Rmu_sc0002372.1_g000033

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002372.1
OG0000136
Physical Location & Seq
Reverse (-)
142669 .. 143515
847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002372.1_g000033.1.cds

Sequence Viewer

Length: 654 bp
atggataagagttggattgatatacgagaaacggactggcataaatatgaagatggagttgatagttttttggagtttgcattcgccaacagcgttgatccaacaaggataaagtgtccttgtaagctatgtcggaatcgctattttaagtctagggaggaagcaagagaggatatactggtagacggattttgggaaacgtatagaatatgggataaacatggtgaaccttccggacctgcagctccatgccaaggtaatggggttaactctgattcgatcatcatggatgatatgtttggcatgattaatgaggcgattgggattcccactgcaaatcctgttgtgaaaagtttacgaaattgtcattcattgtacgactattacacttggaatgccatgccagacgatattttggatgccatttggaaagatgtcaaggataatacggatgttccggatgagtataaacaacattgcttaatggttgttggtagtagatggagggactggaagtgccgagtcaagacaaaatggtatgataaatatgaaacggatgagcaacgattagcattcattcctaatcaggttgttggagagcagtggaagatattagtaaaatattggggtcttccgcaaataaaggtaaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23 Transposase_24

Protein Analysis

217

Amino Acids

25.59

Weight (kDa)

5.19

Isoelectric Point (pI)

