Rmu_sc0000322.1_g000037

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000322.1
OG0000136
Physical Location & Seq
Reverse (-)
142381 .. 144213
1833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000322.1_g000037.1.cds

Sequence Viewer

Length: 852 bp
atgtctgaatatttgagttccagcggctctcaatcttcaagcaacagcatttcctcatcacaacagccatcaccgtcttcaagattgccaccaccatctccttcccctccacctcctcctccacctcctccacctcctccaccaccgccaccccctgcactaccatctccaccagcagagatggaagtacaagctactgctgaaagttccagaggtcaaaataagggtatctcagaatggaatactggagttaaagtcgaaatcaagtttgattctaccttccaacccatgggagatagggctgcccaattaaagtcgcagttaggacaaattgtaagggatgggcaaagaattccccttacaataattgattggaagtctgttggagctgaagtgaaagatggaatatggaaagaagttaagatggagcaaaatggagaagaaactgataagatgaatgtgtggaaaaaagcacgagaccagtcaaaaccagaagtagttgaagtcattgaagaatatgaaaaacgacttttattagaacctgaggaccaaaggaaccttcaggttgtcaaagaccgtatatttcatgaattgattggagaggatggccatggatattgtcgcacctatggatctgccgtgcctagaagatttgtctacccacatgcaccaaattcctctgaaaccactgatgatataatacagaaagtaactgaatctgtggcaaaaaagtttcaggatcagcttaatatgctacaagctcgaattgattttttggagaacaaagagaagagaggcatagatcaaaatggacaggtttgtcatcacaagaataattgtttgaatatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

283

Amino Acids

31.56

Weight (kDa)

5.67

Isoelectric Point (pI)

