RchiOBHm_Chr6g0306091

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000136
Physical Location & Seq
Forward (+)
64855460 .. 64856993
1534 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27511

Sequence Viewer

Length: 624 bp
ATGTGTGAGACGAATAAATCTAACCGTGCACGAGGAGGTGCCCCTCATAGGACTGGTCGAAAATCGTTTGCTAGACTACGAAAAGAGATCATGGAGAATGGAGAGAAAACAGATCGTGTGAGCATGTTTGTCAAAACAAGAGCTATGAAAACAAGGAATGATGATGGTCAGCCAATTGAAGTACATGATGAGGAGGCTACTGCCGTCATTAGTCAATTCAATGAATATTTGAGGGACATGCCAGAAGATGAACAAAATGATACTTTTCGTGAAGAGGTATTTACTACAGTGATGGGAGAAGATACACATGGGCGTGTTCGCATGTATGGAATAGGTGTAACTCCATCTCAAGTGTTTGGTAACTCAAAAACTTCTGAGACTACTGAAAAGAAGACAATTGAGGAAATGGAAAAGAAATACCAAACAAAGCTAGATGATCTCAAAGAAAGCCATGAATCTCAATTGGGAGACATGAAATTAAAGTACGAAGATGTGTCGAATCGTCTCAATCTTTTGATGGCACATGTTGGTATCCAAGTAAACCAAAGTGGAAGTACAAGTGAACAGCAATTAAGGCGTACTATAGATGGTCATCATCAATTAGATTTGGAAGGGCAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23 Transposase_24

Protein Analysis

207

Amino Acids

23.77

Weight (kDa)

