Rorug01G0353100

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000136
Physical Location & Seq
Reverse (-)
47004866 .. 47009399
4534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0353100.1

Sequence Viewer

Length: 1377 bp
ATGCTACTGGTAGCTCGACAATTCAGCCATCGCTGGTGGCGCCGCCGCCGTCCACACATCGGCCTCTCCCACACTCCACTCACCAACCTCAACTTCCATTCCGAACCGGACGACTTCTTGCCGTGGCTGGAGCGCAAGTCCGGCACCGAAATCTCTTCCGCTCTTTCGATAGGGAAATGCACTCTCGGAACGGCTCTCTTTGCTTCCAAGAGCATAAGAGCCGGAGACTGCATATTGAAAGTTCCGTACAGCGTGCAACTAGCTCCGGATAATCTTGCTCCGGAATTGAGAGCTTTGTTAGGTGATCGAGTCGGTGATGTTGCGAAGGTCGCCATTGTCATTTTGCTTGAGCAGAAAATGGGCCAGGACTCTGAATGGGCTCCTTACATCAGCCGGCTTCCTCGCCCCGAGGAGATGCATAGCACAATATTTTGGAGCGAAGATGAGTTGGAGATGATTCGTCAAAGCTCTCTGTATCAGGAGACAATTAATCAAAGATCCCTTGTTGAAAAGGAATTTTTGGCAGCTAGGAGAGCTCTTGAGCACTTTCCTGAGATGTTCCAAAGTATCAGCTGTAAGGATTTCATGCATGCATATGCTTTAGTTACTTCTCGAGCATGGGGAAGCAGAAAGGGTTATTCCCTGATTCCATTTGCAGATTTTTTGAACCATGATGGGACTTCAGAATCAGTTGTGCTGAGTGATGATGACAAACATTTCTCAGAGGTGATTGCTGATCGTAATTATGCTCAAGGTGAACAGGTGCTGATAAGATATGGCAAATTTTCAAACGCTACCCTGCTGTTGGACTTTGGGTTTACACTTCCATACAACATTCACGACCAGGTCCAGATCCAGGTAAACATACCTCATCATGATATTCTTCGAGATTTGAAGTTGGAACTTTTGAAGAGACATCATAGACCAATCAACAATGACGTCAATGGTTTCAACTCTTCAGTGGATTGTTTCACAATCAAGGAAGTGAAATCTGGTAGTGGAAAGGGGAAAGGAATTCCACAGTCACTTCGTGCATTTGCTCGTGTCCTGTGTTGTACCTCTTGTGAAGAACTTAGTGACCTGGTCAATGAAGCAGTGGAACATGATGGTCGATTGGCTCGGCGTCCTTTAACAAATAGAAGCAGAGAGATTGAAGCACATCAGATGCTGACGGAAAAATTAACCCAATTAGCTGAGGATTGTGATGCATCTTTTAAGTCTCTGGGACCCGTAAGTTCTCCTGTTACGTGTGAAAGGCCCTCTCTCCGGAAGCAAATGGCTTGCGATCTCCTTAATGGAGAGCTTCGCATCCTTAAATCCGCGTGCGCATGGCTTAAAGACTACTGCACTACCTTGACTGCAACAGACTGCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

458

Amino Acids

51.9

Weight (kDa)

6.5

Isoelectric Point (pI)

53.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rubis-subs-bind PF09273 293 - 438 8.3e-06 Rubisco LSMT substrate-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 942
Acc16I TGCGCA 1 cut(s) 1327
AccB1I GGYRCC 2 cut(s) 39, 143
AccBSI CCGCTC 1 cut(s) 161
AccII CGCG 1 cut(s) 1322
AccIII TCCGGA 3 cut(s) 265, 280, 1266
AciI CCGC 4 cut(s) 43, 46, 159, 1320
AclWI GGATC 2 cut(s) 492, 847
AcsI RAATTY 3 cut(s) 515, 782, 1014
AcuI CTGAAG 2 cut(s) 666, 942
AcyI GRCGYC 3 cut(s) 40, 939, 1123
AdeI CACNNNGTG 1 cut(s) 1031
AfaI GTAC 2 cut(s) 248, 1057
