RchiOBHm_Chr6g0306081

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000136
Physical Location & Seq
Forward (+)
64847728 .. 64855458
7731 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27510

Sequence Viewer

Length: 549 bp
ATGGCGCCTAAGAGAACAAAAGGTATGTCTATGGAGGAGTTGATTCCACCTTCTCCTGTGAGACCAAGAAAGGGTCAGTTGCAAGCACGATCAGCTAAACGTGTGTCTGCTTCTGGTCAATATAAACGGCCTCGACCCAATACATCTCGAAATCAACAAGAAGCTCAATTGGTGACACCTACAACTACTCAATCAGAGACACATCAGCATCATGTGTCTGAAGCTAGTCCAGAGGAGCCTGTTACAACCCAATTACACGAGTCAGGTCAAATTAATGAAAGAGCTAAGAAAGGTAGGGGTGCTGCTTGTGGTATGCCTGAATGGGGAACTGGAAAAATAGCGCATATTGAATTTGATGCTAATTGGATGCCTATCAGTGAAAATGGGAAGGGGTTTAGTTCACAACTTGGAATCTTGGCCCGAGATGGACAGAAGGTTCCTCTAACCTTTACTTCATGGACTGCCATGCCAGATGATCTTTTGGATGACATTTGGAAAGATGTCAAGGATAACACAGATGTTCCGGATGAATATAAACATCATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23 Transposase_24

Protein Analysis

182

Amino Acids

20.28

Weight (kDa)

7.84

Isoelectric Point (pI)

