FvH4_3g22852

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000136
Physical Location & Seq
Forward (+)
16009642 .. 16013004
3363 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22852.t1

Sequence Viewer

Length: 1269 bp
ATGGACAAGTCGTGGATAGACCTAGCAAATAGGCATTCAAGCATATATTATGATGGGATAGATAAATTCTTGACATTTGCATACAACAATAGGGATTTGGGTTCAAGGATTTACTGCCCTTGTAAAAAATGCGAAAATAGGTATATGTATGTAAGACTAGTTGTGCGGCAGCATCTTCAAGATTATGGTTTCTGGAAGAAATATAGGAAATGGCAGAAGCATGGTGAGGTTGCAGATTTTGTTGATATGGTGGATGGATATCAGAATGAGTCTTCTTATATGGAGGATGATATGGTTAGACTTGTCCAAGAAGCTTTAGGAGTTCCTATTATAGATGCACATGATGAGCATAATGGGGAAAACTCAACAGAACCATCTTTAGGGCCAAATGAGCCGACTAAGGCGTTCTTAAAGCTCCTAGAAGTTGCAAACCTTCCCTTGTATCCTGGTTCTAAGAAACATACAGCCTTATCATTTATAGTTTGGCTTCTACAAGCAAAGGTTCTTCATGGGTGGTCAGATAACTCTTTAAAAACCTTATTGGAGATATTAGAGGAAGCAATGCCGGAAGGTGTGCAACTGCCCAAGTCATATTATGAGGCTCAAAAGATAGTGGAAGATCTCGGTGAACATCTAGTTACCATTCGACGACAATATCCTTCTGCTGATGAACACTTTGTTAAGAGTGTTCATTTTCGTGAATTTGCAACATGGTTCAAGGAACATGTTCTGAGTTTGCAACGACGTGGTGTAATGTTATCTGAAGAAATTGTTGCTTTATCTAGTTTTCCTGCACCATCAGCAAAGAGGTTCAAGTCTTATAAAGCCAATGGCTTTCTGTTTCGTGTGAAGAGTATTGATAACCATCGCTCTACACAAAATAGTGGTGTAACCTTATTGCAAGCTGATTATAGTGAGGAGTCTTCACCATACTATGGGAAATTGACAGACATAATTAAAATCACATACTCCATTGATATCAAGTATGTTTTGTTTAAGTGTGACTGGGTTAATCCTTCTACAGGAATAAAGTTTGATCGTTTTAAGTTCCCTTTAGTCAACTTCAAGCGTTTGTTGTATAAGAATGACCGTATAGGGGATGAACCCTTCATCTTAGCATCTCAAGCTCATCAAGTTTGGTATGCTCCAGATCCTTCAGGACAAGACTGGTTGAATGTTGTGAGGATGCCTGCAAGAGACTTAACTCATCTGCAAACTAAGAATAGTAAAGACGCTAGTAGTTCAAGTGTGTTGGATGTGGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

423

Amino Acids

48.88

Weight (kDa)

