FvH4_3g22860

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000136
Physical Location & Seq
Forward (+)
16013337 .. 16015307
1971 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22860.t1

Sequence Viewer

Length: 1092 bp
ATGGGTGAGTTTTTGAAATCAAGTGCATCTAATACATCAAGCAGCAGCACCTCATCAATGCCGTCCACAAAGTCGTCACATTTGCCGCCTCCACCACCACCCACTCAAATGCCACTCCCTCCACCGCCACTGCCACCACCACCATCCCCTCCAACAGCAGAAATGGAAGCAGAAGATACTACTGTAAATGGCAGAGGCCATAGTAAGGGTATTCCAGAGTGGAACACAGGAGTTAAAGTCGAAGTCCTTTTGGATTCGAACTTTCAACCTGTGGGAGATAGGGCTGCCCAATTAAAGTCGCAATTGGGAAAAATTGTTCGAGATGGGCAAAGGATTCCCCTGACAATAATGGATTGGAAGTCTGTTGGCAAGAAGGTGAAAGACGAAATATGGAAGGAGGTTCAGTTTGAGAAGAACAAGGATGATCCAGATCTTGTAAACAATCCTCCTGCACATATTGTGATGGAGCAATGGGCTGACCTGGTTGCTTACTGGAGTAGTGAGGATGCTAAGATGATATCTAGAAGAAATTCGTGCAACCGAGAGCTGCGTGGACCGGTTCATAATACTGGTCGAAAACACTTTGCTCAACTACGCTATGAGATGCAGCAAATTGGAGAAGAAACTGATAAGATGGGTGTGTGGAAAAAAGCGCGAGACACATCAGTAGCTGAAGCAATTGCAGACTATGAGGAGCGTCTTTTAAAGGAACCTGAGGACCAGAGGAACCTTAAGGCTGTTAAAGACCGAGTATTTCATTCAGTGATGAGGGAGGATGGACATGGGTATTGTCGTACTTATGGATCTGGTGTGCCTCGAAATTTTGTGTATTCACAGTCATCAACCCCATTTGCAAATTCTAATGATTTGATTCAAAAATTAACTGAATCTATTGCAAAGCACTTTGAGGAAAAGTTTGAGAGGATGGAAGCTCGACTAAATTCTCTAGAGAACAAGGAGAGGAATCACAATGGACAGGTTCTGGATGCAAGTAGTGGTTATGAAATAGACCGGAGAGAGTCCATTGGCGAACAACCACATTCACCTTCTGCTCCATCGCAACCAATTACCGAAGGGAGTAAACAAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23 Transposase_24

Protein Analysis

364

Amino Acids

40.77

Weight (kDa)

