Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000136

Physical Location & Seq

Genomic Coordinates Reverse (-)

16593374 .. 16596621

Gene Structure 3248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g22855.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGCCATCACCCAACCCTCACTCTCTCCCTCTCCACCAGATTCGGCCTCCCTCTCCACCAAATCTGATCCGGTCTCCTCCCTCTCCGAATTGCCCGTACCCGAACCCGAACCCGAACCCTTCGTCTAGCTCCTTCAACTCAACGTCGCCGCCTCCAAGAGTCGAACCCGCCACCAGATCGTTGTCTACTCCCTCGACGTCGTCGTCGAGTCAGGCTCGGTTTGTGTGGTGGTGTGTGGTGGTGGCGCGTGGTGGTGTGTGGTGGTGTTTGGTGGTACCAGCTGATGCAACAAGTGGCCATGAGGCTTGGAGGGAGTCCATAGGAGAGGGAGATCTTGAGGCCACTACCCATTTTGATTCAACTTCTGATGATGTCACTGGTCACCATGATCCTCCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0008150 GO:0008152 GO:0009850 GO:0009987 GO:0010178 GO:0010179 GO:0010817 GO:0012505 GO:0016787 GO:0016810 GO:0042445 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

134

Amino Acids

14.28

Weight (kDa)

5.77

Isoelectric Point (pI)