6.55

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 3 - 76 1.2e-20 Transposase-associated domain
DUF4216 PF13952 319 - 391 2.3e-19 Domain of unknown function (DUF4216)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 822
AccB7I CCANNNNNTGG 1 cut(s) 935
AciI CCGC 1 cut(s) 166
AclWI GGATC 1 cut(s) 1145
AcsI RAATTY 2 cut(s) 65, 701
AcuI CTGAAG 2 cut(s) 783, 1140
AfiI CCNNNNNNNGG 4 cut(s) 380, 935, 1022, 1096
AflIII ACRYGT 1 cut(s) 724
AgsI TTSAA 8 cut(s) 39, 105, 179, 718, 814, 1066, 1174, 1245
AhlI ACTAGT 1 cut(s) 157
AjiI CACGTC 1 cut(s) 746
AjnI CCWGG 1 cut(s) 445
AluBI AGCT 4 cut(s) 314, 415, 905, 1127
AluI AGCT 4 cut(s) 314, 415, 905, 1127
Alw26I GTCTC 1 cut(s) 1191
AlwI GGATC 1 cut(s) 1145
AoxI GGCC 1 cut(s) 383
ApeKI GCWGC 1 cut(s) 169
ApoI RAATTY 2 cut(s) 65, 701
Asp700I GAANNNNTTC 1 cut(s) 726
AspS9I GGNCC 1 cut(s) 383
AsuHPI GGTGA 3 cut(s) 236, 638, 918
BbsI GAAGAC 2 cut(s) 264, 915
BbvI GCAGC 1 cut(s) 181
BccI CCATC 5 cut(s) 47, 248, 382, 805, 873
BciT130I CCWGG 1 cut(s) 447
BciVI GTATCC 1 cut(s) 453
BcoDI GTCTC 1 cut(s) 1191
BcuI ACTAGT 1 cut(s) 157
BfaI CTAG 6 cut(s) 23, 158, 419, 635, 783, 1236
BfmI CTRYAG 1 cut(s) 1020
BfuI GTATCC 1 cut(s) 453
BglII AGATCT 1 cut(s) 619
BisI GCNGC 2 cut(s) 167, 170
BlsI GCNGC 2 cut(s) 168, 171
Bme1390I CCNGG 1 cut(s) 447
BmgBI CACGTC 1 cut(s) 746
BmgT120I GGNCC 1 cut(s) 383
BmrFI CCNGG 1 cut(s) 447
BmrI ACTGGG 1 cut(s) 1015
BmsI GCATC 4 cut(s) 181, 325, 1127, 1176
BmuI ACTGGG 1 cut(s) 1015
BpiI GAAGAC 2 cut(s) 264, 915
BpmI CTGGAG 1 cut(s) 1131
BpuEI CTTGAG 1 cut(s) 1107
BsaBI GATNNNNATC 2 cut(s) 258, 864
Bsc4I CCNNNNNNNGG 4 cut(s) 380, 935, 1022, 1096
Bse1I ACTGG 2 cut(s) 1010, 1172
Bse3DI GCAATG 1 cut(s) 567
Bse8I GATNNNNATC 2 cut(s) 258, 864
BseBI CCWGG 1 cut(s) 447
BseGI GGATG 6 cut(s) 259, 292, 1105, 1191, 1261, 1267
BseJI GATNNNNATC 2 cut(s) 258, 864
BseLI CCNNNNNNNGG 4 cut(s) 380, 935, 1022, 1096
BseMI GCAATG 1 cut(s) 567
BseMII CTCAG 1 cut(s) 722
BseNI ACTGG 2 cut(s) 1010, 1172
BseRI GAGGAG 1 cut(s) 932
BseXI GCAGC 1 cut(s) 181
BsgI GTGCAG 1 cut(s) 777
BshFI GGCC 1 cut(s) 385
BsiSI CCGG 1 cut(s) 566
BslI CCNNNNNNNGG 4 cut(s) 380, 935, 1022, 1096
BsmAI GTCTC 1 cut(s) 1191
BsmI GAATGC 1 cut(s) 34
BsnI GGCC 1 cut(s) 385
Bsp143I GATC 3 cut(s) 619, 1036, 1150
BspACI CCGC 1 cut(s) 166
BspANI GGCC 1 cut(s) 385
BspCNI CTCAG 1 cut(s) 723
BspPI GGATC 1 cut(s) 1145
BsrDI GCAATG 1 cut(s) 567
BsrI ACTGG 2 cut(s) 1010, 1172
BssMI GATC 3 cut(s) 619, 1036, 1150