72.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 819
AccB7I CCANNNNNTGG 1 cut(s) 289
AccI GTMKAC 1 cut(s) 657
AciI CCGC 2 cut(s) 24, 146
AclWI GGATC 2 cut(s) 640, 747
AcoI YGGCCR 1 cut(s) 607
AcsI RAATTY 2 cut(s) 351, 673
AcuI CTGAAG 2 cut(s) 411, 545
AfaI GTAC 1 cut(s) 189
AfiI CCNNNNNNNGG 1 cut(s) 289
AgsI TTSAA 5 cut(s) 39, 81, 503, 512, 844
AjuI GAANNNNNNNTTGG 2 cut(s) 543, 575
AluBI AGCT 4 cut(s) 194, 389, 745, 761
AluI AGCT 4 cut(s) 194, 389, 745, 761
Alw26I GTCTC 1 cut(s) 471
AlwI GGATC 2 cut(s) 640, 747
AoxI GGCC 1 cut(s) 607
ApeKI GCWGC 1 cut(s) 302
ApoI RAATTY 2 cut(s) 351, 673
AspS9I GGNCC 1 cut(s) 547
AsuHPI GGTGA 1 cut(s) 63
AvaII GGWCC 1 cut(s) 547
AxyI CCTNAGG 1 cut(s) 543
BalI TGGCCA 1 cut(s) 609
BauI CACGAG 1 cut(s) 474
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 289
BccI CCATC 8 cut(s) 76, 103, 172, 175, 335, 395, 418, 599
BceAI ACGGC 1 cut(s) 623
BcoDI GTCTC 1 cut(s) 471
BfaI CTAG 1 cut(s) 645
BisI GCNGC 2 cut(s) 25, 303
BlsI GCNGC 2 cut(s) 26, 304
Bme18I GGWCC 1 cut(s) 547
BmgT120I GGNCC 1 cut(s) 547
BmiI GGNNCC 1 cut(s) 557
BpiI GAAGAC 1 cut(s) 69
BpmI CTGGAG 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 471
BsaJI CCNNGG 2 cut(s) 288, 610
BsaXI ACNNNNNCTCC 4 cut(s) 240, 270, 378, 408
Bsc4I CCNNNNNNNGG 1 cut(s) 289
Bse1I ACTGG 2 cut(s) 250, 481
Bse21I CCTNAGG 1 cut(s) 543
BseDI CCNNGG 2 cut(s) 288, 610
BseGI GGATG 2 cut(s) 346, 610
BseLI CCNNNNNNNGG 1 cut(s) 289
BseMII CTCAG 2 cut(s) 246, 534
BseNI ACTGG 2 cut(s) 250, 481
BseRI GAGGAG 4 cut(s) 105, 108, 117, 126
BseXI GCAGC 1 cut(s) 289
BsgI GTGCAG 1 cut(s) 141
BshFI GGCC 1 cut(s) 609
BslI CCNNNNNNNGG 1 cut(s) 289
BsmAI GTCTC 1 cut(s) 471
BsnI GGCC 1 cut(s) 609
Bso31I GGTCTC 1 cut(s) 471
Bsp143I GATC 3 cut(s) 632, 739, 802
Bsp19I CCATGG 2 cut(s) 288, 610
BspACI CCGC 2 cut(s) 24, 146
BspANI GGCC 1 cut(s) 609
BspCNI CTCAG 2 cut(s) 245, 535
BspHI TCATGA 1 cut(s) 586
BspLI GGNNCC 1 cut(s) 557
BspPI GGATC 2 cut(s) 640, 747
BspTNI GGTCTC 1 cut(s) 471
BsrI ACTGG 2 cut(s) 250, 481
BssECI CCNNGG 2 cut(s) 288, 610
BssMI GATC 3 cut(s) 632, 739, 802
BssSI CACGAG 1 cut(s) 474
BssT1I CCWWGG 2 cut(s) 288, 610
Bst2BI CACGAG 1 cut(s) 474
Bst4CI ACNGT 2 cut(s) 75, 578
Bst6I CTCTTC 1 cut(s) 785
BstDEI CTNAG 2 cut(s) 232, 543
BstDSI CCRYGG 2 cut(s) 288, 610
BstF5I GGATG 2 cut(s) 346, 610
BstKTI GATC 3 cut(s) 635, 742, 805
BstMAI GTCTC 1 cut(s) 471
BstMBI GATC 3 cut(s) 632, 739, 802
BstMWI GCNNNNNNNGC 1 cut(s) 751
BstNSI RCATGY 1 cut(s) 668
BstV1I GCAGC 1 cut(s) 289
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 632
BstYI RGATCY 1 cut(s) 632
Bsu36I CCTNAGG 1 cut(s) 543
BsuRI GGCC 1 cut(s) 609
BtgI CCRYGG 2 cut(s) 288, 610
BtsCI GGATG 2 cut(s) 346, 610
BtsIMutI CAGTG 1 cut(s) 687
CciI TCATGA 1 cut(s) 586
Cfr13I GGNCC 1 cut(s) 547
Csp6I GTAC 1 cut(s) 188
CviAII CATG 4 cut(s) 289, 587, 611, 665
CviJI RGCY 8 cut(s) 27, 67, 194, 302, 389, 609, 745, 761
CviKI_1 RGCY 8 cut(s) 27, 67, 194, 302, 389, 609, 745, 761
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 2 cut(s) 232, 543
DpnI GATC 3 cut(s) 634, 741, 804
