Rw1G015860

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000136
Physical Location & Seq
Forward (+)
35349818 .. 35352314
2497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G015860.1

Sequence Viewer

Length: 1026 bp
ATGAAGAAAAGGAAGATTGGTCGACCGCGCACCATGTCTGAATATTTGAGTTCCAGCAGCTCTCAATCTTCAAGCAACAGCATTTCCTCATCACAACAACCATCACCGTCTTCAAGATTGCCACCACCATCTCCTTCCCCTCCACCTCCTCCTCCACCTCCTCCACCTCCTCCGCCACCCCCTGCACTACCATCTCCACCAGCAGAGATGGAAGTACAAGCTACTGCTGAAAGTTCCAGAGGTCAAAATAAGGGTATCTCAGAATGGAATACTGGAGTTAAAGTCGAAATTAAGTTTGATTCTACCTTCCAACCTTTGGGAGATAGGGCTAACCAATTAAAGTCGCAGTTAGGACAAATTGTAAGGGATGGGCAAAGAATTCCCCTTACAATAATTGATTGGAAGTCTGTTGGAGCTGAAGTGAAAGATGGAATATGGAAAGAAGTTAAGAAGATAGCAAGAAGAAATTCTATCAATAGGGAGCTTCGTGGACCAGTTCATACTACTGGTCGAAAATACTTTGCTCAATTACGATTTGAGATGGAGCAAAATGGAGAAGAAATTGATAAGATGAATGTGTGGAAAAAAGCACGAGACCAGTCAAAACCAGAAGTAGTTGAAGTCATTGAAGAATATGAAAAACGACTTTTATTAGAACCTAAGGACCAAAGGAACCTTCAGGCTGTCAAAGACCGTATATTTCATGAATTGATTGGAGAGGATGGCCATGGATATTGTCGCACCTATGGATCTGCCGTGCCTAGAAGATTTGTCTACCCACATGCACCAAATTCCTCTGAAACCACTGATGATATAATACAGAAAGTAACTGAATCTGTGGCAAAAAAGTTTCAGGATCAGCTTAATATGCTACAAGCTCGAATTGATTTTTTGGAGAACAAAGAGAAGAGAGGCATAGATCAAAATGGACAGGTTTCAGATGCAACTAGTGACCATGAAATTCGGAGGGAGTCTGTAGGAGAAGAAGGGAATCCAGATTCAATCAGTGATAGAGCAATGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

341

Amino Acids

38.28

Weight (kDa)

8.75

Isoelectric Point (pI)