AfiI CCNNNNNNNGG 4 cut(s) 59, 805, 856, 1266
AflIII ACRYGT 1 cut(s) 1247
AgsI TTSAA 8 cut(s) 238, 509, 667, 789, 895, 910, 952, 1154
AjnI CCWGG 4 cut(s) 363, 843, 855, 1080
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
AluBI AGCT 9 cut(s) 14, 263, 293, 468, 527, 536, 573, 1193, 1303
AluI AGCT 9 cut(s) 14, 263, 293, 468, 527, 536, 573, 1193, 1303
Alw21I GWGCWC 2 cut(s) 538, 546
Alw26I GTCTC 4 cut(s) 219, 476, 907, 1224
AlwI GGATC 2 cut(s) 492, 847
AlwNI CAGNNNCTG 2 cut(s) 766, 1168
Ama87I CYCGRG 2 cut(s) 407, 612
Aor13HI TCCGGA 3 cut(s) 265, 280, 1266
AoxI GGCC 3 cut(s) 61, 361, 1256
ApeKI GCWGC 1 cut(s) 524
ApoI RAATTY 3 cut(s) 515, 782, 1014
AseI ATTAAT 1 cut(s) 489
AspLEI GCGC 3 cut(s) 42, 135, 1328
AspS9I GGNCC 4 cut(s) 361, 847, 1226, 1257
AsuHPI GGTGA 5 cut(s) 73, 314, 326, 739, 767
AvaI CYCGRG 2 cut(s) 407, 612
AvaII GGWCC 2 cut(s) 847, 1226
BanI GGYRCC 2 cut(s) 39, 143
BanII GRGCYC 2 cut(s) 382, 538
BauI CACGAG 1 cut(s) 1041
Bbv12I GWGCWC 2 cut(s) 538, 546
BbvCI CCTCAGC 1 cut(s) 1194
BbvI GCAGC 1 cut(s) 536
BccI CCATC 3 cut(s) 36, 668, 1100
BceAI ACGGC 3 cut(s) 33, 106, 207
BciT130I CCWGG 4 cut(s) 365, 845, 857, 1082
BcoDI GTCTC 4 cut(s) 219, 476, 907, 1224
BfaI CTAG 2 cut(s) 260, 528
BfoI RGCGCY 1 cut(s) 43
BisI GCNGC 3 cut(s) 43, 46, 525
BlsI GCNGC 3 cut(s) 44, 47, 526
Bme1390I CCNGG 4 cut(s) 365, 845, 857, 1082
Bme18I GGWCC 2 cut(s) 847, 1226
BmeT110I CYCGRG 2 cut(s) 407, 612
BmgT120I GGNCC 4 cut(s) 361, 847, 1226, 1257
BmiI GGNNCC 5 cut(s) 41, 145, 381, 1227, 1228
BmrFI CCNGG 4 cut(s) 365, 845, 857, 1082
BmsI GCATC 5 cut(s) 405, 1155, 1195, 1217, 1317
BpmI CTGGAG 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 1194
BpuEI CTTGAG 3 cut(s) 368, 560, 735
BsaAI YACGTR 1 cut(s) 1248
BsaHI GRCGYC 3 cut(s) 40, 939, 1123
BsaJI CCNNGG 2 cut(s) 122, 408
BsaWI WCCGGW 4 cut(s) 106, 265, 280, 1266
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bsc4I CCNNNNNNNGG 4 cut(s) 59, 805, 856, 1266
Bse118I RCCGGY 1 cut(s) 393
Bse1I ACTGG 1 cut(s) 12
BseAI TCCGGA 3 cut(s) 265, 280, 1266
BseBI CCWGG 4 cut(s) 365, 845, 857, 1082
BseDI CCNNGG 2 cut(s) 122, 408
BseGI GGATG 1 cut(s) 1308
BseLI CCNNNNNNNGG 4 cut(s) 59, 805, 856, 1266
BseMII CTCAG 4 cut(s) 543, 689, 735, 1185
BseNI ACTGG 1 cut(s) 12
BseRI GAGGAG 1 cut(s) 425
