RchiOBHm_Chr7g0222641

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000136
Physical Location & Seq
Reverse (-)
44171798 .. 44181423
9626 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19929

Sequence Viewer

Length: 1098 bp
ATGAAGAGAACAAGACAAGGAGGCCGACCTCGTACCATGTCTCAACTCTTGGAAGAAACTTCATCATGTTTTGGAAGCACAGGTCGTAGCGCAAACGAATCAGCACAGCCACCTCCTCCAGCACCAGCAGAGCAAGTCAATACGCCAACAAGTAAAGTCACAGGAGGACAGAGCAAAGGCATTCCAGAATGGAATATAGGTGTCAAAGTACATGTTCAATTTAATGGAATCAATTTCCAGCCGGTGGGAGAAAGGGCAGGTCAGCTTAAGTCACAATTGGGTCAGATAGTACGAAATGGCCATAGAGTTCCACTAAATATTCTTGACTGGAAGAAAGTCGGTAATGATGTGAAGGAAGAAATTTGGGAAGAGGTTAAGCAATGGTCTGAGCTTGTTGCATATTGGAGTAGTGAGGATGCAAAGGTGATAGCAGAAAGAAATTCAATAAACCGAGAGCTGCGTGGCCCATGTCACAAGACCGGTAGAAAGCATTTTGCCCAAGTGCGATATGAGATGGAAAAAGCTGGAGAACCAGTTGATAAGTTTAGTGTCTGGAAGAGAACACGTGACTTAAATGATCACCTTGTGCAAGAGTTCATTAAATCATATGAGGAGAAACTTAGAAAGGAGTCGGAGGAGGATCAGAACTTGACTAGTGTTAAAGATCGAATTTTCCACTCTTTGATGGGAGATGATGGTCATGGGTATTGTCATACTTTTGGAGCTGGTGTGCCTCGTAATCTAGTATATCCAAAGGAATCAAAGATATCTCAAAGCACAGATGATCTCGTACAAAAAATCACTGAACAAGTGCGTCAAGAGTTTCAACTGCAGCTTCAGCAACTACATGCTCGAATTGATTTTCTGCAGAATAAGGACAGTAGCACAGAGTCTCCTAGACAGGTTGCTGATGCAACTAGCGGGCATGAAATTTTGAGGGAGTCTATAGGAGATGAAATAACTCCGAATGTAAATAGTGACCAGCCATTGTTGGAGCAGAATTCTCTAGTAACATCCCCTTCACAAAATGGATCTGAAAGGGTTCTCATGGCAAAAAGAGCAAAGCAAATGAAAGCAAGTGCAAAGCTCACAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23 Transposase_24

Protein Analysis

365

Amino Acids

41.23

Weight (kDa)

