Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000136

Physical Location & Seq

Genomic Coordinates Forward (+)

23355286 .. 23358968

Gene Structure 3683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g32340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGCATGGATGTGGACATGATGGTCATGTTGCCATGCTTCTTGGAGCTGCTAGTTTACTTCAAGAGTATCGCCACAAATTACAGGGGACTGTTGTTCTTGTTTTCCAACCAGCTAAGGAAGGAGGTGCAGAAGCAAAGAAAATGATAGAAGACGGGGCACTGGAGCATGTCAGTGCCATCCTTGGGTTGCATCTTGCTTCTGACCATCCCATTGGTTCAGTAGCCTCCAAACCTGGCCCTAGAATGGCTGCGAGTGGATTTTTTGAAGCCTTGATAAGTGGGAAGGGGGGTCGTGCTGCAATTCCACAGCACACAATAGATCCTATCTTGGCTGCTTCCAATGTTATTGTTAGTCTGCAGCATCTTGTTTCACGTGAAGCTGACCCCTTAGATTCACAGGTACCAACTGATGCAACAAGTGGCCATGAGGCTAGGAGGGAGTCCATAGGAGAGGGAGATCCTGAGGCCACTACCCATTTTGATTCAACTTCTGATGATGTCACTGGTCACCATGATCCTCCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0008150 GO:0008152 GO:0009850 GO:0009987 GO:0010178 GO:0010179 GO:0010817 GO:0012505 GO:0016787 GO:0016810 GO:0042445 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

176

Amino Acids

18.21

Weight (kDa)

5.51

Isoelectric Point (pI)

38.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M20	PF01546	1 - 133	8.1e-17	Peptidase family M20/M25/M40

