Rmu_sc0006422.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006422.1
OG0000136
Physical Location & Seq
Reverse (-)
15376 .. 16892
1517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006422.1_g000004.1.cds

Sequence Viewer

Length: 900 bp
atggctcaactgttggaagtaacttcatcacgttctggaagcacaggtcgcagctcaaacgaatcagcacagctgcctcctccaggaccagcagtagtagaagagcaaggcaatacgccaacaagtaaagtcacacgaggacatagtaaaggcattccggaatggaatacaggtattaaagtacatgttcaatttaatggaatcaatttccagccggtgggggaaagggcaggtcagcttaagtcacaattgggtcaaatagtacgaaatggccatagggtaccgctaaatattcttgactggaagaaagttggtaatgacgtgaaggaagaaatttgggaagaggttaagaaaaacttggtggaagtccctgaaggttataaatcattatgcttggaaaattgtaatttgctttggaaggaccataagagcaaaacaaaatcatttcactatgcgtccaacaaggacgatcttgaacttggttctaaaaatcctccgtatattgttgcagagcaatggtctgagcttgttgcatattggagtagtgaggatgcaaagaaatcatatgaagagaaacttagaaaggagtcggaggaggatcagaacttgacaagtgttaaagaccgaattttccactctttgatgggagatgatggtcatgggtattgtcgtacttttggagctggtgtacctcgtagtctagtatatccaaaggagtcaaatatatctcaaagcacaaatgatctcgtacaaagaatcactgaacaagtgcgtcaagagtttcaagtgcagcttcagcaactgcatgctcgaattgattttctgcaaaataaggacactagtacagagtctcctagacaggttgagtacaaacttcatatgcaagcatatggtttataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23 Transposase_24

Protein Analysis

299

Amino Acids

33.89

Weight (kDa)

6.52

Isoelectric Point (pI)