BseXI GCAGC 1 cut(s) 536
BsgI GTGCAG 1 cut(s) 1330
Bsh1236I CGCG 1 cut(s) 1322
BshFI GGCC 3 cut(s) 63, 363, 1258
BshNI GGYRCC 2 cut(s) 39, 143
BsiHKAI GWGCWC 2 cut(s) 538, 546
BsiHKCI CYCGRG 2 cut(s) 407, 612
BsiSI CCGG 7 cut(s) 107, 141, 222, 266, 281, 394, 1267
BslFI GGGAC 2 cut(s) 691, 1239
BslI CCNNNNNNNGG 4 cut(s) 59, 805, 856, 1266
BsmAI GTCTC 4 cut(s) 219, 476, 907, 1224
BsmFI GGGAC 2 cut(s) 691, 1239
BsnI GGCC 3 cut(s) 63, 363, 1258
BsoBI CYCGRG 2 cut(s) 407, 612
Bsp1286I GDGCHC 3 cut(s) 382, 538, 546
Bsp13I TCCGGA 3 cut(s) 265, 280, 1266
Bsp143I GATC 5 cut(s) 304, 497, 736, 852, 1285
BspACI CCGC 4 cut(s) 43, 46, 159, 1320
BspANI GGCC 3 cut(s) 63, 363, 1258
BspCNI CTCAG 4 cut(s) 544, 690, 734, 1186
BspEI TCCGGA 3 cut(s) 265, 280, 1266
BspFNI CGCG 1 cut(s) 1322
BspHI TCATGA 1 cut(s) 874
BspLI GGNNCC 5 cut(s) 41, 145, 381, 1227, 1228
BspPI GGATC 2 cut(s) 492, 847
BspT107I GGYRCC 2 cut(s) 39, 143
BsrBI CCGCTC 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 393
BsrI ACTGG 1 cut(s) 12
BssAI RCCGGY 1 cut(s) 393
BssECI CCNNGG 2 cut(s) 122, 408
BssMI GATC 5 cut(s) 304, 497, 736, 852, 1285
BssNI GRCGYC 3 cut(s) 40, 939, 1123
BssSI CACGAG 1 cut(s) 1041
Bst2BI CACGAG 1 cut(s) 1041
Bst2UI CCWGG 4 cut(s) 365, 845, 857, 1082
Bst4CI ACNGT 1 cut(s) 1023
Bst6I CTCTTC 3 cut(s) 160, 905, 961
BstACI GRCGYC 3 cut(s) 40, 939, 1123
BstBAI YACGTR 1 cut(s) 1248
BstC8I GCNNGC 5 cut(s) 254, 395, 591, 1282, 1324
BstDEI CTNAG 5 cut(s) 552, 698, 721, 1073, 1194
BstDSI CCRYGG 1 cut(s) 122
BstF5I GGATG 1 cut(s) 1308
BstFNI CGCG 1 cut(s) 1322
BstH2I RGCGCY 1 cut(s) 43
BstHHI GCGC 3 cut(s) 42, 135, 1328
BstKTI GATC 5 cut(s) 307, 500, 739, 855, 1288
BstMAI GTCTC 4 cut(s) 219, 476, 907, 1224
BstMBI GATC 5 cut(s) 304, 497, 736, 852, 1285
BstMWI GCNNNNNNNGC 5 cut(s) 39, 141, 200, 329, 533
BstNI CCWGG 4 cut(s) 365, 845, 857, 1082
BstNSI RCATGY 1 cut(s) 593
BstSCI CCNGG 4 cut(s) 363, 843, 855, 1080
BstUI CGCG 1 cut(s) 1322
BstV1I GCAGC 1 cut(s) 536
BstX2I RGATCY 2 cut(s) 497, 852
BstYI RGATCY 2 cut(s) 497, 852
BsuRI GGCC 3 cut(s) 63, 363, 1258
BtgI CCRYGG 1 cut(s) 122
BtgZI GCGATG 1 cut(s) 14
BtsCI GGATG 1 cut(s) 1308
BtsI GCAGTG 1 cut(s) 1101
BtsIMutI CAGTG 2 cut(s) 966, 1101
Cac8I GCNNGC 5 cut(s) 254, 395, 591, 1282, 1324
CaiI CAGNNNCTG 2 cut(s) 766, 1168
