Rorug05G0407600

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000136
Physical Location & Seq
Forward (+)
56193838 .. 56195833
1996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0407600.1

Sequence Viewer

Length: 1131 bp
ATGGGAAGGGCTCCTTGTTGTGACAAGGCAAATGTTAAGAAGGGACCATGGTCACCAGAAGAAGACTCAAAGCTCAAAGAATACATTGACAAATATGGTACTGGTGGAAATTGGATCGCTCTCCCTCAGAAAGCTGGTTTGAAGAGATGTGGAAAAAGCTGCAGATTGAGATGGCTTAACTATCTGAGGCCAAACATCAAACATGGAGAATTTTCTGAGGAGGAAGACAGAATAATTTGCACCCTCTTTACTAGTATTGGAAGCAGGTGGTCGATTATAGCAGCTCAGCTGCCAGGAAGGACTGACAATGATATCAAGAACTACTGGAACACCAAGCTGAAGAAGAAGCTCAGGGATATGCAGACTCATATGGCTCCTCCTTCATTAACAACTTCTCAGAGTCATAGATCAAAGCCTCCCCCATTTCCTGTTTCTTCCTCTCTTCACCAATTTCAAAACCAACCATTTCATCATCAACCTCTCTCACTCATGCACAAAGACCTTAACATGATGACTTACAGTACTTACACCCCAACCTTAACAAGTCCTGCTACTCCGGGATCTTTCTCATCAGGCTTTGAAATAATGCCAAACATTTCAACCCCTCTCACCAACTACTCCTCCCTTTTTCAAACTCAAGAGTGCCTTGTGGGTTCCATGCACTACAATCACCCAGCTGTGAAGAAAAATCTAAACCTCATCATGTTTGGAAGTGAAGGAAGCTGCAGTACATCATCTGATGGGAGCTGTAACAACAATCAGATCAGCTATGAGTCCAGGCCATCAGGAAATATCAAACAAGAGGAAATGGGTATGGGTTTTCAGCTTGAAGATCAGAACCAGAAGTTCATGATGCTTAACTATGGAAACAGTAGTAGTGCTGCAATATCAGGTGATCATCATAACTATATCAACAACAACAACCAATGGGGTGAGAGGCCAACTGGGTACAATGGTAATAATACCCGTTTCGGAGATTATGATCTTGAAGATGTTAAGCAGCTGATTAGTAGTAGTAGCACTGATATTAATATCAATATTAATAATGAAAATGGGTCTATATCTAACAGCTTGTTCAGTGTTGATGAAAACAAGACTGATCATAAAGAGAAGGTGATGTATTTCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23 Transposase_24

Protein Analysis

376

Amino Acids

42.44

Weight (kDa)

8.03

Isoelectric Point (pI)