DpnII GATC 3 cut(s) 632, 739, 802
DrdI GACNNNNNNGTC 1 cut(s) 819
DseDI GACNNNNNNGTC 1 cut(s) 819
EaeI YGGCCR 1 cut(s) 607
Eam1104I CTCTTC 1 cut(s) 785
EarI CTCTTC 1 cut(s) 785
Eco130I CCWWGG 2 cut(s) 288, 610
Eco31I GGTCTC 1 cut(s) 471
Eco47I GGWCC 1 cut(s) 547
Eco57I CTGAAG 2 cut(s) 411, 545
Eco81I CCTNAGG 1 cut(s) 543
EcoRI GAATTC 1 cut(s) 351
EcoT14I CCWWGG 2 cut(s) 288, 610
ErhI CCWWGG 2 cut(s) 288, 610
FaeI CATG 4 cut(s) 292, 590, 614, 668
FatI CATG 4 cut(s) 288, 586, 610, 664
FblI GTMKAC 1 cut(s) 657
Fnu4HI GCNGC 2 cut(s) 25, 303
FokI GGATG 2 cut(s) 353, 617
Fsp4HI GCNGC 2 cut(s) 25, 303
FspBI CTAG 1 cut(s) 645
GluI GCNGC 2 cut(s) 25, 303
GsuI CTGGAG 1 cut(s) 267
HaeIII GGCC 1 cut(s) 609
Hin1II CATG 4 cut(s) 292, 590, 614, 668
HinfI GANTC 2 cut(s) 272, 716
HphI GGTGA 1 cut(s) 63
Hpy166II GTNNAC 1 cut(s) 658
Hpy188I TCNGA 3 cut(s) 7, 235, 682
Hpy188III TCNNGA 4 cut(s) 81, 210, 587, 737
Hpy8I GTNNAC 1 cut(s) 658
HpyAV CCTTC 3 cut(s) 111, 289, 569
HpyCH4III ACNGT 2 cut(s) 75, 578
HpyCH4V TGCA 2 cut(s) 158, 668
HpyF10VI GCNNNNNNNGC 1 cut(s) 751
HpyF3I CTNAG 2 cut(s) 232, 543
Hsp92II CATG 4 cut(s) 292, 590, 614, 668
Kzo9I GATC 3 cut(s) 632, 739, 802
LmnI GCTCC 2 cut(s) 386, 427
Lsp1109I GCAGC 1 cut(s) 289
MaeI CTAG 1 cut(s) 645
MaeIII GTNAC 1 cut(s) 709
MalI GATC 3 cut(s) 634, 741, 804
MboI GATC 3 cut(s) 632, 739, 802
MboII GAAGA 6 cut(s) 27, 69, 452, 524, 660, 802
MflI RGATCY 1 cut(s) 632
MlsI TGGCCA 1 cut(s) 609
MluCI AATT 8 cut(s) 308, 330, 351, 366, 590, 673, 765, 835
MluNI TGGCCA 1 cut(s) 609
MmeI TCCRAC 2 cut(s) 307, 364
Mox20I TGGCCA 1 cut(s) 609
MscI TGGCCA 1 cut(s) 609
MseI TTAA 4 cut(s) 252, 311, 420, 747
Msp20I TGGCCA 1 cut(s) 609
MspA1I CMGCKG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 751
NcoI CCATGG 2 cut(s) 288, 610
NdeII GATC 3 cut(s) 632, 739, 802
NlaIII CATG 4 cut(s) 292, 590, 614, 668
NlaIV GGNNCC 1 cut(s) 557
NspI RCATGY 1 cut(s) 668
PagI TCATGA 1 cut(s) 586
PfeI GAWTC 2 cut(s) 272, 716
PflMI CCANNNNNTGG 1 cut(s) 289
PkrI GCNGC 2 cut(s) 26, 304
PspN4I GGNNCC 1 cut(s) 557
PspPI GGNCC 1 cut(s) 547
PsuI RGATCY 1 cut(s) 632
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
SaqAI TTAA 4 cut(s) 252, 311, 420, 747
SatI GCNGC 2 cut(s) 25, 303
Sau3AI GATC 3 cut(s) 632, 739, 802
Sau96I GGNCC 1 cut(s) 547
SinI GGWCC 1 cut(s) 547
Sse9I AATT 8 cut(s) 308, 330, 351, 366, 590, 673, 765, 835
SsiI CCGC 2 cut(s) 24, 146
SspI AATATT 2 cut(s) 11, 847
SspMI CTAG 1 cut(s) 645
StyI CCWWGG 2 cut(s) 288, 610
TaaI ACNGT 2 cut(s) 75, 578
TaqI TCGA 2 cut(s) 258, 763
TasI AATT 8 cut(s) 308, 330, 351, 366, 590, 673, 765, 835
TatI WGTACW 1 cut(s) 187
TauI GCSGC 1 cut(s) 27
TfiI GAWTC 2 cut(s) 272, 716
Tru1I TTAA 4 cut(s) 252, 311, 420, 747
Tru9I TTAA 4 cut(s) 252, 311, 420, 747
TscAI CASTG 1 cut(s) 694
TseI GCWGC 1 cut(s) 302
TspDTI ATGAA 4 cut(s) 470, 534, 575, 603
TspRI CASTG 1 cut(s) 694
Van91I CCANNNNNTGG 1 cut(s) 289
VpaK11BI GGWCC 1 cut(s) 547
XapI RAATTY 2 cut(s) 351, 673
XceI RCATGY 1 cut(s) 668
XmiI GTMKAC 1 cut(s) 657
XspI CTAG 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.