CciI TCATGA 1 cut(s) 874
CfoI GCGC 3 cut(s) 42, 135, 1328
Cfr10I RCCGGY 1 cut(s) 393
Cfr13I GGNCC 4 cut(s) 361, 847, 1226, 1257
CseI GACGC 1 cut(s) 1112
CsiI ACCWGGT 2 cut(s) 843, 1080
Csp6I GTAC 2 cut(s) 247, 1056
CviAII CATG 7 cut(s) 586, 590, 618, 671, 875, 1103, 1329
CviQI GTAC 2 cut(s) 247, 1056
DdeI CTNAG 5 cut(s) 552, 698, 721, 1073, 1194
DinI GGCGCC 1 cut(s) 41
DpnI GATC 5 cut(s) 306, 499, 738, 854, 1287
DpnII GATC 5 cut(s) 304, 497, 736, 852, 1285
DraIII CACNNNGTG 1 cut(s) 1031
Eam1104I CTCTTC 3 cut(s) 160, 905, 961
EarI CTCTTC 3 cut(s) 160, 905, 961
Ecl136II GAGCTC 1 cut(s) 536
Eco24I GRGCYC 2 cut(s) 382, 538
Eco47I GGWCC 2 cut(s) 847, 1226
Eco53kI GAGCTC 1 cut(s) 536
Eco57I CTGAAG 2 cut(s) 666, 942
Eco88I CYCGRG 2 cut(s) 407, 612
EcoICRI GAGCTC 1 cut(s) 536
EcoO109I RGGNCCY 2 cut(s) 1226, 1257
EcoRI GAATTC 1 cut(s) 1014
EcoRII CCWGG 4 cut(s) 363, 843, 855, 1080
EcoT22I ATGCAT 4 cut(s) 420, 591, 595, 1210
EcoT38I GRGCYC 2 cut(s) 382, 538
EgeI GGCGCC 1 cut(s) 41
EheI GGCGCC 1 cut(s) 41
FaeI CATG 7 cut(s) 589, 593, 621, 674, 878, 1106, 1332
FaqI GGGAC 2 cut(s) 691, 1239
FatI CATG 7 cut(s) 585, 589, 617, 670, 874, 1102, 1328
FauNDI CATATG 1 cut(s) 595
Fnu4HI GCNGC 3 cut(s) 43, 46, 525
FokI GGATG 1 cut(s) 1295
FriOI GRGCYC 2 cut(s) 382, 538
Fsp4HI GCNGC 3 cut(s) 43, 46, 525
FspAI RTGCGCAY 1 cut(s) 1327
FspBI CTAG 2 cut(s) 260, 528
FspI TGCGCA 1 cut(s) 1327
GlaI GCGC 3 cut(s) 41, 134, 1327
GluI GCNGC 3 cut(s) 43, 46, 525
GsuI CTGGAG 1 cut(s) 149
HaeII RGCGCY 1 cut(s) 43
HaeIII GGCC 3 cut(s) 63, 363, 1258
HapII CCGG 7 cut(s) 107, 141, 222, 266, 281, 394, 1267
HgaI GACGC 1 cut(s) 1112
HhaI GCGC 3 cut(s) 42, 135, 1328
Hin1I GRCGYC 3 cut(s) 40, 939, 1123
Hin1II CATG 7 cut(s) 589, 593, 621, 674, 878, 1106, 1332
Hin6I GCGC 3 cut(s) 40, 133, 1326
HinP1I GCGC 3 cut(s) 40, 133, 1326
HinfI GANTC 5 cut(s) 309, 368, 457, 646, 686
HpaII CCGG 7 cut(s) 107, 141, 222, 266, 281, 394, 1267
HphI GGTGA 5 cut(s) 73, 314, 326, 739, 767
Hpy166II GTNNAC 4 cut(s) 53, 758, 819, 862
Hpy188I TCNGA 6 cut(s) 103, 188, 373, 685, 724, 1164
Hpy8I GTNNAC 4 cut(s) 53, 758, 819, 862
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 1 cut(s) 1023
HpyCH4IV ACGT 2 cut(s) 939, 1247
HpyF10VI GCNNNNNNNGC 5 cut(s) 39, 141, 200, 329, 533