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000136)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica	MD16G1158000.v1.1
prunus_persica	Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata	RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora	Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa	Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha	Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana	Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	21
Acc65I	GGTACC	1 cut(s)	400
AccB1I	GGYRCC	1 cut(s)	400
AclWI	GGATC	3 cut(s)	314, 452, 509
AcoI	YGGCCR	1 cut(s)	421
AcvI	CACGTG	1 cut(s)	374
AfaI	GTAC	1 cut(s)	402
AfiI	CCNNNNNNNGG	2 cut(s)	183, 244
AgsI	TTSAA	3 cut(s)	62, 266, 486
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	3 cut(s)	47, 113, 380
AluI	AGCT	3 cut(s)	47, 113, 380
AlwI	GGATC	3 cut(s)	314, 452, 509
AoxI	GGCC	3 cut(s)	235, 421, 465
ApeKI	GCWGC	5 cut(s)	47, 248, 296, 332, 358
Asp718I	GGTACC	1 cut(s)	400
AspS9I	GGNCC	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	500
AxyI	CCTNAGG	1 cut(s)	462
BaeGI	GKGCMC	1 cut(s)	160
BalI	TGGCCA	1 cut(s)	423
BanI	GGYRCC	1 cut(s)	400
BbrPI	CACGTG	1 cut(s)	374
BbsI	GAAGAC	1 cut(s)	156
BbvI	GCAGC	5 cut(s)	34, 235, 283, 319, 370
BccI	CCATC	3 cut(s)	14, 185, 213
BciT130I	CCWGG	1 cut(s)	234
BfaI	CTAG	3 cut(s)	51, 240, 432
BfmI	CTRYAG	1 cut(s)	356
BisI	GCNGC	5 cut(s)	48, 249, 297, 333, 359
BlsI	GCNGC	5 cut(s)	49, 250, 298, 334, 360
Bme1390I	CCNGG	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	1 cut(s)	402
BmrFI	CCNGG	1 cut(s)	234
BmsI	GCATC	3 cut(s)	199, 370, 400
BpiI	GAAGAC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	182
Bpu10I	CCTNAGC	1 cut(s)	114
BsaAI	YACGTR	1 cut(s)	374
BsaJI	CCNNGG	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	2 cut(s)	183, 244
Bse1I	ACTGG	2 cut(s)	165, 508
Bse21I	CCTNAGG	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	3 cut(s)	14, 177, 205
BseLI	CCNNNNNNNGG	2 cut(s)	183, 244
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	2 cut(s)	165, 508
BseSI	GKGCMC	1 cut(s)	160
BseXI	GCAGC	5 cut(s)	34, 235, 283, 319, 370
BsgI	GTGCAG	1 cut(s)	147
BshFI	GGCC	3 cut(s)	237, 423, 467
BshNI	GGYRCC	1 cut(s)	400
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	2 cut(s)	183, 244
BsmFI	GGGAC	1 cut(s)	100
BsnI	GGCC	3 cut(s)	237, 423, 467
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	3 cut(s)	319, 457, 514
BspANI	GGCC	3 cut(s)	237, 423, 467
BspCNI	CTCAG	1 cut(s)	454
BspLI	GGNNCC	1 cut(s)	402
BspMAI	CTGCAG	1 cut(s)	360
BspPI	GGATC	3 cut(s)	314, 452, 509
BspT107I	GGYRCC	1 cut(s)	400
BsrI	ACTGG	2 cut(s)	165, 508
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	3 cut(s)	319, 457, 514
BssT1I	CCWWGG	1 cut(s)	181
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	91
BstBAI	YACGTR	1 cut(s)	374
BstDEI	CTNAG	3 cut(s)	114, 388, 462
BstEII	GGTNACC	1 cut(s)	506
BstF5I	GGATG	3 cut(s)	14, 177, 205
BstKTI	GATC	3 cut(s)	322, 460, 517
BstMBI	GATC	3 cut(s)	319, 457, 514
BstNI	CCWGG	1 cut(s)	234
BstNSI	RCATGY	1 cut(s)	170
BstPI	GGTNACC	1 cut(s)	506
BstSCI	CCNGG	1 cut(s)	232
BstSFI	CTRYAG	1 cut(s)	356
BstSLI	GKGCMC	1 cut(s)	160
BstV1I	GCAGC	5 cut(s)	34, 235, 283, 319, 370
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	2 cut(s)	319, 457
BstXI	CCANNNNNNTGG	1 cut(s)	212
BstYI	RGATCY	2 cut(s)	319, 457
Bsu36I	CCTNAGG	1 cut(s)	462
BsuRI	GGCC	3 cut(s)	237, 423, 467
BtsCI	GGATG	3 cut(s)	14, 177, 205
BtsIMutI	CAGTG	3 cut(s)	158, 178, 501
Cfr13I	GGNCC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	401
CviAII	CATG	8 cut(s)	5, 17, 26, 34, 167, 425, 512, 525
CviQI	GTAC	1 cut(s)	401
DdeI	CTNAG	3 cut(s)	114, 388, 462
DpnI	GATC	3 cut(s)	321, 459, 516
DpnII	GATC	3 cut(s)	319, 457, 514
DrdI	GACNNNNNNGTC	1 cut(s)	21