75.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica	MD16G1158000.v1.1
prunus_persica	Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata	RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora	Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa	Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha	Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana	Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	202
AatII	GACGTC	1 cut(s)	200
Acc65I	GGTACC	1 cut(s)	274
AccB1I	GGYRCC	1 cut(s)	274
AccI	GTMKAC	1 cut(s)	185
AccII	CGCG	1 cut(s)	247
AciI	CCGC	2 cut(s)	149, 168
AclWI	GGATC	2 cut(s)	61, 383
AcoI	YGGCCR	1 cut(s)	295
AcyI	GRCGYC	1 cut(s)	197
AfaI	GTAC	2 cut(s)	98, 276
AgsI	TTSAA	2 cut(s)	136, 360
AluBI	AGCT	2 cut(s)	129, 281
AluI	AGCT	2 cut(s)	129, 281
Alw26I	GTCTC	1 cut(s)	78
AlwI	GGATC	2 cut(s)	61, 383
AoxI	GGCC	3 cut(s)	44, 295, 339
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
Asp718I	GGTACC	1 cut(s)	274
AspLEI	GCGC	1 cut(s)	247
AsuHPI	GGTGA	1 cut(s)	374
BalI	TGGCCA	1 cut(s)	297
BanI	GGYRCC	1 cut(s)	274
BccI	CCATC	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	1 cut(s)	126
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	150
BmiI	GGNNCC	1 cut(s)	276
BmsI	GCATC	1 cut(s)	274
BplI	GAGNNNNNCTC	2 cut(s)	199, 231
BpuEI	CTTGAG	1 cut(s)	356
BsaHI	GRCGYC	1 cut(s)	197
BsaI	GGTCTC	1 cut(s)	78
BsaWI	WCCGGW	1 cut(s)	69
Bse1I	ACTGG	1 cut(s)	382
BseNI	ACTGG	1 cut(s)	382
BseRI	GAGGAG	1 cut(s)	66
Bsh1236I	CGCG	1 cut(s)	247
BshFI	GGCC	3 cut(s)	46, 297, 341
BshNI	GGYRCC	1 cut(s)	274
BsiSI	CCGG	1 cut(s)	70
BsmAI	GTCTC	1 cut(s)	78
BsnI	GGCC	3 cut(s)	46, 297, 341
Bso31I	GGTCTC	1 cut(s)	78
Bsp143I	GATC	4 cut(s)	66, 176, 331, 388
BspACI	CCGC	2 cut(s)	149, 168
BspANI	GGCC	3 cut(s)	46, 297, 341
BspFNI	CGCG	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	276
BspPI	GGATC	2 cut(s)	61, 383
BspT107I	GGYRCC	1 cut(s)	274
BspTNI	GGTCTC	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	382
BssMI	GATC	4 cut(s)	66, 176, 331, 388
BssNI	GRCGYC	1 cut(s)	197
BstACI	GRCGYC	1 cut(s)	197
BstEII	GGTNACC	1 cut(s)	380
BstFNI	CGCG	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	4 cut(s)	69, 179, 334, 391
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	4 cut(s)	66, 176, 331, 388
BstPI	GGTNACC	1 cut(s)	380
BstUI	CGCG	1 cut(s)	247
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	3 cut(s)	46, 297, 341
BtsIMutI	CAGTG	1 cut(s)	375
CfoI	GCGC	1 cut(s)	247
Csp6I	GTAC	2 cut(s)	97, 275
CviAII	CATG	3 cut(s)	299, 386, 399
CviJI	RGCY	7 cut(s)	46, 129, 215, 281, 297, 305, 341
CviKI_1	RGCY	7 cut(s)	46, 129, 215, 281, 297, 305, 341
CviQI	GTAC	2 cut(s)	97, 275
DpnI	GATC	4 cut(s)	68, 178, 333, 390
DpnII	GATC	4 cut(s)	66, 176, 331, 388
DrdI	GACNNNNNNGTC	1 cut(s)	202
DseDI	GACNNNNNNGTC	1 cut(s)	202
EaeI	YGGCCR	1 cut(s)	295
Eco31I	GGTCTC	1 cut(s)	78
Eco91I	GGTNACC	1 cut(s)	380
EcoO65I	GGTNACC	1 cut(s)	380
FaeI	CATG	3 cut(s)	302, 389, 402
FaiI	YATR	4 cut(s)	300, 320, 387, 400
FatI	CATG	3 cut(s)	298, 385, 398
FauI	CCCGC	1 cut(s)	175
FblI	GTMKAC	1 cut(s)	185
Fnu4HI	GCNGC	1 cut(s)	149
Fsp4HI	GCNGC	1 cut(s)	149
FspBI	CTAG	1 cut(s)	126
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	1 cut(s)	149
HaeIII	GGCC	3 cut(s)	46, 297, 341
HapII	CCGG	1 cut(s)	70
HhaI	GCGC	1 cut(s)	247
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	3 cut(s)	302, 389, 402
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HinfI	GANTC	5 cut(s)	40, 159, 208, 314, 356
HpaII	CCGG	1 cut(s)	70
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	3 cut(s)	66, 87, 367
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	1 cut(s)	186
Hpy99I	CGWCG	5 cut(s)	148, 199, 202, 205, 208
HpyAV	CCTTC	2 cut(s)	129, 142
HpyCH4IV	ACGT	2 cut(s)	143, 197
HpyCH4V	TGCA	2 cut(s)	287, 398
HpySE526I	ACGT	2 cut(s)	143, 197
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	3 cut(s)	302, 389, 402
HspAI	GCGC	1 cut(s)	245
KpnI	GGTACC	1 cut(s)	278
Kzo9I	GATC	4 cut(s)	66, 176, 331, 388
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	6 cut(s)	50, 83, 187, 197, 291, 363
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	1 cut(s)	126
MaeII	ACGT	2 cut(s)	143, 197
MaeIII	GTNAC	2 cut(s)	373, 380
MalI	GATC	4 cut(s)	68, 178, 333, 390
MboI	GATC	4 cut(s)	66, 176, 331, 388
MflI	RGATCY	1 cut(s)	331
MlsI	TGGCCA	1 cut(s)	297
MluCI	AATT	1 cut(s)	88
MluNI	TGGCCA	1 cut(s)	297
MlyI	GAGTC	3 cut(s)	168, 217, 323
Mox20I	TGGCCA	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	297
Msp20I	TGGCCA	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	1 cut(s)	70
MvnI	CGCG	1 cut(s)	247
NdeII	GATC	4 cut(s)	66, 176, 331, 388
NlaIII	CATG	3 cut(s)	302, 389, 402
NlaIV	GGNNCC	1 cut(s)	276
NmuCI	GTSAC	2 cut(s)	373, 380
PcsI	WCGNNNNNNNCGW	2 cut(s)	200, 203
PfeI	GAWTC	2 cut(s)	40, 356
PflFI	GACNNNGTC	1 cut(s)	199
PkrI	GCNGC	1 cut(s)	150
PleI	GAGTC	3 cut(s)	167, 216, 322
PpsI	GAGTC	3 cut(s)	167, 216, 322
PspEI	GGTNACC	1 cut(s)	380
PspN4I	GGNNCC	1 cut(s)	276
PsuI	RGATCY	1 cut(s)	331
PsyI	GACNNNGTC	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	2 cut(s)	98, 276
RsaNI	GTAC	2 cut(s)	97, 275
SatI	GCNGC	1 cut(s)	149
Sau3AI	GATC	4 cut(s)	66, 176, 331, 388
SchI	GAGTC	3 cut(s)	168, 217, 323
SetI	ASST	4 cut(s)	131, 146, 200, 283
SfaNI	GCATC	1 cut(s)	274
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	1 cut(s)	88
SsiI	CCGC	2 cut(s)	149, 168
SspMI	CTAG	1 cut(s)	126
TaiI	ACGT	2 cut(s)	146, 200
TaqI	TCGA	3 cut(s)	162, 194, 206
TasI	AATT	1 cut(s)	88
TauI	GCSGC	1 cut(s)	151
TfiI	GAWTC	2 cut(s)	40, 356
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	2 cut(s)	373, 380
Tsp45I	GTSAC	2 cut(s)	373, 380
TspRI	CASTG	1 cut(s)	382
Tth111I	GACNNNGTC	1 cut(s)	199
XmiI	GTMKAC	1 cut(s)	185
XspI	CTAG	1 cut(s)	126
ZraI	GACGTC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.