27.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 247
AccI GTMKAC 1 cut(s) 183
AccIII TCCGGA 2 cut(s) 233, 457
AciI CCGC 1 cut(s) 635
AclWI GGATC 1 cut(s) 92
AfaI GTAC 1 cut(s) 377
AfiI CCNNNNNNNGG 1 cut(s) 254
AluBI AGCT 2 cut(s) 127, 245
AluI AGCT 2 cut(s) 127, 245
AlwI GGATC 1 cut(s) 92
Aor13HI TCCGGA 2 cut(s) 233, 457
ApeKI GCWGC 1 cut(s) 242
AseI ATTAAT 1 cut(s) 309
AspS9I GGNCC 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 236
AvaII GGWCC 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 623
BbvI GCAGC 1 cut(s) 254
BccI CCATC 2 cut(s) 47, 495
BfaI CTAG 1 cut(s) 153
BfmI CTRYAG 1 cut(s) 240
BfuAI ACCTGC 1 cut(s) 247
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
Bme18I GGWCC 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 236
BmsI GCATC 1 cut(s) 409
BpiI GAAGAC 1 cut(s) 623
BsaJI CCNNGG 1 cut(s) 253
BsaWI WCCGGW 2 cut(s) 233, 457
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse1I ACTGG 3 cut(s) 41, 183, 515
Bse3DI GCAATG 1 cut(s) 475
BseAI TCCGGA 2 cut(s) 233, 457
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 5 cut(s) 295, 424, 457, 466, 562
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMI GCAATG 1 cut(s) 475
BseNI ACTGG 3 cut(s) 41, 183, 515
BseXI GCAGC 1 cut(s) 254
BsiSI CCGG 2 cut(s) 234, 458
BslFI GGGAC 1 cut(s) 521
BslI CCNNNNNNNGG 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 521
BsmI GAATGC 3 cut(s) 80, 400, 572
Bsp13I TCCGGA 2 cut(s) 233, 457
Bsp143I GATC 2 cut(s) 97, 279
BspACI CCGC 1 cut(s) 635
BspEI TCCGGA 2 cut(s) 233, 457
BspMAI CTGCAG 1 cut(s) 244
BspMI ACCTGC 1 cut(s) 247
BspPI GGATC 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 475
BsrI ACTGG 3 cut(s) 41, 183, 515
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 2 cut(s) 97, 279
BssT1I CCWWGG 1 cut(s) 253
BstF5I GGATG 5 cut(s) 295, 424, 457, 466, 562
BstKTI GATC 2 cut(s) 100, 282
BstMBI GATC 2 cut(s) 97, 279
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 254
BstV2I GAAGAC 1 cut(s) 623
BstXI CCANNNNNNTGG 1 cut(s) 260
BtsCI GGATG 5 cut(s) 295, 424, 457, 466, 562
BtsI GCAGTG 2 cut(s) 330, 608
BtsIMutI CAGTG 2 cut(s) 330, 608
BveI ACCTGC 1 cut(s) 247
Cfr13I GGNCC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 376
CviAII CATG 5 cut(s) 221, 249, 286, 304, 400
CviJI RGCY 2 cut(s) 127, 245
CviKI_1 RGCY 2 cut(s) 127, 245
CviQI GTAC 1 cut(s) 376
DpnI GATC 2 cut(s) 99, 281
DpnII GATC 2 cut(s) 97, 279
Eco130I CCWWGG 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 253
FaeI CATG 5 cut(s) 224, 252, 289, 307, 403
FaqI GGGAC 1 cut(s) 521
FatI CATG 5 cut(s) 220, 248, 285, 303, 399
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 1 cut(s) 243
FokI GGATG 5 cut(s) 302, 431, 464, 473, 569
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 1 cut(s) 153
GluI GCNGC 1 cut(s) 243
HapII CCGG 2 cut(s) 234, 458
Hin1II CATG 5 cut(s) 224, 252, 289, 307, 403
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 4 cut(s) 136, 275, 325, 522
HpaI GTTAAC 1 cut(s) 268
HpaII CCGG 2 cut(s) 234, 458
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 4 cut(s) 184, 227, 268, 356
Hpy188I TCNGA 2 cut(s) 135, 274
Hpy188III TCNNGA 3 cut(s) 234, 458, 526
Hpy8I GTNNAC 4 cut(s) 184, 227, 268, 356
HpyAV CCTTC 1 cut(s) 240
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 3 cut(s) 80, 242, 335
HpySE526I ACGT 1 cut(s) 200
Hsp92II CATG 5 cut(s) 224, 252, 289, 307, 403
Kpn2I TCCGGA 2 cut(s) 233, 457
KspAI GTTAAC 1 cut(s) 268
Kzo9I GATC 2 cut(s) 97, 279
LmnI GCTCC 1 cut(s) 250
LpnPI CCDG 9 cut(s) 22, 164, 247, 252, 354, 417, 471, 496, 572
Lsp1109I GCAGC 1 cut(s) 254
LweI GCATC 1 cut(s) 409
MaeI CTAG 1 cut(s) 153
MaeII ACGT 1 cut(s) 200
MalI GATC 2 cut(s) 99, 281
MboI GATC 2 cut(s) 97, 279
MboII GAAGA 3 cut(s) 62, 619, 623
MluCI AATT 2 cut(s) 361, 649
MlyI GAGTC 1 cut(s) 531
MmeI TCCRAC 3 cut(s) 113, 125, 574
MnlI CCTC 4 cut(s) 151, 163, 307, 498
MroI TCCGGA 2 cut(s) 233, 457
MseI TTAA 4 cut(s) 147, 267, 309, 482
MslI CAYNNNNRTG 1 cut(s) 45
MspI CCGG 2 cut(s) 234, 458
Mva1269I GAATGC 3 cut(s) 80, 400, 572
NdeII GATC 2 cut(s) 97, 279
NlaIII CATG 5 cut(s) 224, 252, 289, 307, 403
NmeAIII GCCGAG 1 cut(s) 545
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PctI GAATGC 3 cut(s) 80, 400, 572
PfeI GAWTC 3 cut(s) 136, 275, 325
PkrI GCNGC 1 cut(s) 244
PleI GAGTC 1 cut(s) 530
PpsI GAGTC 1 cut(s) 530
PshBI ATTAAT 1 cut(s) 309
PspPI GGNCC 1 cut(s) 236
PstI CTGCAG 1 cut(s) 244
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
RseI CAYNNNNRTG 1 cut(s) 45
SaqAI TTAA 4 cut(s) 147, 267, 309, 482
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 2 cut(s) 97, 279
Sau96I GGNCC 1 cut(s) 236
SchI GAGTC 1 cut(s) 531
SetI ASST 8 cut(s) 129, 203, 232, 241, 247, 259, 591, 648
SfaNI GCATC 1 cut(s) 409
SfcI CTRYAG 1 cut(s) 240
SinI GGWCC 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 45
Sse9I AATT 2 cut(s) 361, 649
SsiI CCGC 1 cut(s) 635
SspI AATATT 1 cut(s) 623
SspMI CTAG 1 cut(s) 153
StyI CCWWGG 1 cut(s) 253
TaiI ACGT 1 cut(s) 203
TaqI TCGA 1 cut(s) 278
TasI AATT 2 cut(s) 361, 649
TfiI GAWTC 3 cut(s) 136, 275, 325
Tru1I TTAA 4 cut(s) 147, 267, 309, 482
Tru9I TTAA 4 cut(s) 147, 267, 309, 482
TscAI CASTG 2 cut(s) 337, 608
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 4 cut(s) 63, 360, 564, 565
TspGWI ACGGA 4 cut(s) 47, 201, 464, 569
TspRI CASTG 2 cut(s) 337, 608
VpaK11BI GGWCC 1 cut(s) 236
VspI ATTAAT 1 cut(s) 309
XmiI GTMKAC 1 cut(s) 183
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.