5.71

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 2 - 115 3.1e-17 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 38
AfaI GTAC 4 cut(s) 183, 485, 556, 580
AfiI CCNNNNNNNGG 1 cut(s) 48
AflIII ACRYGT 1 cut(s) 523
AgsI TTSAA 2 cut(s) 179, 220
AluBI AGCT 2 cut(s) 143, 430
AluI AGCT 2 cut(s) 143, 430
Alw21I GWGCWC 1 cut(s) 31
Alw26I GTCTC 4 cut(s) 2, 371, 462, 509
Alw44I GTGCAC 1 cut(s) 27
ApaLI GTGCAC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 616
BaeGI GKGCMC 2 cut(s) 31, 43
BanI GGYRCC 1 cut(s) 38
BauI CACGAG 1 cut(s) 30
BbsI GAAGAC 1 cut(s) 398
Bbv12I GWGCWC 1 cut(s) 31
BccI CCATC 5 cut(s) 158, 286, 352, 511, 581
BceAI ACGGC 1 cut(s) 188
BciVI GTATCC 1 cut(s) 542
BcoDI GTCTC 4 cut(s) 2, 371, 462, 509
BfaI CTAG 2 cut(s) 72, 431
BfmI CTRYAG 2 cut(s) 285, 582
BfuI GTATCC 1 cut(s) 542
BisI GCNGC 1 cut(s) 617
BlsI GCNGC 1 cut(s) 618
BmiI GGNNCC 1 cut(s) 40
BpiI GAAGAC 1 cut(s) 398
BpuEI CTTGAG 1 cut(s) 333
BsaBI GATNNNNATC 1 cut(s) 591
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse1I ACTGG 1 cut(s) 58
Bse8I GATNNNNATC 1 cut(s) 591
BseJI GATNNNNATC 1 cut(s) 591
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 1 cut(s) 58
BseRI GAGGAG 2 cut(s) 48, 206
BseSI GKGCMC 2 cut(s) 31, 43
BshNI GGYRCC 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 31
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 4 cut(s) 2, 371, 462, 509
BsmBI CGTCTC 2 cut(s) 2, 509
BsmFI GGGAC 1 cut(s) 248
Bsp1286I GDGCHC 2 cut(s) 31, 43
Bsp143I GATC 3 cut(s) 87, 112, 436
BspCNI CTCAG 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 40
BspT107I GGYRCC 1 cut(s) 38
BsrI ACTGG 1 cut(s) 58
BssMI GATC 3 cut(s) 87, 112, 436
BssSI CACGAG 1 cut(s) 30
Bst2BI CACGAG 1 cut(s) 30
Bst4CI ACNGT 2 cut(s) 26, 289
Bst6I CTCTTC 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 375
BstKTI GATC 3 cut(s) 90, 115, 439
BstMAI GTCTC 4 cut(s) 2, 371, 462, 509
BstMBI GATC 3 cut(s) 87, 112, 436
BstMWI GCNNNNNNNGC 1 cut(s) 574
BstNSI RCATGY 4 cut(s) 127, 241, 325, 527
BstSFI CTRYAG 2 cut(s) 285, 582
BstSLI GKGCMC 2 cut(s) 31, 43
BstV2I GAAGAC 1 cut(s) 398
BsuI GTATCC 1 cut(s) 542
BtsIMutI CAGTG 1 cut(s) 294
Csp6I GTAC 4 cut(s) 182, 484, 555, 579
CviAII CATG 9 cut(s) 91, 124, 185, 238, 308, 322, 452, 472, 524
CviJI RGCY 5 cut(s) 143, 172, 197, 430, 450
CviKI_1 RGCY 5 cut(s) 143, 172, 197, 430, 450
CviQI GTAC 4 cut(s) 182, 484, 555, 579
DdeI CTNAG 1 cut(s) 375
DpnI GATC 3 cut(s) 89, 114, 438
DpnII GATC 3 cut(s) 87, 112, 436
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Esp3I CGTCTC 2 cut(s) 2, 509
FaeI CATG 9 cut(s) 94, 127, 188, 241, 311, 325, 455, 475, 527
FaqI GGGAC 1 cut(s) 248
FatI CATG 9 cut(s) 90, 123, 184, 237, 307, 321, 451, 471, 523
Fnu4HI GCNGC 1 cut(s) 617
Fsp4HI GCNGC 1 cut(s) 617
FspBI CTAG 2 cut(s) 72, 431
GluI GCNGC 1 cut(s) 617
Hin1II CATG 9 cut(s) 94, 127, 188, 241, 311, 325, 455, 475, 527
HinfI GANTC 2 cut(s) 455, 499
Hpy166II GTNNAC 3 cut(s) 29, 541, 563
Hpy188I TCNGA 1 cut(s) 376
Hpy188III TCNNGA 1 cut(s) 269
Hpy8I GTNNAC 3 cut(s) 29, 541, 563
HpyAV CCTTC 1 cut(s) 605
HpyCH4III ACNGT 2 cut(s) 26, 289
HpyCH4V TGCA 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 1 cut(s) 574
HpyF3I CTNAG 1 cut(s) 375
Hsp92II CATG 9 cut(s) 94, 127, 188, 241, 311, 325, 455, 475, 527
Kzo9I GATC 3 cut(s) 87, 112, 436
LpnPI CCDG 2 cut(s) 39, 255
MaeI CTAG 2 cut(s) 72, 431
MaeIII GTNAC 2 cut(s) 337, 359
MalI GATC 3 cut(s) 89, 114, 438
MboI GATC 3 cut(s) 87, 112, 436
MboII GAAGA 5 cut(s) 257, 284, 311, 403, 500
MfeI CAATTG 3 cut(s) 174, 396, 461
MhlI GDGCHC 2 cut(s) 31, 43
MluCI AATT 7 cut(s) 174, 215, 396, 461, 476, 569, 599
MnlI CCTC 8 cut(s) 26, 29, 54, 184, 187, 225, 268, 394
MseI TTAA 2 cut(s) 479, 572
MslI CAYNNNNRTG 1 cut(s) 312
MunI CAATTG 3 cut(s) 174, 396, 461
MwoI GCNNNNNNNGC 1 cut(s) 574
NdeII GATC 3 cut(s) 87, 112, 436
NlaIII CATG 9 cut(s) 94, 127, 188, 241, 311, 325, 455, 475, 527
NlaIV GGNNCC 1 cut(s) 40
NspI RCATGY 4 cut(s) 127, 241, 325, 527
PciI ACATGT 1 cut(s) 523
PfeI GAWTC 2 cut(s) 455, 499
PkrI GCNGC 1 cut(s) 618
PscI ACATGT 1 cut(s) 523
PspN4I GGNNCC 1 cut(s) 40
RsaI GTAC 4 cut(s) 183, 485, 556, 580
RsaNI GTAC 4 cut(s) 182, 484, 555, 579
RseI CAYNNNNRTG 1 cut(s) 312
SaqAI TTAA 2 cut(s) 479, 572
SatI GCNGC 1 cut(s) 617
Sau3AI GATC 3 cut(s) 87, 112, 436
SduI GDGCHC 2 cut(s) 31, 43
SetI ASST 5 cut(s) 40, 145, 279, 337, 432
SfcI CTRYAG 2 cut(s) 285, 582
SmiMI CAYNNNNRTG 1 cut(s) 312
SmlI CTYRAG 1 cut(s) 348
SmoI CTYRAG 1 cut(s) 348
Sse9I AATT 7 cut(s) 174, 215, 396, 461, 476, 569, 599
SspI AATATT 1 cut(s) 227
SspMI CTAG 2 cut(s) 72, 431
TaaI ACNGT 2 cut(s) 26, 289
TaqI TCGA 2 cut(s) 58, 497
TasI AATT 7 cut(s) 174, 215, 396, 461, 476, 569, 599
TatI WGTACW 2 cut(s) 181, 554
TfiI GAWTC 2 cut(s) 455, 499
Tru1I TTAA 2 cut(s) 479, 572
Tru9I TTAA 2 cut(s) 479, 572
TscAI CASTG 1 cut(s) 294
TseI GCWGC 1 cut(s) 616
TspDTI ATGAA 5 cut(s) 161, 237, 264, 468, 488
TspRI CASTG 1 cut(s) 294
VneI GTGCAC 1 cut(s) 27
XceI RCATGY 4 cut(s) 127, 241, 325, 527
XspI CTAG 2 cut(s) 72, 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.