
SatI GCNGC 1 cut(s) 689
Sau3AI GATC 1 cut(s) 15
Sau96I GGNCC 2 cut(s) 326, 459
ScaI AGTACT 1 cut(s) 447
SchI GAGTC 2 cut(s) 208, 851
ScrFI CCNGG 1 cut(s) 390
SduI GDGCHC 1 cut(s) 172
SetI ASST 7 cut(s) 35, 162, 505, 567, 571, 727, 865
SfaNI GCATC 4 cut(s) 274, 358, 580, 871
SinI GGWCC 1 cut(s) 459
SmiMI CAYNNNNRTG 1 cut(s) 865
SphI GCATGC 1 cut(s) 815
SspMI CTAG 4 cut(s) 282, 566, 666, 903
StyD4I CCNGG 1 cut(s) 388
TaqI TCGA 2 cut(s) 18, 38
TaqII GACCGA 1 cut(s) 476
TatI WGTACW 3 cut(s) 201, 445, 517
TfiI GAWTC 5 cut(s) 278, 530, 641, 662, 889
Tru1I TTAA 2 cut(s) 23, 485
Tru9I TTAA 2 cut(s) 23, 485
TscAI CASTG 1 cut(s) 477
TseFI GTSAC 2 cut(s) 472, 656
TseI GCWGC 1 cut(s) 688
Tsp45I GTSAC 2 cut(s) 472, 656
TspDTI ATGAA 4 cut(s) 57, 327, 522, 528
TspRI CASTG 1 cut(s) 477
VpaK11BI GGWCC 1 cut(s) 459
XapI RAATTY 3 cut(s) 271, 400, 875
XbaI TCTAGA 1 cut(s) 665
XceI RCATGY 2 cut(s) 597, 815
XspI CTAG 4 cut(s) 282, 566, 666, 903
ZrmI AGTACT 1 cut(s) 447
Zsp2I ATGCAT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.