45.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 381, 898
Acc36I ACCTGC 1 cut(s) 221
Acc65I GGTACC 1 cut(s) 280
AccB1I GGYRCC 1 cut(s) 280
AccB7I CCANNNNNTGG 1 cut(s) 217
AccIII TCCGGA 1 cut(s) 157
AciI CCGC 1 cut(s) 284
AclWI GGATC 1 cut(s) 606
AcoI YGGCCR 1 cut(s) 271
AcsI RAATTY 2 cut(s) 333, 627
AcuI CTGAAG 2 cut(s) 393, 779
AfaI GTAC 8 cut(s) 183, 264, 282, 673, 690, 750, 844, 869
AfiI CCNNNNNNNGG 2 cut(s) 83, 217
AflII CTTAAG 1 cut(s) 239
AflIII ACRYGT 1 cut(s) 184
AgsI TTSAA 3 cut(s) 191, 476, 785
AhlI ACTAGT 1 cut(s) 839
AjiI CACGTC 1 cut(s) 322
AjnI CCWGG 1 cut(s) 82
AluBI AGCT 6 cut(s) 54, 73, 238, 526, 683, 793
AluI AGCT 6 cut(s) 54, 73, 238, 526, 683, 793
Alw26I GTCTC 1 cut(s) 855
AlwI GGATC 1 cut(s) 606
AlwNI CAGNNNCTG 1 cut(s) 802
Aor13HI TCCGGA 1 cut(s) 157
AoxI GGCC 1 cut(s) 271
ApeKI GCWGC 3 cut(s) 51, 73, 790
ApoI RAATTY 2 cut(s) 333, 627
Asp718I GGTACC 1 cut(s) 280
AspS9I GGNCC 2 cut(s) 86, 421
AvaII GGWCC 2 cut(s) 86, 421
BalI TGGCCA 1 cut(s) 273
BanI GGYRCC 1 cut(s) 280
BauI CACGAG 1 cut(s) 135
BbvI GCAGC 3 cut(s) 60, 63, 802
BccI CCATC 2 cut(s) 637, 647
BciT130I CCWGG 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 855
BcuI ACTAGT 1 cut(s) 839
BfaI CTAG 3 cut(s) 701, 840, 855
BfrI CTTAAG 1 cut(s) 239
BfuAI ACCTGC 1 cut(s) 221
BisI GCNGC 3 cut(s) 52, 74, 791
BlsI GCNGC 3 cut(s) 53, 75, 792
Bme1390I CCNGG 1 cut(s) 84
Bme18I GGWCC 2 cut(s) 86, 421
BmgBI CACGTC 1 cut(s) 322
BmgT120I GGNCC 2 cut(s) 86, 421
BmiI GGNNCC 1 cut(s) 282
BmrFI CCNGG 1 cut(s) 84
BmsI GCATC 1 cut(s) 541
BpmI CTGGAG 1 cut(s) 66
BsaWI WCCGGW 1 cut(s) 157
BsaXI ACNNNNNCTCC 4 cut(s) 672, 702, 835, 865
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 217
Bse118I RCCGGY 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 305
Bse3DI GCAATG 1 cut(s) 521
BseAI TCCGGA 1 cut(s) 157
BseBI CCWGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 556
BseLI CCNNNNNNNGG 2 cut(s) 83, 217
BseMI GCAATG 1 cut(s) 521
BseMII CTCAG 1 cut(s) 513
BseNI ACTGG 1 cut(s) 305
BseRI GAGGAG 2 cut(s) 69, 608
BseXI GCAGC 3 cut(s) 60, 63, 802
BsgI GTGCAG 1 cut(s) 809
BshFI GGCC 1 cut(s) 273
BshNI GGYRCC 1 cut(s) 280
BsiSI CCGG 2 cut(s) 158, 215
BslFI GGGAC 1 cut(s) 353
BslI CCNNNNNNNGG 2 cut(s) 83, 217
BsmAI GTCTC 1 cut(s) 855
BsmFI GGGAC 1 cut(s) 353
BsmI GAATGC 1 cut(s) 153
BsnI GGCC 1 cut(s) 273
Bsp13I TCCGGA 1 cut(s) 157
Bsp143I GATC 3 cut(s) 469, 598, 742
BspACI CCGC 1 cut(s) 284
BspANI GGCC 1 cut(s) 273
BspCNI CTCAG 1 cut(s) 514
BspEI TCCGGA 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 282
BspMI ACCTGC 1 cut(s) 221
BspPI GGATC 1 cut(s) 606
BspQI GCTCTTC 1 cut(s) 96
BspT107I GGYRCC 1 cut(s) 280
BspTI CTTAAG 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 521
BsrFI RCCGGY 1 cut(s) 214
BsrI ACTGG 1 cut(s) 305
BssAI RCCGGY 1 cut(s) 214