HpyF3I CTNAG 5 cut(s) 552, 698, 721, 1073, 1194
HpySE526I ACGT 2 cut(s) 939, 1247
Hsp92I GRCGYC 3 cut(s) 40, 939, 1123
Hsp92II CATG 7 cut(s) 589, 593, 621, 674, 878, 1106, 1332
HspAI GCGC 3 cut(s) 40, 133, 1326
KasI GGCGCC 1 cut(s) 39
KflI GGGWCCC 1 cut(s) 1226
Kpn2I TCCGGA 3 cut(s) 265, 280, 1266
KroI GCCGGC 1 cut(s) 393
KroNI GCCGGC 1 cut(s) 395
Kzo9I GATC 5 cut(s) 304, 497, 736, 852, 1285
LmnI GCTCC 5 cut(s) 130, 268, 283, 385, 435
Lsp1109I GCAGC 1 cut(s) 536
LweI GCATC 5 cut(s) 405, 1155, 1195, 1217, 1317
MabI ACCWGGT 2 cut(s) 843, 1080
MaeI CTAG 2 cut(s) 260, 528
MaeII ACGT 2 cut(s) 939, 1247
MaeIII GTNAC 4 cut(s) 604, 1023, 1076, 1243
MalI GATC 5 cut(s) 306, 499, 738, 854, 1287
MbiI CCGCTC 1 cut(s) 161
MboI GATC 5 cut(s) 304, 497, 736, 852, 1285
MboII GAAGA 6 cut(s) 147, 452, 875, 922, 948, 1079
MflI RGATCY 2 cut(s) 497, 852
MhlI GDGCHC 3 cut(s) 382, 538, 546
MluCI AATT 9 cut(s) 20, 284, 486, 515, 742, 782, 1014, 1178, 1187
Mly113I GGCGCC 1 cut(s) 40
MlyI GAGTC 2 cut(s) 318, 362
MmeI TCCRAC 3 cut(s) 429, 786, 879
MnlI CCTC 9 cut(s) 74, 98, 403, 411, 718, 879, 1069, 1189, 1270
Mph1103I ATGCAT 4 cut(s) 420, 591, 595, 1210
MroI TCCGGA 3 cut(s) 265, 280, 1266
MroNI GCCGGC 1 cut(s) 393
MseI TTAA 7 cut(s) 489, 1130, 1181, 1215, 1293, 1314, 1335
MslI CAYNNNNRTG 1 cut(s) 594
MspA1I CMGCKG 1 cut(s) 573
MspI CCGG 7 cut(s) 107, 141, 222, 266, 281, 394, 1267
MspR9I CCNGG 4 cut(s) 365, 845, 857, 1082
MvaI CCWGG 4 cut(s) 365, 845, 857, 1082
MvnI CGCG 1 cut(s) 1322
MwoI GCNNNNNNNGC 5 cut(s) 39, 141, 200, 329, 533
NaeI GCCGGC 1 cut(s) 395
NarI GGCGCC 1 cut(s) 40
NdeI CATATG 1 cut(s) 595
NdeII GATC 5 cut(s) 304, 497, 736, 852, 1285
NgoMIV GCCGGC 1 cut(s) 393
NlaIII CATG 7 cut(s) 589, 593, 621, 674, 878, 1106, 1332
NlaIV GGNNCC 5 cut(s) 41, 145, 381, 1227, 1228
NmeAIII GCCGAG 1 cut(s) 1099
NmuCI GTSAC 2 cut(s) 1023, 1076
NsbI TGCGCA 1 cut(s) 1327
NsiI ATGCAT 4 cut(s) 420, 591, 595, 1210
NspI RCATGY 1 cut(s) 593
PaeI GCATGC 1 cut(s) 593
PaeR7I CTCGAG 1 cut(s) 612
PagI TCATGA 1 cut(s) 874
PdiI GCCGGC 1 cut(s) 395
PfeI GAWTC 3 cut(s) 457, 646, 686
PflFI GACNNNGTC 2 cut(s) 845, 1082
PkrI GCNGC 3 cut(s) 44, 47, 526
PleI GAGTC 2 cut(s) 317, 362
PluTI GGCGCC 1 cut(s) 43
PpsI GAGTC 2 cut(s) 317, 362
Ppu21I YACGTR 1 cut(s) 1248
PpuMI RGGWCCY 1 cut(s) 1226