6.24

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 156 - 271 1.2e-17 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 655
AciI CCGC 2 cut(s) 86, 125
AclWI GGATC 2 cut(s) 419, 811
AcsI RAATTY 4 cut(s) 529, 820, 856, 940
AcuI CTGAAG 1 cut(s) 693
AfaI GTAC 1 cut(s) 796
AfiI CCNNNNNNNGG 1 cut(s) 205
AflII CTTAAG 1 cut(s) 731
AgeI ACCGGT 1 cut(s) 556
AgsI TTSAA 3 cut(s) 16, 266, 875
AjnI CCWGG 1 cut(s) 480
AloI GAACNNNNNNTCC 2 cut(s) 300, 332
AluBI AGCT 3 cut(s) 547, 671, 932
AluI AGCT 3 cut(s) 547, 671, 932
Alw26I GTCTC 1 cut(s) 651
AlwI GGATC 2 cut(s) 419, 811
AlwNI CAGNNNCTG 2 cut(s) 671, 982
AoxI GGCC 1 cut(s) 196
ApeKI GCWGC 5 cut(s) 42, 45, 284, 547, 607
ApoI RAATTY 4 cut(s) 529, 820, 856, 940
AsiGI ACCGGT 1 cut(s) 556
Asp700I GAANNNNTTC 1 cut(s) 529
AspLEI GCGC 1 cut(s) 655
AspS9I GGNCC 2 cut(s) 554, 718
AsuHPI GGTGA 3 cut(s) 17, 388, 1035
AsuII TTCGAA 1 cut(s) 257
AvaII GGWCC 2 cut(s) 554, 718
AxyI CCTNAGG 1 cut(s) 714
BaeI ACNNNNGTAYC 2 cut(s) 168, 201
BbvI GCAGC 5 cut(s) 54, 57, 271, 534, 619
BccI CCATC 7 cut(s) 151, 317, 457, 628, 770, 919, 1063
BceAI ACGGC 1 cut(s) 46
BciT130I CCWGG 1 cut(s) 482
BcoDI GTCTC 1 cut(s) 651
BfaI CTAG 2 cut(s) 522, 947
BfrI CTTAAG 1 cut(s) 731
BglII AGATCT 1 cut(s) 430
BisI GCNGC 6 cut(s) 43, 46, 86, 285, 548, 608
BlsI GCNGC 6 cut(s) 44, 47, 87, 286, 549, 609
Bme1390I CCNGG 1 cut(s) 482
Bme18I GGWCC 2 cut(s) 554, 718
BmgT120I GGNCC 2 cut(s) 554, 718
BmiI GGNNCC 2 cut(s) 711, 728
BmrFI CCNGG 1 cut(s) 482
BmsI GCATC 4 cut(s) 35, 496, 594, 976
BpmI CTGGAG 1 cut(s) 514
Bpu14I TTCGAA 1 cut(s) 257
BsaBI GATNNNNATC 1 cut(s) 429
BsaWI WCCGGW 2 cut(s) 556, 1011
BsaXI ACNNNNNCTCC 4 cut(s) 222, 252, 389, 419
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse118I RCCGGY 1 cut(s) 556
Bse1I ACTGG 2 cut(s) 497, 574
Bse21I CCTNAGG 1 cut(s) 714
Bse3DI GCAATG 1 cut(s) 476
Bse8I GATNNNNATC 1 cut(s) 429
BseBI CCWGG 1 cut(s) 482
BseGI GGATG 6 cut(s) 143, 427, 511, 781, 930, 991
BseJI GATNNNNATC 1 cut(s) 429
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMI GCAATG 1 cut(s) 476
BseMII CTCAG 1 cut(s) 705
BseNI ACTGG 2 cut(s) 497, 574
BseRI GAGGAG 1 cut(s) 707
BseXI GCAGC 5 cut(s) 54, 57, 271, 534, 619
BsgI GTGCAG 1 cut(s) 435
Bsh1236I CGCG 1 cut(s) 655
BshFI GGCC 1 cut(s) 198
BshTI ACCGGT 1 cut(s) 556
BsiSI CCGG 2 cut(s) 557, 1012
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 651
BsnI GGCC 1 cut(s) 198
Bsp119I TTCGAA 1 cut(s) 257
Bsp143I GATC 3 cut(s) 424, 430, 803
BspACI CCGC 2 cut(s) 86, 125
BspANI GGCC 1 cut(s) 198
BspCNI CTCAG 1 cut(s) 706
BspFNI CGCG 1 cut(s) 655