8.58

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 126 - 244 7.3e-21 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 248
AccB7I CCANNNNNTGG 1 cut(s) 244
AciI CCGC 1 cut(s) 921
AclWI GGATC 2 cut(s) 648, 1039
AcoI YGGCCR 1 cut(s) 298
AcsI RAATTY 5 cut(s) 360, 439, 669, 930, 1000
AcuI CTGAAG 1 cut(s) 821
AcvI CACGTG 1 cut(s) 566
AdeI CACNNNGTG 1 cut(s) 586
AfaI GTAC 4 cut(s) 34, 210, 291, 792
AfiI CCNNNNNNNGG 1 cut(s) 244
AflII CTTAAG 1 cut(s) 266
AflIII ACRYGT 2 cut(s) 211, 563
AgeI ACCGGT 1 cut(s) 479
AgsI TTSAA 3 cut(s) 218, 444, 827
AhlI ACTAGT 1 cut(s) 653
AluBI AGCT 7 cut(s) 265, 391, 457, 524, 725, 835, 1087
AluI AGCT 7 cut(s) 265, 391, 457, 524, 725, 835, 1087
Alw26I GTCTC 2 cut(s) 45, 897
AlwI GGATC 2 cut(s) 648, 1039
AoxI GGCC 3 cut(s) 22, 298, 463
ApeKI GCWGC 2 cut(s) 457, 832
ApoI RAATTY 5 cut(s) 360, 439, 669, 930, 1000
AsiGI ACCGGT 1 cut(s) 479
Asp700I GAANNNNTTC 1 cut(s) 1041
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 464
AsuHPI GGTGA 2 cut(s) 436, 572
BalI TGGCCA 1 cut(s) 300
BbrPI CACGTG 1 cut(s) 566
BbvI GCAGC 2 cut(s) 444, 844
BccI CCATC 3 cut(s) 508, 679, 689
BclI TGATCA 1 cut(s) 577
BcoDI GTCTC 2 cut(s) 45, 897
BcuI ACTAGT 1 cut(s) 653
BfaI CTAG 5 cut(s) 654, 743, 897, 918, 1007
BfmI CTRYAG 3 cut(s) 830, 866, 945
BfrI CTTAAG 1 cut(s) 266
BfuAI ACCTGC 1 cut(s) 248
BisI GCNGC 2 cut(s) 458, 833
BlsI GCNGC 2 cut(s) 459, 834
BmgT120I GGNCC 1 cut(s) 464
BmsI GCATC 2 cut(s) 406, 901
BpmI CTGGAG 2 cut(s) 102, 546
BsaAI YACGTR 1 cut(s) 566
BsaWI WCCGGW 1 cut(s) 479
BsaXI ACNNNNNCTCC 6 cut(s) 519, 549, 714, 744, 877, 907
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse118I RCCGGY 2 cut(s) 241, 479
Bse1I ACTGG 2 cut(s) 332, 533
Bse3DI GCAATG 1 cut(s) 386
BseGI GGATG 2 cut(s) 421, 1013
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMI GCAATG 1 cut(s) 386
BseMII CTCAG 1 cut(s) 378
BseNI ACTGG 2 cut(s) 332, 533
BseRI GAGGAG 3 cut(s) 105, 626, 650
BseXI GCAGC 2 cut(s) 444, 844
BshFI GGCC 3 cut(s) 24, 300, 465
BshTI ACCGGT 1 cut(s) 479
BsiSI CCGG 2 cut(s) 242, 480
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 2 cut(s) 45, 897
BsmI GAATGC 1 cut(s) 180
BsnI GGCC 3 cut(s) 24, 300, 465
Bsp143I GATC 5 cut(s) 577, 640, 664, 784, 1031
BspACI CCGC 1 cut(s) 921
BspANI GGCC 3 cut(s) 24, 300, 465
BspCNI CTCAG 1 cut(s) 379
BspMAI CTGCAG 2 cut(s) 834, 870
BspMI ACCTGC 1 cut(s) 248
BspPI GGATC 2 cut(s) 648, 1039
BspTI CTTAAG 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 386
BsrFI RCCGGY 2 cut(s) 241, 479
BsrI ACTGG 2 cut(s) 332, 533
BssAI RCCGGY 2 cut(s) 241, 479
BssMI GATC 5 cut(s) 577, 640, 664, 784, 1031
Bst4CI ACNGT 1 cut(s) 881
Bst6I CTCTTC 2 cut(s) 363, 551
BstAFI CTTAAG 1 cut(s) 266