PshBI ATTAAT 1 cut(s) 489
Psp124BI GAGCTC 1 cut(s) 538
Psp5II RGGWCCY 1 cut(s) 1226
Psp6I CCWGG 4 cut(s) 363, 843, 855, 1080
PspGI CCWGG 4 cut(s) 363, 843, 855, 1080
PspN4I GGNNCC 5 cut(s) 41, 145, 381, 1227, 1228
PspPI GGNCC 4 cut(s) 361, 847, 1226, 1257
PspPPI RGGWCCY 1 cut(s) 1226
PstNI CAGNNNCTG 2 cut(s) 766, 1168
PsuI RGATCY 2 cut(s) 497, 852
PsyI GACNNNGTC 2 cut(s) 845, 1082
PvuII CAGCTG 1 cut(s) 573
RsaI GTAC 2 cut(s) 248, 1057
RsaNI GTAC 2 cut(s) 247, 1056
RseI CAYNNNNRTG 1 cut(s) 594
SacI GAGCTC 1 cut(s) 538
SaqAI TTAA 7 cut(s) 489, 1130, 1181, 1215, 1293, 1314, 1335
SatI GCNGC 3 cut(s) 43, 46, 525
Sau3AI GATC 5 cut(s) 304, 497, 736, 852, 1285
Sau96I GGNCC 4 cut(s) 361, 847, 1226, 1257
SchI GAGTC 2 cut(s) 318, 362
ScrFI CCNGG 4 cut(s) 365, 845, 857, 1082
SduI GDGCHC 3 cut(s) 382, 538, 546
SexAI ACCWGGT 2 cut(s) 843, 1080
SfaNI GCATC 5 cut(s) 405, 1155, 1195, 1217, 1317
SfoI GGCGCC 1 cut(s) 41
Sfr274I CTCGAG 1 cut(s) 612
SinI GGWCC 2 cut(s) 847, 1226
SlaI CTCGAG 1 cut(s) 612
SmiMI CAYNNNNRTG 1 cut(s) 594
SmlI CTYRAG 4 cut(s) 347, 539, 612, 750
SmoI CTYRAG 4 cut(s) 347, 539, 612, 750
SphI GCATGC 1 cut(s) 593
Sse9I AATT 9 cut(s) 20, 284, 486, 515, 742, 782, 1014, 1178, 1187
SsiI CCGC 4 cut(s) 43, 46, 159, 1320
SspDI GGCGCC 1 cut(s) 39
SspI AATATT 1 cut(s) 429
SspMI CTAG 2 cut(s) 260, 528
SstI GAGCTC 1 cut(s) 538
StyD4I CCNGG 4 cut(s) 363, 843, 855, 1080
TaaI ACNGT 1 cut(s) 1023
TaiI ACGT 2 cut(s) 942, 1250
TaqI TCGA 6 cut(s) 16, 167, 307, 613, 886, 1111
TasI AATT 9 cut(s) 20, 284, 486, 515, 742, 782, 1014, 1178, 1187
TauI GCSGC 2 cut(s) 45, 48
TfiI GAWTC 3 cut(s) 457, 646, 686
Tru1I TTAA 7 cut(s) 489, 1130, 1181, 1215, 1293, 1314, 1335
Tru9I TTAA 7 cut(s) 489, 1130, 1181, 1215, 1293, 1314, 1335
TscAI CASTG 2 cut(s) 966, 1101
TseFI GTSAC 2 cut(s) 1023, 1076
TseI GCWGC 1 cut(s) 524
Tsp45I GTSAC 2 cut(s) 1023, 1076
TspDTI ATGAA 2 cut(s) 574, 1104
TspGWI ACGGA 2 cut(s) 234, 1187
TspRI CASTG 2 cut(s) 966, 1101
Tth111I GACNNNGTC 2 cut(s) 845, 1082
VpaK11BI GGWCC 2 cut(s) 847, 1226
VspI ATTAAT 1 cut(s) 489
XapI RAATTY 3 cut(s) 515, 782, 1014
XceI RCATGY 1 cut(s) 593
XhoI CTCGAG 1 cut(s) 612
XspI CTAG 2 cut(s) 260, 528
ZraI GACGTC 1 cut(s) 940
Zsp2I ATGCAT 4 cut(s) 420, 591, 595, 1210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.