BspLI GGNNCC 2 cut(s) 711, 728
BspPI GGATC 2 cut(s) 419, 811
BspT104I TTCGAA 1 cut(s) 257
BspTI CTTAAG 1 cut(s) 731
BsrDI GCAATG 1 cut(s) 476
BsrFI RCCGGY 1 cut(s) 556
BsrI ACTGG 2 cut(s) 497, 574
BssAI RCCGGY 1 cut(s) 556
BssMI GATC 3 cut(s) 424, 430, 803
Bst2UI CCWGG 1 cut(s) 482
Bst4CI ACNGT 2 cut(s) 184, 837
BstAFI CTTAAG 1 cut(s) 731
BstBI TTCGAA 1 cut(s) 257
BstDEI CTNAG 2 cut(s) 510, 714
BstF5I GGATG 6 cut(s) 143, 427, 511, 781, 930, 991
BstFNI CGCG 1 cut(s) 655
BstHHI GCGC 1 cut(s) 655
BstKTI GATC 3 cut(s) 427, 433, 806
BstMAI GTCTC 1 cut(s) 651
BstMBI GATC 3 cut(s) 424, 430, 803
BstNI CCWGG 1 cut(s) 482
BstSCI CCNGG 1 cut(s) 480
BstUI CGCG 1 cut(s) 655
BstV1I GCAGC 5 cut(s) 54, 57, 271, 534, 619
BstX2I RGATCY 2 cut(s) 430, 803
BstYI RGATCY 2 cut(s) 430, 803
Bsu36I CCTNAGG 1 cut(s) 714
BsuRI GGCC 1 cut(s) 198
BtgZI GCGATG 1 cut(s) 1041
BtsCI GGATG 6 cut(s) 143, 427, 511, 781, 930, 991
BtsI GCAGTG 1 cut(s) 128
BtsIMutI CAGTG 2 cut(s) 128, 768
CaiI CAGNNNCTG 2 cut(s) 671, 982
CfoI GCGC 1 cut(s) 655
Cfr10I RCCGGY 1 cut(s) 556
Cfr13I GGNCC 2 cut(s) 554, 718
CseI GACGC 1 cut(s) 686
CsiI ACCWGGT 1 cut(s) 480
Csp6I GTAC 1 cut(s) 795
CspAI ACCGGT 1 cut(s) 556
CviAII CATG 1 cut(s) 782
CviJI RGCY 7 cut(s) 198, 284, 476, 547, 671, 737, 932
CviKI_1 RGCY 7 cut(s) 198, 284, 476, 547, 671, 737, 932
CviQI GTAC 1 cut(s) 795
DdeI CTNAG 2 cut(s) 510, 714
DpnI GATC 3 cut(s) 426, 432, 805
DpnII GATC 3 cut(s) 424, 430, 803
DraI TTTAAA 1 cut(s) 705
Eco32I GATATC 1 cut(s) 519
Eco47I GGWCC 2 cut(s) 554, 718
Eco57I CTGAAG 1 cut(s) 693
Eco81I CCTNAGG 1 cut(s) 714
EcoRII CCWGG 1 cut(s) 480
EcoRV GATATC 1 cut(s) 519
FaeI CATG 1 cut(s) 785
FaiI YATR 9 cut(s) 201, 391, 456, 564, 600, 690, 783, 801, 1002
FatI CATG 1 cut(s) 781
Fnu4HI GCNGC 6 cut(s) 43, 46, 86, 285, 548, 608
FokI GGATG 6 cut(s) 130, 434, 518, 788, 937, 998
Fsp4HI GCNGC 6 cut(s) 43, 46, 86, 285, 548, 608
FspBI CTAG 2 cut(s) 522, 947
GlaI GCGC 1 cut(s) 654
GluI GCNGC 6 cut(s) 43, 46, 86, 285, 548, 608
GsuI CTGGAG 1 cut(s) 514
HaeIII GGCC 1 cut(s) 198
HapII CCGG 2 cut(s) 557, 1012
HgaI GACGC 1 cut(s) 686
HhaI GCGC 1 cut(s) 655
Hin1II CATG 1 cut(s) 785
Hin6I GCGC 1 cut(s) 653
HinP1I GCGC 1 cut(s) 653
HinfI GANTC 6 cut(s) 254, 334, 871, 887, 964, 1019
HpaII CCGG 2 cut(s) 557, 1012
HphI GGTGA 3 cut(s) 17, 388, 1035
Hpy166II GTNNAC 4 cut(s) 66, 439, 554, 1082
Hpy188III TCNNGA 6 cut(s) 215, 320, 428, 522, 947, 983
Hpy8I GTNNAC 4 cut(s) 66, 439, 554, 1082
HpyAV CCTTC 4 cut(s) 367, 388, 1056, 1067
HpyCH4III ACNGT 2 cut(s) 184, 837
HpyCH4V TGCA 8 cut(s) 26, 452, 537, 607, 683, 854, 896, 989