BstBAI YACGTR 1 cut(s) 566
BstC8I GCNNGC 1 cut(s) 923
BstDEI CTNAG 2 cut(s) 387, 620
BstF5I GGATG 2 cut(s) 421, 1013
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 5 cut(s) 580, 643, 667, 787, 1034
BstMAI GTCTC 2 cut(s) 45, 897
BstMBI GATC 5 cut(s) 577, 640, 664, 784, 1031
BstMWI GCNNNNNNNGC 2 cut(s) 838, 1058
BstNSI RCATGY 2 cut(s) 215, 851
BstSFI CTRYAG 3 cut(s) 830, 866, 945
BstV1I GCAGC 2 cut(s) 444, 844
BstX2I RGATCY 1 cut(s) 1031
BstYI RGATCY 1 cut(s) 1031
BsuRI GGCC 3 cut(s) 24, 300, 465
BtsCI GGATG 2 cut(s) 421, 1013
BtsIMutI CAGTG 1 cut(s) 801
BveI ACCTGC 1 cut(s) 248
Cac8I GCNNGC 1 cut(s) 923
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 2 cut(s) 241, 479
Cfr13I GGNCC 1 cut(s) 464
CseI GACGC 1 cut(s) 803
Csp6I GTAC 4 cut(s) 33, 209, 290, 791
CspAI ACCGGT 1 cut(s) 479
CviAII CATG 8 cut(s) 37, 66, 212, 468, 701, 848, 926, 1048
CviQI GTAC 4 cut(s) 33, 209, 290, 791
DdeI CTNAG 2 cut(s) 387, 620
DpnI GATC 5 cut(s) 579, 642, 666, 786, 1033
DpnII GATC 5 cut(s) 577, 640, 664, 784, 1031
DraIII CACNNNGTG 1 cut(s) 586
EaeI YGGCCR 1 cut(s) 298
Eam1104I CTCTTC 2 cut(s) 363, 551
EarI CTCTTC 2 cut(s) 363, 551
Eco32I GATATC 1 cut(s) 768
Eco57I CTGAAG 1 cut(s) 821
Eco72I CACGTG 1 cut(s) 566
EcoRI GAATTC 1 cut(s) 1000
EcoRV GATATC 1 cut(s) 768
FaeI CATG 8 cut(s) 40, 69, 215, 471, 704, 851, 929, 1051
FatI CATG 8 cut(s) 36, 65, 211, 467, 700, 847, 925, 1047
FauI CCCGC 1 cut(s) 914
FauNDI CATATG 1 cut(s) 607
FbaI TGATCA 1 cut(s) 577
Fnu4HI GCNGC 2 cut(s) 458, 833
FokI GGATG 2 cut(s) 428, 1000
Fsp4HI GCNGC 2 cut(s) 458, 833
FspBI CTAG 5 cut(s) 654, 743, 897, 918, 1007
GlaI GCGC 1 cut(s) 91
GluI GCNGC 2 cut(s) 458, 833
GsuI CTGGAG 2 cut(s) 102, 546
HaeIII GGCC 3 cut(s) 24, 300, 465
HapII CCGG 2 cut(s) 242, 480
HgaI GACGC 1 cut(s) 803
HhaI GCGC 1 cut(s) 92
Hin1II CATG 8 cut(s) 40, 69, 215, 471, 704, 851, 929, 1051
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HinfI GANTC 6 cut(s) 98, 228, 629, 758, 890, 941
HpaII CCGG 2 cut(s) 242, 480
HphI GGTGA 2 cut(s) 436, 572
Hpy188I TCNGA 6 cut(s) 285, 388, 634, 645, 966, 1036
Hpy188III TCNNGA 4 cut(s) 185, 323, 553, 818
HpyAV CCTTC 2 cut(s) 346, 1029
HpyCH4III ACNGT 1 cut(s) 881
HpyCH4IV ACGT 1 cut(s) 565
HpyCH4V TGCA 7 cut(s) 398, 419, 589, 832, 868, 914, 1082
HpyF10VI GCNNNNNNNGC 2 cut(s) 838, 1058
HpyF3I CTNAG 2 cut(s) 387, 620
HpySE526I ACGT 1 cut(s) 565
Hsp92II CATG 8 cut(s) 40, 69, 215, 471, 704, 851, 929, 1051
HspAI GCGC 1 cut(s) 90
Ksp22I TGATCA 1 cut(s) 577
Kzo9I GATC 5 cut(s) 577, 640, 664, 784, 1031
LmnI GCTCC 2 cut(s) 722, 994
Lsp1109I GCAGC 2 cut(s) 444, 844
LweI GCATC 2 cut(s) 406, 901
MaeI CTAG 5 cut(s) 654, 743, 897, 918, 1007
MaeII ACGT 1 cut(s) 565
MaeIII GTNAC 6 cut(s) 157, 270, 470, 566, 977, 1009