BssMI GATC 3 cut(s) 469, 598, 742
BssSI CACGAG 1 cut(s) 135
Bst2BI CACGAG 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 12
Bst6I CTCTTC 3 cut(s) 96, 336, 564
BstAFI CTTAAG 1 cut(s) 239
BstC8I GCNNGC 2 cut(s) 807, 885
BstDEI CTNAG 2 cut(s) 522, 578
BstENI CCTNNNNNAGG 1 cut(s) 81
BstF5I GGATG 1 cut(s) 556
BstKTI GATC 3 cut(s) 472, 601, 745
BstMAI GTCTC 1 cut(s) 855
BstMBI GATC 3 cut(s) 469, 598, 742
BstMWI GCNNNNNNNGC 2 cut(s) 48, 796
BstNI CCWGG 1 cut(s) 84
BstNSI RCATGY 2 cut(s) 188, 809
BstSCI CCNGG 1 cut(s) 82
BstV1I GCAGC 3 cut(s) 60, 63, 802
BsuRI GGCC 1 cut(s) 273
BtrI CACGTC 1 cut(s) 322
BtsCI GGATG 1 cut(s) 556
BtsIMutI CAGTG 1 cut(s) 759
BveI ACCTGC 1 cut(s) 221
Cac8I GCNNGC 2 cut(s) 807, 885
CaiI CAGNNNCTG 1 cut(s) 802
Cfr10I RCCGGY 1 cut(s) 214
Cfr13I GGNCC 2 cut(s) 86, 421
CseI GACGC 2 cut(s) 444, 761
Csp6I GTAC 8 cut(s) 182, 263, 281, 672, 689, 749, 843, 868
CviAII CATG 3 cut(s) 185, 659, 806
CviJI RGCY 9 cut(s) 5, 54, 73, 214, 238, 273, 526, 683, 793
CviKI_1 RGCY 9 cut(s) 5, 54, 73, 214, 238, 273, 526, 683, 793
CviQI GTAC 8 cut(s) 182, 263, 281, 672, 689, 749, 843, 868
DdeI CTNAG 2 cut(s) 522, 578
DpnI GATC 3 cut(s) 471, 600, 744
DpnII GATC 3 cut(s) 469, 598, 742
EaeI YGGCCR 1 cut(s) 271
Eam1104I CTCTTC 3 cut(s) 96, 336, 564
EarI CTCTTC 3 cut(s) 96, 336, 564
Eco47I GGWCC 2 cut(s) 86, 421
Eco57I CTGAAG 2 cut(s) 393, 779
EcoNI CCTNNNNNAGG 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 82
FaeI CATG 3 cut(s) 188, 662, 809
FalI AAGNNNNNCTT 6 cut(s) 341, 373, 561, 593, 777, 809
FaqI GGGAC 1 cut(s) 353
FatI CATG 3 cut(s) 184, 658, 805
FauNDI CATATG 3 cut(s) 565, 879, 889
Fnu4HI GCNGC 3 cut(s) 52, 74, 791
FokI GGATG 1 cut(s) 563
Fsp4HI GCNGC 3 cut(s) 52, 74, 791
FspBI CTAG 3 cut(s) 701, 840, 855
GluI GCNGC 3 cut(s) 52, 74, 791
GsuI CTGGAG 1 cut(s) 66
HaeIII GGCC 1 cut(s) 273
HapII CCGG 2 cut(s) 158, 215
HgaI GACGC 2 cut(s) 444, 761
Hin1II CATG 3 cut(s) 188, 662, 809
HinfI GANTC 6 cut(s) 62, 201, 587, 716, 756, 848
HpaII CCGG 2 cut(s) 158, 215
Hpy166II GTNNAC 1 cut(s) 689
Hpy188I TCNGA 3 cut(s) 523, 592, 603
Hpy188III TCNNGA 5 cut(s) 36, 158, 296, 473, 776
Hpy8I GTNNAC 1 cut(s) 689
HpyAV CCTTC 3 cut(s) 319, 368, 412
HpyCH4III ACNGT 1 cut(s) 12
HpyCH4IV ACGT 2 cut(s) 31, 321
HpyCH4V TGCA 7 cut(s) 509, 533, 554, 790, 805, 826, 883
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 796
HpyF3I CTNAG 2 cut(s) 522, 578
HpySE526I ACGT 2 cut(s) 31, 321
Hsp92II CATG 3 cut(s) 188, 662, 809
Kpn2I TCCGGA 1 cut(s) 157
KpnI GGTACC 1 cut(s) 284
Kzo9I GATC 3 cut(s) 469, 598, 742
LguI GCTCTTC 1 cut(s) 96
LmnI GCTCC 1 cut(s) 680
Lsp1109I GCAGC 3 cut(s) 60, 63, 802
LweI GCATC 1 cut(s) 541
MaeI CTAG 3 cut(s) 701, 840, 855
MaeII ACGT 2 cut(s) 31, 321
MaeIII GTNAC 3 cut(s) 19, 130, 243
MalI GATC 3 cut(s) 471, 600, 744
MboI GATC 3 cut(s) 469, 598, 742