58.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 62 8.7e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 77 1.9e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 69 - 111 6.6e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 118 1.2e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 255
Acc36I ACCTGC 1 cut(s) 255
AclWI GGATC 2 cut(s) 122, 568
AcsI RAATTY 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 359
AfaI GTAC 4 cut(s) 100, 523, 730, 950
AgsI TTSAA 7 cut(s) 142, 455, 581, 600, 632, 830, 989
AhlI ACTAGT 1 cut(s) 251
AjnI CCWGG 2 cut(s) 292, 776
AlwI GGATC 2 cut(s) 122, 568
AoxI GGCC 3 cut(s) 188, 779, 938
ApeKI GCWGC 6 cut(s) 159, 281, 289, 723, 881, 1000
ApoI RAATTY 1 cut(s) 209
AseI ATTAAT 2 cut(s) 1029, 1041
AspS9I GGNCC 1 cut(s) 44
AsuC2I CCSGG 1 cut(s) 558
AsuHPI GGTGA 7 cut(s) 45, 437, 601, 662, 905, 944, 1126
AvaII GGWCC 1 cut(s) 44
BaeI ACNNNNGTAYC 2 cut(s) 940, 973
BanII GRGCYC 1 cut(s) 13
BarI GAAGNNNNNNTAC 2 cut(s) 712, 744
BbsI GAAGAC 2 cut(s) 69, 231
BbvI GCAGC 6 cut(s) 146, 276, 293, 710, 868, 1012
BccI CCATC 3 cut(s) 165, 734, 790
BciT130I CCWGG 2 cut(s) 294, 778
BclI TGATCA 2 cut(s) 895, 1099
BcnI CCSGG 1 cut(s) 558
BcuI ACTAGT 1 cut(s) 251
BfaI CTAG 1 cut(s) 252
BfmI CTRYAG 2 cut(s) 160, 724
BfuAI ACCTGC 1 cut(s) 255
BisI GCNGC 6 cut(s) 160, 282, 290, 724, 882, 1001
BlpI GCTNAGC 1 cut(s) 285
BlsI GCNGC 6 cut(s) 161, 283, 291, 725, 883, 1002
BmcAI AGTACT 1 cut(s) 523
Bme1390I CCNGG 3 cut(s) 294, 558, 778
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 4 cut(s) 12, 45, 375, 655
BmrFI CCNGG 3 cut(s) 294, 558, 778
BmrI ACTGGG 1 cut(s) 954
BmsI GCATC 1 cut(s) 843
BmuI ACTGGG 1 cut(s) 954
BoxI GACNNNNGTC 1 cut(s) 49
BpiI GAAGAC 2 cut(s) 69, 231
Bpu10I CCTNAGC 1 cut(s) 350
Bpu1102I GCTNAGC 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 621
BpuMI CCSGG 1 cut(s) 558
BsaBI GATNNNNATC 1 cut(s) 981
BsaJI CCNNGG 1 cut(s) 47
BsaXI ACNNNNNCTCC 2 cut(s) 605, 635
Bse1I ACTGG 3 cut(s) 106, 329, 949
Bse8I GATNNNNATC 1 cut(s) 981
BseBI CCWGG 2 cut(s) 294, 778
BseDI CCNNGG 1 cut(s) 47
BseJI GATNNNNATC 1 cut(s) 981
BseMII CTCAG 6 cut(s) 140, 176, 207, 299, 364, 410
BseNI ACTGG 3 cut(s) 106, 329, 949
BseRI GAGGAG 3 cut(s) 233, 366, 610
BseXI GCAGC 6 cut(s) 146, 276, 293, 710, 868, 1012
BseYI CCCAGC 1 cut(s) 673
BshFI GGCC 3 cut(s) 190, 781, 940
BsiSI CCGG 1 cut(s) 557
BslFI GGGAC 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 57
BsnI GGCC 3 cut(s) 190, 781, 940
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 8 cut(s) 114, 407, 560, 762, 832, 895, 982, 1099
Bsp1720I GCTNAGC 1 cut(s) 285
Bsp19I CCATGG 1 cut(s) 47
BspANI GGCC 3 cut(s) 190, 781, 940
BspCNI CTCAG 6 cut(s) 139, 177, 208, 298, 363, 409
BspHI TCATGA 1 cut(s) 849
BspLI GGNNCC 4 cut(s) 12, 45, 375, 655
BspMAI CTGCAG 2 cut(s) 164, 728
BspMI ACCTGC 1 cut(s) 255