HpyF3I CTNAG 2 cut(s) 510, 714
Hsp92II CATG 1 cut(s) 785
HspAI GCGC 1 cut(s) 653
Kzo9I GATC 3 cut(s) 424, 430, 803
LmnI GCTCC 3 cut(s) 466, 694, 1057
Lsp1109I GCAGC 5 cut(s) 54, 57, 271, 534, 619
LweI GCATC 4 cut(s) 35, 496, 594, 976
MabI ACCWGGT 1 cut(s) 480
MaeI CTAG 2 cut(s) 522, 947
MaeIII GTNAC 1 cut(s) 75
MalI GATC 3 cut(s) 426, 432, 805
MboI GATC 3 cut(s) 424, 430, 803
MboII GAAGA 4 cut(s) 185, 424, 537, 632
MfeI CAATTG 2 cut(s) 302, 678
MflI RGATCY 2 cut(s) 430, 803
MlyI GAGTC 1 cut(s) 1028
MmeI TCCRAC 1 cut(s) 176
MroXI GAANNNNTTC 1 cut(s) 529
MseI TTAA 6 cut(s) 234, 293, 704, 732, 741, 881
MslI CAYNNNNRTG 1 cut(s) 107
MspCI CTTAAG 1 cut(s) 731
MspI CCGG 2 cut(s) 557, 1012
MspR9I CCNGG 1 cut(s) 482
MunI CAATTG 2 cut(s) 302, 678
MvaI CCWGG 1 cut(s) 482
MvnI CGCG 1 cut(s) 655
NdeII GATC 3 cut(s) 424, 430, 803
NlaIII CATG 1 cut(s) 785
NlaIV GGNNCC 2 cut(s) 711, 728
NmuCI GTSAC 1 cut(s) 75
NspV TTCGAA 1 cut(s) 257
PdmI GAANNNNTTC 1 cut(s) 529
PfeI GAWTC 5 cut(s) 254, 334, 871, 887, 964
PinAI ACCGGT 1 cut(s) 556
PkrI GCNGC 6 cut(s) 44, 47, 87, 286, 549, 609
PleI GAGTC 1 cut(s) 1027
PpsI GAGTC 1 cut(s) 1027
Psp6I CCWGG 1 cut(s) 480
PspGI CCWGG 1 cut(s) 480
PspN4I GGNNCC 2 cut(s) 711, 728
PspPI GGNCC 2 cut(s) 554, 718
PstNI CAGNNNCTG 2 cut(s) 671, 982
PsuI RGATCY 2 cut(s) 430, 803
RsaI GTAC 1 cut(s) 796
RsaNI GTAC 1 cut(s) 795
RseI CAYNNNNRTG 1 cut(s) 107
SaqAI TTAA 6 cut(s) 234, 293, 704, 732, 741, 881
SatI GCNGC 6 cut(s) 43, 46, 86, 285, 548, 608
Sau3AI GATC 3 cut(s) 424, 430, 803
Sau96I GGNCC 2 cut(s) 554, 718
SchI GAGTC 1 cut(s) 1028
ScrFI CCNGG 1 cut(s) 482
SexAI ACCWGGT 1 cut(s) 480
SfaNI GCATC 4 cut(s) 35, 496, 594, 976
SfuI TTCGAA 1 cut(s) 257
SinI GGWCC 2 cut(s) 554, 718
SmiMI CAYNNNNRTG 1 cut(s) 107
SmlI CTYRAG 1 cut(s) 731
SmoI CTYRAG 1 cut(s) 731
SsiI CCGC 2 cut(s) 86, 125
SspMI CTAG 2 cut(s) 522, 947
StyD4I CCNGG 1 cut(s) 480
TaaI ACNGT 2 cut(s) 184, 837
TaqI TCGA 6 cut(s) 240, 257, 319, 574, 817, 934
TaqII GACCGA 1 cut(s) 762
TauI GCSGC 1 cut(s) 88
TfiI GAWTC 5 cut(s) 254, 334, 871, 887, 964
Tru1I TTAA 6 cut(s) 234, 293, 704, 732, 741, 881
Tru9I TTAA 6 cut(s) 234, 293, 704, 732, 741, 881
TscAI CASTG 2 cut(s) 135, 768
TseFI GTSAC 1 cut(s) 75
TseI GCWGC 5 cut(s) 42, 45, 284, 547, 607
Tsp45I GTSAC 1 cut(s) 75
TspDTI ATGAA 3 cut(s) 551, 746, 1017
TspRI CASTG 2 cut(s) 135, 768
Vha464I CTTAAG 1 cut(s) 731
VpaK11BI GGWCC 2 cut(s) 554, 718
XapI RAATTY 4 cut(s) 529, 820, 856, 940
XbaI TCTAGA 2 cut(s) 521, 946
XmnI GAANNNNTTC 1 cut(s) 529
XspI CTAG 2 cut(s) 522, 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.