63.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 148 - 252 2e-12 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 316
AccI GTMKAC 2 cut(s) 22, 774
AccII CGCG 1 cut(s) 28
AciI CCGC 2 cut(s) 26, 173
AclWI GGATC 2 cut(s) 757, 864
AcoI YGGCCR 1 cut(s) 724
AcsI RAATTY 4 cut(s) 378, 466, 790, 960
AcuI CTGAAG 2 cut(s) 438, 662
AfaI GTAC 1 cut(s) 216
AfiI CCNNNNNNNGG 1 cut(s) 316
AgsI TTSAA 5 cut(s) 72, 114, 620, 629, 1002
AhlI ACTAGT 1 cut(s) 947
AjuI GAANNNNNNNTTGG 2 cut(s) 660, 692
AluBI AGCT 6 cut(s) 60, 221, 416, 484, 862, 878
AluI AGCT 6 cut(s) 60, 221, 416, 484, 862, 878
Alw26I GTCTC 1 cut(s) 588
AlwI GGATC 2 cut(s) 757, 864
AoxI GGCC 1 cut(s) 724
ApeKI GCWGC 1 cut(s) 57
ApoI RAATTY 4 cut(s) 378, 466, 790, 960
Asp700I GAANNNNTTC 1 cut(s) 466
AspLEI GCGC 1 cut(s) 30
AspS9I GGNCC 2 cut(s) 491, 664
AsuHPI GGTGA 1 cut(s) 96
AvaII GGWCC 2 cut(s) 491, 664
AxyI CCTNAGG 1 cut(s) 660
BalI TGGCCA 1 cut(s) 726
BauI CACGAG 1 cut(s) 591
BbsI GAAGAC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 69
BccI CCATC 8 cut(s) 109, 136, 199, 202, 362, 422, 535, 716
BceAI ACGGC 1 cut(s) 740
BcoDI GTCTC 1 cut(s) 588
BcuI ACTAGT 1 cut(s) 947
BfaI CTAG 2 cut(s) 762, 948
BfmI CTRYAG 1 cut(s) 975
BisI GCNGC 1 cut(s) 58
BlsI GCNGC 1 cut(s) 59
Bme18I GGWCC 2 cut(s) 491, 664
BmgT120I GGNCC 2 cut(s) 491, 664
BmiI GGNNCC 1 cut(s) 674
BmsI GCATC 1 cut(s) 931
BpiI GAAGAC 1 cut(s) 102
BpmI CTGGAG 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 588
BsaJI CCNNGG 1 cut(s) 727
BsaXI ACNNNNNCTCC 4 cut(s) 267, 297, 405, 435
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse1I ACTGG 4 cut(s) 277, 494, 511, 598
Bse21I CCTNAGG 1 cut(s) 660
Bse3DI GCAATG 1 cut(s) 1023
BseDI CCNNGG 1 cut(s) 727
BseGI GGATG 2 cut(s) 373, 727
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMI GCAATG 1 cut(s) 1023
BseMII CTCAG 1 cut(s) 273
BseNI ACTGG 4 cut(s) 277, 494, 511, 598
BseRI GAGGAG 4 cut(s) 138, 141, 150, 159
BseXI GCAGC 1 cut(s) 69
BsgI GTGCAG 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 28
Bsh1285I CGRYCG 1 cut(s) 26
BshFI GGCC 1 cut(s) 726
BsiEI CGRYCG 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 316
BsmAI GTCTC 1 cut(s) 588
BsnI GGCC 1 cut(s) 726
Bso31I GGTCTC 1 cut(s) 588
Bsp143I GATC 3 cut(s) 749, 856, 919
Bsp19I CCATGG 1 cut(s) 727
BspACI CCGC 2 cut(s) 26, 173
BspANI GGCC 1 cut(s) 726
BspCNI CTCAG 1 cut(s) 272
BspFNI CGCG 1 cut(s) 28
BspHI TCATGA 1 cut(s) 703
BspLI GGNNCC 1 cut(s) 674
BspPI GGATC 2 cut(s) 757, 864
BspTNI GGTCTC 1 cut(s) 588
BsrDI GCAATG 1 cut(s) 1023
BsrI ACTGG 4 cut(s) 277, 494, 511, 598
BssECI CCNNGG 1 cut(s) 727
BssMI GATC 3 cut(s) 749, 856, 919
BssSI CACGAG 1 cut(s) 591
BssT1I CCWWGG 1 cut(s) 727
Bst2BI CACGAG 1 cut(s) 591
Bst4CI ACNGT 2 cut(s) 108, 695
Bst6I CTCTTC 1 cut(s) 902
BstDEI CTNAG 2 cut(s) 259, 660
BstDSI CCRYGG 1 cut(s) 727
BstF5I GGATG 2 cut(s) 373, 727
BstFNI CGCG 1 cut(s) 28
BstHHI GCGC 1 cut(s) 30
BstKTI GATC 3 cut(s) 752, 859, 922
BstMAI GTCTC 1 cut(s) 588
BstMBI GATC 3 cut(s) 749, 856, 919
BstMCI CGRYCG 1 cut(s) 26
BstMWI GCNNNNNNNGC 1 cut(s) 868
BstNSI RCATGY 1 cut(s) 785
BstSFI CTRYAG 1 cut(s) 975
BstUI CGCG 1 cut(s) 28
BstV1I GCAGC 1 cut(s) 69
BstV2I GAAGAC 1 cut(s) 102
BstX2I RGATCY 1 cut(s) 749
BstYI RGATCY 1 cut(s) 749
Bsu36I CCTNAGG 1 cut(s) 660
BsuRI GGCC 1 cut(s) 726
BtgI CCRYGG 1 cut(s) 727
BtsCI GGATG 2 cut(s) 373, 727
BtsIMutI CAGTG 2 cut(s) 804, 1012
CciI TCATGA 1 cut(s) 703
CfoI GCGC 1 cut(s) 30
Cfr13I GGNCC 2 cut(s) 491, 664
Csp6I GTAC 1 cut(s) 215
CviAII CATG 5 cut(s) 34, 704, 728, 782, 956
CviQI GTAC 1 cut(s) 215