Bst2UI CCWGG 1 cut(s) 447
Bst4CI ACNGT 1 cut(s) 1091
Bst6I CTCTTC 1 cut(s) 845
BstC8I GCNNGC 2 cut(s) 903, 1191
BstDEI CTNAG 5 cut(s) 399, 453, 731, 1114, 1218
BstENI CCTNNNNNAGG 1 cut(s) 1020
BstF5I GGATG 6 cut(s) 259, 292, 1105, 1191, 1261, 1267
BstKTI GATC 3 cut(s) 622, 1039, 1153
BstMAI GTCTC 1 cut(s) 1191
BstMBI GATC 3 cut(s) 619, 1036, 1150
BstMWI GCNNNNNNNGC 3 cut(s) 391, 800, 1124
BstNI CCWGG 1 cut(s) 447
BstNSI RCATGY 1 cut(s) 728
BstSCI CCNGG 1 cut(s) 445
BstSFI CTRYAG 1 cut(s) 1020
BstV1I GCAGC 1 cut(s) 181
BstV2I GAAGAC 2 cut(s) 264, 915
BstX2I RGATCY 2 cut(s) 619, 1150
BstYI RGATCY 2 cut(s) 619, 1150
BsuI GTATCC 1 cut(s) 453
BsuRI GGCC 1 cut(s) 385
BtgZI GCGATG 1 cut(s) 851
BtrI CACGTC 1 cut(s) 746
BtsCI GGATG 6 cut(s) 259, 292, 1105, 1191, 1261, 1267
Cac8I GCNNGC 2 cut(s) 903, 1191
Cfr13I GGNCC 1 cut(s) 383
CseI GACGC 1 cut(s) 1241
CviAII CATG 5 cut(s) 221, 341, 509, 711, 725
DdeI CTNAG 5 cut(s) 399, 453, 731, 1114, 1218
DpnI GATC 3 cut(s) 621, 1038, 1152
DpnII GATC 3 cut(s) 619, 1036, 1150
DraI TTTAAA 1 cut(s) 531
Eam1104I CTCTTC 1 cut(s) 845
EarI CTCTTC 1 cut(s) 845
Eco32I GATATC 2 cut(s) 260, 979
Eco57I CTGAAG 2 cut(s) 783, 1140
EcoNI CCTNNNNNAGG 1 cut(s) 1020
EcoRII CCWGG 1 cut(s) 445
EcoRV GATATC 2 cut(s) 260, 979
FaeI CATG 5 cut(s) 224, 344, 512, 714, 728
FalI AAGNNNNNCTT 2 cut(s) 392, 424
FatI CATG 5 cut(s) 220, 340, 508, 710, 724
Fnu4HI GCNGC 2 cut(s) 167, 170
FokI GGATG 4 cut(s) 266, 299, 1112, 1198
Fsp4HI GCNGC 2 cut(s) 167, 170
FspBI CTAG 6 cut(s) 23, 158, 419, 635, 783, 1236
GluI GCNGC 2 cut(s) 167, 170
GsuI CTGGAG 1 cut(s) 1131
HaeIII GGCC 1 cut(s) 385
HapII CCGG 1 cut(s) 566
HgaI GACGC 1 cut(s) 1241
Hin1II CATG 5 cut(s) 224, 344, 512, 714, 728
HincII GTYRAC 1 cut(s) 1060
HindII GTYRAC 1 cut(s) 1060
HindIII AAGCTT 1 cut(s) 312
HinfI GANTC 2 cut(s) 269, 920
HpaII CCGG 1 cut(s) 566
HphI GGTGA 3 cut(s) 236, 638, 918
Hpy166II GTNNAC 2 cut(s) 629, 1060
Hpy188I TCNGA 4 cut(s) 264, 520, 732, 763
Hpy188III TCNNGA 6 cut(s) 70, 179, 193, 698, 1148, 1158
Hpy8I GTNNAC 2 cut(s) 629, 1060
Hpy99I CGWCG 2 cut(s) 651, 747
HpyAV CCTTC 6 cut(s) 443, 563, 669, 1026, 1117, 1164
HpyCH4III ACNGT 1 cut(s) 1091
HpyCH4IV ACGT 1 cut(s) 745
HpyF10VI GCNNNNNNNGC 3 cut(s) 391, 800, 1124
HpyF3I CTNAG 5 cut(s) 399, 453, 731, 1114, 1218
HpySE526I ACGT 1 cut(s) 745
Hsp92II CATG 5 cut(s) 224, 344, 512, 714, 728
Kzo9I GATC 3 cut(s) 619, 1036, 1150
LmnI GCTCC 2 cut(s) 420, 1150