BspPI GGATC 2 cut(s) 122, 568
BsrI ACTGG 3 cut(s) 106, 329, 949
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 8 cut(s) 114, 407, 560, 762, 832, 895, 982, 1099
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 2 cut(s) 294, 778
Bst4CI ACNGT 2 cut(s) 521, 872
Bst6I CTCTTC 2 cut(s) 137, 447
BstDEI CTNAG 6 cut(s) 126, 185, 216, 285, 350, 396
BstDSI CCRYGG 1 cut(s) 47
BstEII GGTNACC 1 cut(s) 51
BstKTI GATC 8 cut(s) 117, 410, 563, 765, 835, 898, 985, 1102
BstMBI GATC 8 cut(s) 114, 407, 560, 762, 832, 895, 982, 1099
BstNI CCWGG 2 cut(s) 294, 778
BstPAI GACNNNNGTC 1 cut(s) 49
BstPI GGTNACC 1 cut(s) 51
BstSCI CCNGG 3 cut(s) 292, 556, 776
BstSFI CTRYAG 2 cut(s) 160, 724
BstV1I GCAGC 6 cut(s) 146, 276, 293, 710, 868, 1012
BstV2I GAAGAC 2 cut(s) 69, 231
BstX2I RGATCY 1 cut(s) 560
BstYI RGATCY 1 cut(s) 560
BsuRI GGCC 3 cut(s) 190, 781, 940
BtgI CCRYGG 1 cut(s) 47
BtsIMutI CAGTG 2 cut(s) 1020, 1084
BveI ACCTGC 1 cut(s) 255
CciI TCATGA 1 cut(s) 849
Cfr13I GGNCC 1 cut(s) 44
Csp6I GTAC 4 cut(s) 99, 522, 729, 949
CviAII CATG 7 cut(s) 48, 203, 490, 508, 658, 703, 850
CviQI GTAC 4 cut(s) 99, 522, 729, 949
DdeI CTNAG 6 cut(s) 126, 185, 216, 285, 350, 396
DpnI GATC 8 cut(s) 116, 409, 562, 764, 834, 897, 984, 1101
DpnII GATC 8 cut(s) 114, 407, 560, 762, 832, 895, 982, 1099
Eam1104I CTCTTC 2 cut(s) 137, 447
EarI CTCTTC 2 cut(s) 137, 447
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 13
Eco32I GATATC 1 cut(s) 313
Eco47I GGWCC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 359
Eco91I GGTNACC 1 cut(s) 51
EcoO65I GGTNACC 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 292, 776
EcoRV GATATC 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 7 cut(s) 51, 206, 493, 511, 661, 706, 853
FalI AAGNNNNNCTT 3 cut(s) 30, 630, 662
FaqI GGGAC 1 cut(s) 57
FatI CATG 7 cut(s) 47, 202, 489, 507, 657, 702, 849
FauNDI CATATG 1 cut(s) 369
FbaI TGATCA 2 cut(s) 895, 1099
Fnu4HI GCNGC 6 cut(s) 160, 282, 290, 724, 882, 1001
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 6 cut(s) 160, 282, 290, 724, 882, 1001
FspBI CTAG 1 cut(s) 252
GluI GCNGC 6 cut(s) 160, 282, 290, 724, 882, 1001
GsaI CCCAGC 1 cut(s) 677
HaeIII GGCC 3 cut(s) 190, 781, 940
HapII CCGG 1 cut(s) 557
Hin1II CATG 7 cut(s) 51, 206, 493, 511, 661, 706, 853
HinfI GANTC 4 cut(s) 65, 364, 400, 773
HpaII CCGG 1 cut(s) 557
HphI GGTGA 7 cut(s) 45, 437, 601, 662, 905, 944, 1126
Hpy188I TCNGA 8 cut(s) 129, 186, 217, 399, 739, 762, 837, 974
Hpy188III TCNNGA 5 cut(s) 316, 638, 786, 850, 986
HpyAV CCTTC 5 cut(s) 34, 291, 390, 710, 1105
HpyCH4III ACNGT 2 cut(s) 521, 872
HpyCH4V TGCA 7 cut(s) 162, 240, 361, 493, 661, 726, 884
HpyF3I CTNAG 6 cut(s) 126, 185, 216, 285, 350, 396
Hsp92II CATG 7 cut(s) 51, 206, 493, 511, 661, 706, 853
Ksp22I TGATCA 2 cut(s) 895, 1099
Kzo9I GATC 8 cut(s) 114, 407, 560, 762, 832, 895, 982, 1099