MalI GATC 5 cut(s) 579, 642, 666, 786, 1033
MboI GATC 5 cut(s) 577, 640, 664, 784, 1031
MboII GAAGA 6 cut(s) 16, 65, 343, 368, 380, 568
MfeI CAATTG 1 cut(s) 275
MflI RGATCY 1 cut(s) 1031
MlsI TGGCCA 1 cut(s) 300
MluCI AATT 9 cut(s) 218, 232, 275, 360, 439, 669, 855, 930, 1000
MluNI TGGCCA 1 cut(s) 300
MlyI GAGTC 3 cut(s) 638, 899, 950
MmeI TCCRAC 2 cut(s) 612, 972
Mox20I TGGCCA 1 cut(s) 300
MroXI GAANNNNTTC 1 cut(s) 1041
MscI TGGCCA 1 cut(s) 300
MseI TTAA 6 cut(s) 222, 267, 375, 572, 600, 660
Msp20I TGGCCA 1 cut(s) 300
MspCI CTTAAG 1 cut(s) 266
MspI CCGG 2 cut(s) 242, 480
MunI CAATTG 1 cut(s) 275
Mva1269I GAATGC 1 cut(s) 180
MwoI GCNNNNNNNGC 2 cut(s) 838, 1058
NdeI CATATG 1 cut(s) 607
NdeII GATC 5 cut(s) 577, 640, 664, 784, 1031
NlaIII CATG 8 cut(s) 40, 69, 215, 471, 704, 851, 929, 1051
NmuCI GTSAC 5 cut(s) 157, 270, 470, 566, 977
NspI RCATGY 2 cut(s) 215, 851
PciI ACATGT 1 cut(s) 211
PctI GAATGC 1 cut(s) 180
PdmI GAANNNNTTC 1 cut(s) 1041
PfeI GAWTC 3 cut(s) 98, 228, 758
PflMI CCANNNNNTGG 1 cut(s) 244
PinAI ACCGGT 1 cut(s) 479
PkrI GCNGC 2 cut(s) 459, 834
PleI GAGTC 3 cut(s) 637, 898, 949
PmaCI CACGTG 1 cut(s) 566
PmlI CACGTG 1 cut(s) 566
PpsI GAGTC 3 cut(s) 637, 898, 949
Ppu21I YACGTR 1 cut(s) 566
PscI ACATGT 1 cut(s) 211
PspCI CACGTG 1 cut(s) 566
PspPI GGNCC 1 cut(s) 464
PstI CTGCAG 2 cut(s) 834, 870
PsuI RGATCY 1 cut(s) 1031
RsaI GTAC 4 cut(s) 34, 210, 291, 792
RsaNI GTAC 4 cut(s) 33, 209, 290, 791
SaqAI TTAA 6 cut(s) 222, 267, 375, 572, 600, 660
SatI GCNGC 2 cut(s) 458, 833
Sau3AI GATC 5 cut(s) 577, 640, 664, 784, 1031
Sau96I GGNCC 1 cut(s) 464
SchI GAGTC 3 cut(s) 638, 899, 950
SfaNI GCATC 2 cut(s) 406, 901
SfcI CTRYAG 3 cut(s) 830, 866, 945
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
SpeI ACTAGT 1 cut(s) 653
Sse9I AATT 9 cut(s) 218, 232, 275, 360, 439, 669, 855, 930, 1000
SsiI CCGC 1 cut(s) 921
SspI AATATT 1 cut(s) 319
SspMI CTAG 5 cut(s) 654, 743, 897, 918, 1007
TaaI ACNGT 1 cut(s) 881
TaiI ACGT 1 cut(s) 568
TaqI TCGA 2 cut(s) 667, 853
TasI AATT 9 cut(s) 218, 232, 275, 360, 439, 669, 855, 930, 1000
TatI WGTACW 1 cut(s) 208
TfiI GAWTC 3 cut(s) 98, 228, 758
Tru1I TTAA 6 cut(s) 222, 267, 375, 572, 600, 660
Tru9I TTAA 6 cut(s) 222, 267, 375, 572, 600, 660
TscAI CASTG 1 cut(s) 808
TseFI GTSAC 5 cut(s) 157, 270, 470, 566, 977
TseI GCWGC 2 cut(s) 457, 832
Tsp45I GTSAC 5 cut(s) 157, 270, 470, 566, 977
TspDTI ATGAA 6 cut(s) 17, 51, 586, 942, 969, 1085
TspRI CASTG 1 cut(s) 808
Van91I CCANNNNNTGG 1 cut(s) 244
Vha464I CTTAAG 1 cut(s) 266
XapI RAATTY 5 cut(s) 360, 439, 669, 930, 1000
XceI RCATGY 2 cut(s) 215, 851
XmnI GAANNNNTTC 1 cut(s) 1041
XspI CTAG 5 cut(s) 654, 743, 897, 918, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.