DseDI	GACNNNNNNGTC	1 cut(s)	21
EaeI	YGGCCR	1 cut(s)	421
Eco130I	CCWWGG	1 cut(s)	181
Eco72I	CACGTG	1 cut(s)	374
Eco81I	CCTNAGG	1 cut(s)	462
Eco91I	GGTNACC	1 cut(s)	506
EcoO65I	GGTNACC	1 cut(s)	506
EcoRII	CCWGG	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	181
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	181
FaeI	CATG	8 cut(s)	8, 20, 29, 37, 170, 428, 515, 528
FaiI	YATR	9 cut(s)	6, 18, 27, 35, 168, 426, 446, 513, 526
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	8 cut(s)	4, 16, 25, 33, 166, 424, 511, 524
Fnu4HI	GCNGC	5 cut(s)	48, 249, 297, 333, 359
FokI	GGATG	3 cut(s)	21, 164, 192
Fsp4HI	GCNGC	5 cut(s)	48, 249, 297, 333, 359
FspBI	CTAG	3 cut(s)	51, 240, 432
GluI	GCNGC	5 cut(s)	48, 249, 297, 333, 359
GsuI	CTGGAG	1 cut(s)	182
HaeIII	GGCC	3 cut(s)	237, 423, 467
Hin1II	CATG	8 cut(s)	8, 20, 29, 37, 170, 428, 515, 528
HinfI	GANTC	3 cut(s)	392, 440, 482
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	2 cut(s)	14, 56
Hpy188I	TCNGA	2 cut(s)	202, 493
Hpy188III	TCNNGA	2 cut(s)	62, 461
Hpy8I	GTNNAC	2 cut(s)	14, 56
HpyAV	CCTTC	2 cut(s)	113, 277
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	7 cut(s)	4, 128, 190, 299, 358, 413, 524
HpyF3I	CTNAG	3 cut(s)	114, 388, 462
HpySE526I	ACGT	1 cut(s)	373
Hsp92II	CATG	8 cut(s)	8, 20, 29, 37, 170, 428, 515, 528
KpnI	GGTACC	1 cut(s)	404
Kzo9I	GATC	3 cut(s)	319, 457, 514
LmnI	GCTCC	2 cut(s)	44, 163
LpnPI	CCDG	8 cut(s)	68, 123, 146, 219, 246, 383, 474, 489
Lsp1109I	GCAGC	5 cut(s)	34, 235, 283, 319, 370
LweI	GCATC	3 cut(s)	199, 370, 400
MaeI	CTAG	3 cut(s)	51, 240, 432
MaeII	ACGT	1 cut(s)	373
MaeIII	GTNAC	2 cut(s)	499, 506
MalI	GATC	3 cut(s)	321, 459, 516
MboI	GATC	3 cut(s)	319, 457, 514
MboII	GAAGA	1 cut(s)	161
MflI	RGATCY	2 cut(s)	319, 457
MhlI	GDGCHC	1 cut(s)	160
MlsI	TGGCCA	1 cut(s)	423
MluCI	AATT	2 cut(s)	77, 300
MluNI	TGGCCA	1 cut(s)	423
MlyI	GAGTC	1 cut(s)	449
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	7 cut(s)	116, 235, 421, 429, 445, 457, 528
Mox20I	TGGCCA	1 cut(s)	423
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	423
MslI	CAYNNNNRTG	2 cut(s)	9, 171
Msp20I	TGGCCA	1 cut(s)	423
MspR9I	CCNGG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	234
NdeII	GATC	3 cut(s)	319, 457, 514
NlaIII	CATG	8 cut(s)	8, 20, 29, 37, 170, 428, 515, 528
NlaIV	GGNNCC	1 cut(s)	402
NmuCI	GTSAC	2 cut(s)	499, 506
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	170
PfeI	GAWTC	2 cut(s)	392, 482
PkrI	GCNGC	5 cut(s)	49, 250, 298, 334, 360
PleI	GAGTC	1 cut(s)	448
PmaCI	CACGTG	1 cut(s)	374
PmlI	CACGTG	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	448
Ppu21I	YACGTR	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	232
PspCI	CACGTG	1 cut(s)	374
PspEI	GGTNACC	1 cut(s)	506
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	402
PspPI	GGNCC	1 cut(s)	236
PstI	CTGCAG	1 cut(s)	360
PsuI	RGATCY	2 cut(s)	319, 457
RsaI	GTAC	1 cut(s)	402
RsaNI	GTAC	1 cut(s)	401
RseI	CAYNNNNRTG	2 cut(s)	9, 171
SatI	GCNGC	5 cut(s)	48, 249, 297, 333, 359
Sau3AI	GATC	3 cut(s)	319, 457, 514
Sau96I	GGNCC	1 cut(s)	236
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	7 cut(s)	49, 115, 127, 235, 376, 382, 402
SfaNI	GCATC	3 cut(s)	199, 370, 400
SfcI	CTRYAG	1 cut(s)	356
SmiMI	CAYNNNNRTG	2 cut(s)	9, 171
Sse9I	AATT	2 cut(s)	77, 300
SspMI	CTAG	3 cut(s)	51, 240, 432
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	1 cut(s)	181
TaaI	ACNGT	1 cut(s)	91
TaiI	ACGT	1 cut(s)	376
TasI	AATT	2 cut(s)	77, 300
TfiI	GAWTC	2 cut(s)	392, 482
TscAI	CASTG	3 cut(s)	165, 178, 508
TseFI	GTSAC	2 cut(s)	499, 506
TseI	GCWGC	5 cut(s)	47, 248, 296, 332, 358
Tsp45I	GTSAC	2 cut(s)	499, 506
TspRI	CASTG	3 cut(s)	165, 178, 508
XceI	RCATGY	1 cut(s)	170
XspI	CTAG	3 cut(s)	51, 240, 432
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.