MboII GAAGA 5 cut(s) 113, 316, 341, 353, 581
MfeI CAATTG 1 cut(s) 248
MlsI TGGCCA 1 cut(s) 273
MluCI AATT 8 cut(s) 191, 205, 248, 333, 400, 406, 627, 813
MluNI TGGCCA 1 cut(s) 273
MlyI GAGTC 3 cut(s) 596, 725, 857
MmeI TCCRAC 2 cut(s) 483, 570
MnlI CCTC 9 cut(s) 87, 90, 131, 337, 504, 541, 586, 589, 702
Mox20I TGGCCA 1 cut(s) 273
MroI TCCGGA 1 cut(s) 157
MscI TGGCCA 1 cut(s) 273
MseI TTAA 5 cut(s) 177, 195, 240, 348, 618
Msp20I TGGCCA 1 cut(s) 273
MspA1I CMGCKG 1 cut(s) 73
MspCI CTTAAG 1 cut(s) 239
MspI CCGG 2 cut(s) 158, 215
MspR9I CCNGG 1 cut(s) 84
MunI CAATTG 1 cut(s) 248
Mva1269I GAATGC 1 cut(s) 153
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 48, 796
NdeI CATATG 3 cut(s) 565, 879, 889
NdeII GATC 3 cut(s) 469, 598, 742
NlaIII CATG 3 cut(s) 188, 662, 809
NlaIV GGNNCC 1 cut(s) 282
NmuCI GTSAC 2 cut(s) 130, 243
NspI RCATGY 2 cut(s) 188, 809
PaeI GCATGC 1 cut(s) 809
PciI ACATGT 1 cut(s) 184
PciSI GCTCTTC 1 cut(s) 96
PctI GAATGC 1 cut(s) 153
PfeI GAWTC 3 cut(s) 62, 201, 756
PflMI CCANNNNNTGG 1 cut(s) 217
PfoI TCCNGGA 1 cut(s) 82
PkrI GCNGC 3 cut(s) 53, 75, 792
PleI GAGTC 3 cut(s) 595, 724, 856
PpsI GAGTC 3 cut(s) 595, 724, 856
PscI ACATGT 1 cut(s) 184
PsiI TTATAA 2 cut(s) 381, 898
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 282
PspPI GGNCC 2 cut(s) 86, 421
PstNI CAGNNNCTG 1 cut(s) 802
PvuII CAGCTG 1 cut(s) 73
RsaI GTAC 8 cut(s) 183, 264, 282, 673, 690, 750, 844, 869
RsaNI GTAC 8 cut(s) 182, 263, 281, 672, 689, 749, 843, 868
SapI GCTCTTC 1 cut(s) 96
SaqAI TTAA 5 cut(s) 177, 195, 240, 348, 618
SatI GCNGC 3 cut(s) 52, 74, 791
Sau3AI GATC 3 cut(s) 469, 598, 742
Sau96I GGNCC 2 cut(s) 86, 421
SchI GAGTC 3 cut(s) 596, 725, 857
ScrFI CCNGG 1 cut(s) 84
SfaNI GCATC 1 cut(s) 541
SinI GGWCC 2 cut(s) 86, 421
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
SpeI ACTAGT 1 cut(s) 839
SphI GCATGC 1 cut(s) 809
Sse9I AATT 8 cut(s) 191, 205, 248, 333, 400, 406, 627, 813
SsiI CCGC 1 cut(s) 284
SspI AATATT 1 cut(s) 292
SspMI CTAG 3 cut(s) 701, 840, 855
StyD4I CCNGG 1 cut(s) 82
TaaI ACNGT 1 cut(s) 12
TaiI ACGT 2 cut(s) 34, 324
TaqI TCGA 1 cut(s) 811
TaqII GACCGA 1 cut(s) 639
TasI AATT 8 cut(s) 191, 205, 248, 333, 400, 406, 627, 813
TatI WGTACW 3 cut(s) 181, 842, 867
TfiI GAWTC 3 cut(s) 62, 201, 756
Tru1I TTAA 5 cut(s) 177, 195, 240, 348, 618
Tru9I TTAA 5 cut(s) 177, 195, 240, 348, 618
TscAI CASTG 1 cut(s) 766
TseFI GTSAC 2 cut(s) 130, 243
TseI GCWGC 3 cut(s) 51, 73, 790
Tsp45I GTSAC 2 cut(s) 130, 243
TspDTI ATGAA 3 cut(s) 15, 582, 866
TspGWI ACGGA 1 cut(s) 486
TspRI CASTG 1 cut(s) 766
Van91I CCANNNNNTGG 1 cut(s) 217
Vha464I CTTAAG 1 cut(s) 239
VpaK11BI GGWCC 2 cut(s) 86, 421
XagI CCTNNNNNAGG 1 cut(s) 81
XapI RAATTY 2 cut(s) 333, 627
XceI RCATGY 2 cut(s) 188, 809
XspI CTAG 3 cut(s) 701, 840, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.