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 4 cut(s) 181, 325, 1127, 1176
MaeI CTAG 6 cut(s) 23, 158, 419, 635, 783, 1236
MaeII ACGT 1 cut(s) 745
MaeIII GTNAC 3 cut(s) 637, 889, 1001
MalI GATC 3 cut(s) 621, 1038, 1152
MboI GATC 3 cut(s) 619, 1036, 1150
MboII GAAGA 8 cut(s) 167, 208, 264, 497, 629, 776, 862, 915
MflI RGATCY 2 cut(s) 619, 1150
MluCI AATT 5 cut(s) 65, 701, 768, 941, 954
MlyI GAGTC 2 cut(s) 278, 929
MmeI TCCRAC 1 cut(s) 1233
MnlI CCTC 7 cut(s) 220, 277, 547, 592, 801, 910, 1176
MroXI GAANNNNTTC 1 cut(s) 726
MseI TTAA 8 cut(s) 410, 530, 681, 957, 996, 1011, 1044, 1202
MslI CAYNNNNRTG 1 cut(s) 696
MspI CCGG 1 cut(s) 566
MspR9I CCNGG 1 cut(s) 447
Mva1269I GAATGC 1 cut(s) 34
MvaI CCWGG 1 cut(s) 447
MwoI GCNNNNNNNGC 3 cut(s) 391, 800, 1124
NdeII GATC 3 cut(s) 619, 1036, 1150
NlaIII CATG 5 cut(s) 224, 344, 512, 714, 728
NmuCI GTSAC 1 cut(s) 1001
NspI RCATGY 1 cut(s) 728
PciI ACATGT 1 cut(s) 724
PctI GAATGC 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 726
PflMI CCANNNNNTGG 1 cut(s) 935
PkrI GCNGC 2 cut(s) 168, 171
PleI GAGTC 2 cut(s) 277, 928
PpsI GAGTC 2 cut(s) 277, 928
PscI ACATGT 1 cut(s) 724
PsiI TTATAA 1 cut(s) 822
Psp6I CCWGG 1 cut(s) 445
PspGI CCWGG 1 cut(s) 445
PspPI GGNCC 1 cut(s) 383
PsuI RGATCY 2 cut(s) 619, 1150
RseI CAYNNNNRTG 1 cut(s) 696
SaqAI TTAA 8 cut(s) 410, 530, 681, 957, 996, 1011, 1044, 1202
SatI GCNGC 2 cut(s) 167, 170
Sau3AI GATC 3 cut(s) 619, 1036, 1150
Sau96I GGNCC 1 cut(s) 383
SchI GAGTC 2 cut(s) 278, 929
ScrFI CCNGG 1 cut(s) 447
SfaNI GCATC 4 cut(s) 181, 325, 1127, 1176
SfcI CTRYAG 1 cut(s) 1020
SmiMI CAYNNNNRTG 1 cut(s) 696
SmlI CTYRAG 1 cut(s) 1122
SmoI CTYRAG 1 cut(s) 1122
SpeI ACTAGT 1 cut(s) 157
Sse9I AATT 5 cut(s) 65, 701, 768, 941, 954
SsiI CCGC 1 cut(s) 166
SspMI CTAG 6 cut(s) 23, 158, 419, 635, 783, 1236
StyD4I CCNGG 1 cut(s) 445
TaaI ACNGT 1 cut(s) 1091
TaiI ACGT 1 cut(s) 748
TaqI TCGA 1 cut(s) 646
TasI AATT 5 cut(s) 65, 701, 768, 941, 954
TauI GCSGC 1 cut(s) 169
Tru1I TTAA 8 cut(s) 410, 530, 681, 957, 996, 1011, 1044, 1202
Tru9I TTAA 8 cut(s) 410, 530, 681, 957, 996, 1011, 1044, 1202
TseFI GTSAC 1 cut(s) 1001
TseI GCWGC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 1001
TspDTI ATGAA 5 cut(s) 497, 680, 684, 1099, 1116
Van91I CCANNNNNTGG 1 cut(s) 935
XagI CCTNNNNNAGG 1 cut(s) 1020
XapI RAATTY 2 cut(s) 65, 701
XceI RCATGY 1 cut(s) 728
XmnI GAANNNNTTC 1 cut(s) 726
XspI CTAG 6 cut(s) 23, 158, 419, 635, 783, 1236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.