DdeI CTNAG 2 cut(s) 259, 660
DpnI GATC 3 cut(s) 751, 858, 921
DpnII GATC 3 cut(s) 749, 856, 919
EaeI YGGCCR 1 cut(s) 724
Eam1104I CTCTTC 1 cut(s) 902
EarI CTCTTC 1 cut(s) 902
EciI GGCGGA 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 727
Eco31I GGTCTC 1 cut(s) 588
Eco47I GGWCC 2 cut(s) 491, 664
Eco57I CTGAAG 2 cut(s) 438, 662
Eco81I CCTNAGG 1 cut(s) 660
EcoRI GAATTC 1 cut(s) 378
EcoT14I CCWWGG 1 cut(s) 727
ErhI CCWWGG 1 cut(s) 727
FaeI CATG 5 cut(s) 37, 707, 731, 785, 959
FatI CATG 5 cut(s) 33, 703, 727, 781, 955
FblI GTMKAC 2 cut(s) 22, 774
Fnu4HI GCNGC 1 cut(s) 58
FokI GGATG 2 cut(s) 380, 734
Fsp4HI GCNGC 1 cut(s) 58
FspBI CTAG 2 cut(s) 762, 948
GlaI GCGC 1 cut(s) 29
GluI GCNGC 1 cut(s) 58
GsuI CTGGAG 1 cut(s) 294
HaeIII GGCC 1 cut(s) 726
HhaI GCGC 1 cut(s) 30
Hin1II CATG 5 cut(s) 37, 707, 731, 785, 959
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HincII GTYRAC 1 cut(s) 23
HindII GTYRAC 1 cut(s) 23
HinfI GANTC 5 cut(s) 299, 833, 971, 991, 998
HphI GGTGA 1 cut(s) 96
Hpy166II GTNNAC 3 cut(s) 23, 491, 775
Hpy188I TCNGA 5 cut(s) 40, 262, 799, 940, 966
Hpy188III TCNNGA 5 cut(s) 114, 237, 704, 854, 995
Hpy8I GTNNAC 3 cut(s) 23, 491, 775
HpyAV CCTTC 4 cut(s) 144, 316, 686, 980
HpyCH4III ACNGT 2 cut(s) 108, 695
HpyCH4V TGCA 3 cut(s) 185, 785, 944
HpyF10VI GCNNNNNNNGC 1 cut(s) 868
HpyF3I CTNAG 2 cut(s) 259, 660
Hsp92II CATG 5 cut(s) 37, 707, 731, 785, 959
HspAI GCGC 1 cut(s) 28
Kzo9I GATC 3 cut(s) 749, 856, 919
LmnI GCTCC 3 cut(s) 413, 481, 544
Lsp1109I GCAGC 1 cut(s) 69
LweI GCATC 1 cut(s) 931
MaeI CTAG 2 cut(s) 762, 948
MaeIII GTNAC 2 cut(s) 826, 950
MalI GATC 3 cut(s) 751, 858, 921
MboI GATC 3 cut(s) 749, 856, 919
MflI RGATCY 1 cut(s) 749
MlsI TGGCCA 1 cut(s) 726
MluNI TGGCCA 1 cut(s) 726
MlyI GAGTC 1 cut(s) 980
MmeI TCCRAC 2 cut(s) 334, 391
Mox20I TGGCCA 1 cut(s) 726
MroXI GAANNNNTTC 1 cut(s) 466
MscI TGGCCA 1 cut(s) 726
MseI TTAA 5 cut(s) 279, 291, 338, 447, 864
Msp20I TGGCCA 1 cut(s) 726
MvnI CGCG 1 cut(s) 28
MwoI GCNNNNNNNGC 1 cut(s) 868
NcoI CCATGG 1 cut(s) 727
NdeII GATC 3 cut(s) 749, 856, 919
NlaIII CATG 5 cut(s) 37, 707, 731, 785, 959
NlaIV GGNNCC 1 cut(s) 674
NmuCI GTSAC 1 cut(s) 950
NspI RCATGY 1 cut(s) 785
PagI TCATGA 1 cut(s) 703
PdmI GAANNNNTTC 1 cut(s) 466
PfeI GAWTC 4 cut(s) 299, 833, 991, 998
PflMI CCANNNNNTGG 1 cut(s) 316
PkrI GCNGC 1 cut(s) 59
PleI GAGTC 1 cut(s) 979
PpsI GAGTC 1 cut(s) 979
PspN4I GGNNCC 1 cut(s) 674
PspPI GGNCC 2 cut(s) 491, 664
PsuI RGATCY 1 cut(s) 749
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
SalI GTCGAC 1 cut(s) 21
SaqAI TTAA 5 cut(s) 279, 291, 338, 447, 864
SatI GCNGC 1 cut(s) 58
Sau3AI GATC 3 cut(s) 749, 856, 919
Sau96I GGNCC 2 cut(s) 491, 664
SchI GAGTC 1 cut(s) 980
SfaNI GCATC 1 cut(s) 931
SfcI CTRYAG 1 cut(s) 975
SinI GGWCC 2 cut(s) 491, 664
SpeI ACTAGT 1 cut(s) 947
SsiI CCGC 2 cut(s) 26, 173
SspI AATATT 1 cut(s) 44
SspMI CTAG 2 cut(s) 762, 948
StyI CCWWGG 1 cut(s) 727
TaaI ACNGT 2 cut(s) 108, 695
TaqI TCGA 4 cut(s) 22, 285, 511, 880
TatI WGTACW 1 cut(s) 214
TfiI GAWTC 4 cut(s) 299, 833, 991, 998
Tru1I TTAA 5 cut(s) 279, 291, 338, 447, 864
Tru9I TTAA 5 cut(s) 279, 291, 338, 447, 864
TscAI CASTG 2 cut(s) 811, 1012
TseFI GTSAC 1 cut(s) 950
TseI GCWGC 1 cut(s) 57
Tsp45I GTSAC 1 cut(s) 950
TspDTI ATGAA 7 cut(s) 17, 488, 587, 651, 692, 720, 972
TspRI CASTG 2 cut(s) 811, 1012
Van91I CCANNNNNTGG 1 cut(s) 316
VpaK11BI GGWCC 2 cut(s) 491, 664
XapI RAATTY 4 cut(s) 378, 466, 790, 960
XceI RCATGY 1 cut(s) 785
XmiI GTMKAC 2 cut(s) 22, 774
XmnI GAANNNNTTC 1 cut(s) 466
XspI CTAG 2 cut(s) 762, 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.