59.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccIII TCCGGA 1 cut(s) 523
AcsI RAATTY 1 cut(s) 350
AcuI CTGAAG 1 cut(s) 240
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 71, 323
AflIII ACRYGT 1 cut(s) 100
AgsI TTSAA 1 cut(s) 350
AloI GAACNNNNNNTCC 2 cut(s) 420, 452
AluBI AGCT 4 cut(s) 95, 164, 224, 284
AluI AGCT 4 cut(s) 95, 164, 224, 284
Alw26I GTCTC 2 cut(s) 55, 191
Ama87I CYCGRG 1 cut(s) 420
Aor13HI TCCGGA 1 cut(s) 523
AoxI GGCC 2 cut(s) 128, 417
ApeKI GCWGC 1 cut(s) 302
ApoI RAATTY 1 cut(s) 350
ArsI GACNNNNNNTTYG 2 cut(s) 11, 43
AseI ATTAAT 1 cut(s) 273
AspLEI GCGC 2 cut(s) 7, 343
AspS9I GGNCC 1 cut(s) 418
AsuHPI GGTGA 1 cut(s) 184
AvaI CYCGRG 1 cut(s) 420
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 257
BbvI GCAGC 1 cut(s) 289
BccI CCATC 1 cut(s) 419
BceAI ACGGC 1 cut(s) 143
BcoDI GTCTC 2 cut(s) 55, 191
BfaI CTAG 1 cut(s) 225
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 1 cut(s) 303
BlsI GCNGC 1 cut(s) 304
BmeT110I CYCGRG 1 cut(s) 420
BmgT120I GGNCC 1 cut(s) 418
BmiI GGNNCC 3 cut(s) 6, 237, 438
BmsI GCATC 3 cut(s) 217, 346, 357
BsaBI GATNNNNATC 1 cut(s) 371
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 55
BsaWI WCCGGW 1 cut(s) 523
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 323
Bse1I ACTGG 1 cut(s) 334
Bse3DI GCAATG 1 cut(s) 541
Bse8I GATNNNNATC 1 cut(s) 371
BseAI TCCGGA 1 cut(s) 523
BseGI GGATG 3 cut(s) 372, 490, 532
BseJI GATNNNNATC 1 cut(s) 371
BseLI CCNNNNNNNGG 2 cut(s) 71, 323
BseMI GCAATG 1 cut(s) 541
BseNI ACTGG 1 cut(s) 334
BseRI GAGGAG 2 cut(s) 50, 248
BseXI GCAGC 1 cut(s) 289
BshFI GGCC 2 cut(s) 130, 419
BshNI GGYRCC 1 cut(s) 4
BsiHKCI CYCGRG 1 cut(s) 420
BsiSI CCGG 1 cut(s) 524
BslI CCNNNNNNNGG 2 cut(s) 71, 323
BsmAI GTCTC 2 cut(s) 55, 191
BsnI GGCC 2 cut(s) 130, 419
Bso31I GGTCTC 1 cut(s) 55
BsoBI CYCGRG 1 cut(s) 420
Bsp13I TCCGGA 1 cut(s) 523
Bsp143I GATC 2 cut(s) 89, 475
BspANI GGCC 2 cut(s) 130, 419
BspEI TCCGGA 1 cut(s) 523
BspLI GGNNCC 3 cut(s) 6, 237, 438
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 55
BsrDI GCAATG 1 cut(s) 541
BsrI ACTGG 1 cut(s) 334
BssMI GATC 2 cut(s) 89, 475
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 257
Bst2BI CACGAG 1 cut(s) 257
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 9, 285
BstF5I GGATG 3 cut(s) 372, 490, 532
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 343
BstKTI GATC 2 cut(s) 92, 478
BstMAI GTCTC 2 cut(s) 55, 191
BstMBI GATC 2 cut(s) 89, 475
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstV1I GCAGC 1 cut(s) 289
BsuRI GGCC 2 cut(s) 130, 419
BtsCI GGATG 3 cut(s) 372, 490, 532
BtsIMutI CAGTG 1 cut(s) 382
Cac8I GCNNGC 1 cut(s) 84
CfoI GCGC 2 cut(s) 7, 343
Cfr13I GGNCC 1 cut(s) 418
CviAII CATG 3 cut(s) 212, 456, 466
CviJI RGCY 7 cut(s) 95, 130, 164, 224, 238, 284, 419
CviKI_1 RGCY 7 cut(s) 95, 130, 164, 224, 238, 284, 419
DdeI CTNAG 2 cut(s) 9, 285
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 91, 477
DpnII GATC 2 cut(s) 89, 475
Eco31I GGTCTC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 240
Eco88I CYCGRG 1 cut(s) 420
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 3 cut(s) 215, 459, 469
FaiI YATR 9 cut(s) 26, 32, 123, 213, 314, 345, 457, 467, 534
FatI CATG 3 cut(s) 211, 455, 465
Fnu4HI GCNGC 1 cut(s) 303
FokI GGATG 3 cut(s) 379, 497, 539
Fsp4HI GCNGC 1 cut(s) 303
FspBI CTAG 1 cut(s) 225
GlaI GCGC 2 cut(s) 6, 342
GluI GCNGC 1 cut(s) 303
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 130, 419
HapII CCGG 1 cut(s) 524
HhaI GCGC 2 cut(s) 7, 343
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 215, 459, 469
Hin6I GCGC 2 cut(s) 5, 341
HinP1I GCGC 2 cut(s) 5, 341
HinfI GANTC 3 cut(s) 43, 260, 411
HpaII CCGG 1 cut(s) 524
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 1 cut(s) 401
Hpy188I TCNGA 2 cut(s) 196, 220
Hpy188III TCNNGA 3 cut(s) 147, 230, 524
Hpy8I GTNNAC 1 cut(s) 401
HpyAV CCTTC 3 cut(s) 60, 382, 427
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 9, 285
HpySE526I ACGT 1 cut(s) 100
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 215, 459, 469
HspAI GCGC 2 cut(s) 5, 341
KasI GGCGCC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 523
Kzo9I GATC 2 cut(s) 89, 475
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 9 cut(s) 69, 99, 243, 249, 252, 315, 330, 483, 537
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 3 cut(s) 217, 346, 357
MaeI CTAG 1 cut(s) 225
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 2 cut(s) 172, 241
MalI GATC 2 cut(s) 91, 477
MboI GATC 2 cut(s) 89, 475
MfeI CAATTG 1 cut(s) 167
MluCI AATT 5 cut(s) 167, 251, 270, 350, 361
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 269
MnlI CCTC 4 cut(s) 28, 141, 226, 450
MroI TCCGGA 1 cut(s) 523
MseI TTAA 1 cut(s) 273
MspI CCGG 1 cut(s) 524
MunI CAATTG 1 cut(s) 167
MwoI GCNNNNNNNGC 1 cut(s) 92
NarI GGCGCC 1 cut(s) 5
NdeII GATC 2 cut(s) 89, 475
NlaIII CATG 3 cut(s) 215, 459, 469
NlaIV GGNNCC 3 cut(s) 6, 237, 438
NmuCI GTSAC 1 cut(s) 172
PfeI GAWTC 2 cut(s) 43, 411
PkrI GCNGC 1 cut(s) 304
PleI GAGTC 1 cut(s) 268
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 268
PshBI ATTAAT 1 cut(s) 273
PspN4I GGNNCC 3 cut(s) 6, 237, 438
PspPI GGNCC 1 cut(s) 418
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 1 cut(s) 303
Sau3AI GATC 2 cut(s) 89, 475
Sau96I GGNCC 1 cut(s) 418
SchI GAGTC 1 cut(s) 269
SfaNI GCATC 3 cut(s) 217, 346, 357
SfoI GGCGCC 1 cut(s) 6
Sse9I AATT 5 cut(s) 167, 251, 270, 350, 361
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 225
TaiI ACGT 1 cut(s) 103
TaqI TCGA 2 cut(s) 133, 148
TasI AATT 5 cut(s) 167, 251, 270, 350, 361
TfiI GAWTC 2 cut(s) 43, 411
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 1 cut(s) 302
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 3 cut(s) 291, 444, 543
TspRI CASTG 1 cut(s) 382
VspI ATTAAT 1 cut(s) 273
XapI RAATTY 1 cut(s) 350
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.