LmnI GCTCC 3 cut(s) 16, 379, 744
Lsp1109I GCAGC 6 cut(s) 146, 276, 293, 710, 868, 1012
LweI GCATC 1 cut(s) 843
MaeI CTAG 1 cut(s) 252
MaeIII GTNAC 3 cut(s) 20, 51, 749
MalI GATC 8 cut(s) 116, 409, 562, 764, 834, 897, 984, 1101
MboI GATC 8 cut(s) 114, 407, 560, 762, 832, 895, 982, 1099
MflI RGATCY 1 cut(s) 560
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 4 cut(s) 109, 209, 234, 449
MlyI GAGTC 4 cut(s) 59, 358, 409, 782
MseI TTAA 9 cut(s) 36, 177, 386, 504, 539, 858, 996, 1029, 1041
MspA1I CMGCKG 3 cut(s) 289, 677, 1003
MspI CCGG 1 cut(s) 557
MspR9I CCNGG 3 cut(s) 294, 558, 778
MvaI CCWGG 2 cut(s) 294, 778
NciI CCSGG 1 cut(s) 558
NcoI CCATGG 1 cut(s) 47
NdeI CATATG 1 cut(s) 369
NdeII GATC 8 cut(s) 114, 407, 560, 762, 832, 895, 982, 1099
NlaIII CATG 7 cut(s) 51, 206, 493, 511, 661, 706, 853
NlaIV GGNNCC 4 cut(s) 12, 45, 375, 655
NmuCI GTSAC 2 cut(s) 20, 51
PagI TCATGA 1 cut(s) 849
PaqCI CACCTGC 1 cut(s) 255
PfoI TCCNGGA 1 cut(s) 556
PkrI GCNGC 6 cut(s) 161, 283, 291, 725, 883, 1002
PleI GAGTC 4 cut(s) 59, 358, 408, 781
PpsI GAGTC 4 cut(s) 59, 358, 408, 781
PshAI GACNNNNGTC 1 cut(s) 49
PshBI ATTAAT 2 cut(s) 1029, 1041
Psp6I CCWGG 2 cut(s) 292, 776
PspEI GGTNACC 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 673
PspGI CCWGG 2 cut(s) 292, 776
PspN4I GGNNCC 4 cut(s) 12, 45, 375, 655
PspPI GGNCC 1 cut(s) 44
PstI CTGCAG 2 cut(s) 164, 728
PsuI RGATCY 1 cut(s) 560
PvuII CAGCTG 3 cut(s) 289, 677, 1003
RsaI GTAC 4 cut(s) 100, 523, 730, 950
RsaNI GTAC 4 cut(s) 99, 522, 729, 949
SaqAI TTAA 9 cut(s) 36, 177, 386, 504, 539, 858, 996, 1029, 1041
SatI GCNGC 6 cut(s) 160, 282, 290, 724, 882, 1001
Sau3AI GATC 8 cut(s) 114, 407, 560, 762, 832, 895, 982, 1099
Sau96I GGNCC 1 cut(s) 44
ScaI AGTACT 1 cut(s) 523
SchI GAGTC 4 cut(s) 59, 358, 409, 782
ScrFI CCNGG 3 cut(s) 294, 558, 778
SduI GDGCHC 1 cut(s) 13
SfaNI GCATC 1 cut(s) 843
SfcI CTRYAG 2 cut(s) 160, 724
SinI GGWCC 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 636
SmoI CTYRAG 1 cut(s) 636
SpeI ACTAGT 1 cut(s) 251
Sse9I AATT 4 cut(s) 109, 209, 234, 449
SspI AATATT 1 cut(s) 1039
SspMI CTAG 1 cut(s) 252
StyD4I CCNGG 3 cut(s) 292, 556, 776
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 2 cut(s) 521, 872
TaqI TCGA 1 cut(s) 272
TasI AATT 4 cut(s) 109, 209, 234, 449
TatI WGTACW 2 cut(s) 521, 728
Tru1I TTAA 9 cut(s) 36, 177, 386, 504, 539, 858, 996, 1029, 1041
Tru9I TTAA 9 cut(s) 36, 177, 386, 504, 539, 858, 996, 1029, 1041
TscAI CASTG 2 cut(s) 1027, 1084
TseFI GTSAC 2 cut(s) 20, 51
TseI GCWGC 6 cut(s) 159, 281, 289, 723, 881, 1000
Tsp45I GTSAC 2 cut(s) 20, 51
TspDTI ATGAA 5 cut(s) 372, 458, 838, 1062, 1101
TspRI CASTG 2 cut(s) 1027, 1084
VpaK11BI GGWCC 1 cut(s) 44
VspI ATTAAT 2 cut(s) 1029, 1041
XapI RAATTY 1 cut(s) 209
XspI CTAG 1 cut(s) 252
ZrmI AGTACT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.