Rh4CG268600

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000136
Physical Location & Seq
Forward (+)
52296406 .. 52306121
9716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG268600.1

Sequence Viewer

Length: 636 bp
ATGCCAGAAGATGAACAAGATGATACTTTTCGTGAAGAGGTATTTACTGAAGTGATGGGAGAAGATACACATGGGCGTGTTTGCATGTATGGAACAGGTGTAACTCCATCTCAAGTGTTTGGTAACTCAAAAACTTCTGAGACTACTGAAAAGAAGACAATTGAGGAAATGGAAAAGACAATTGAGGAAATGGAAAAAAAATACCAAACAAAGCTAGATGATCTCAAAGAAAGCCATGAATCTCAATTGGGAGACATGAAATTAAAGTACGAAGATGTGTCGAATCGTCTCAATCTTTTGATGGCACATGTTGGCGGGTTTGGCCGGTGCTGCGATGCAGGGTGGAGGCTGAAGGCTGCAACGCGAGCTGCTGGGTTGGACTGGGAGCGAGACGCACGACAGAGGGGAGGCCGCGCCGACAAGCAGGACGAGGGCAGAGGTTTGCGGCCTGGTGATGGAGGCCGGCTGACGGAGGAAGCGCTGGCCAAGAGGTCTGGGGCACCGGGACTTGGCCGGATTTGTTGCGCCGGGACGGGTATGGTGCTTGCTGGGCTGTGCGGGCTCTGGCGGTGCAGGGCGGAAGGAGGGTGTCTGTGCGGCCGGAAGAAGGATCTGGAGGGGAGGAGGCTGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23 Transposase_24

Protein Analysis

211

Amino Acids

23.36

Weight (kDa)

5.8

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 499
AccII CGCG 2 cut(s) 364, 414
AciI CCGC 7 cut(s) 315, 412, 445, 558, 568, 578, 597
AclWI GGATC 1 cut(s) 618
AcoI YGGCCR 4 cut(s) 322, 483, 511, 598
AcuI CTGAAG 2 cut(s) 69, 371
AfaI GTAC 1 cut(s) 269
AfeI AGCGCT 1 cut(s) 480
AfiI CCNNNNNNNGG 4 cut(s) 455, 469, 509, 607
AflIII ACRYGT 1 cut(s) 307
AjnI CCWGG 1 cut(s) 448
AluBI AGCT 2 cut(s) 214, 368
AluI AGCT 2 cut(s) 214, 368
Alw26I GTCTC 4 cut(s) 134, 246, 293, 384
AlwI GGATC 1 cut(s) 618
Aor51HI AGCGCT 1 cut(s) 480
AoxI GGCC 7 cut(s) 322, 409, 446, 460, 483, 511, 598
ApeKI GCWGC 3 cut(s) 330, 356, 368
AspLEI GCGC 3 cut(s) 416, 481, 527
AsuC2I CCSGG 2 cut(s) 504, 529
AsuHPI GGTGA 1 cut(s) 464
BaeGI GKGCMC 1 cut(s) 502
BalI TGGCCA 1 cut(s) 485
BanI GGYRCC 1 cut(s) 499
BanII GRGCYC 1 cut(s) 564
BbsI GAAGAC 1 cut(s) 161
BbvI GCAGC 3 cut(s) 317, 343, 355
BccI CCATC 4 cut(s) 49, 115, 295, 449
BciT130I CCWGG 1 cut(s) 450
BcnI CCSGG 2 cut(s) 504, 529
BcoDI GTCTC 4 cut(s) 134, 246, 293, 384
BfaI CTAG 2 cut(s) 215, 634
BfoI RGCGCY 1 cut(s) 482
BisI GCNGC 6 cut(s) 331, 357, 369, 412, 446, 598
BlsI GCNGC 6 cut(s) 332, 358, 370, 413, 447, 599
Bme1390I CCNGG 3 cut(s) 450, 504, 529
BmiI GGNNCC 1 cut(s) 501
BmrFI CCNGG 3 cut(s) 450, 504, 529
BmrI ACTGGG 1 cut(s) 391
BmsI GCATC 1 cut(s) 325
BmuI ACTGGG 1 cut(s) 391
BpiI GAAGAC 1 cut(s) 161
BpmI CTGGAG 1 cut(s) 635
BpuEI CTTGAG 1 cut(s) 96
BpuMI CCSGG 2 cut(s) 504, 529
Bsc4I CCNNNNNNNGG 4 cut(s) 455, 469, 509, 607
Bse118I RCCGGY 2 cut(s) 324, 462
Bse1I ACTGG 1 cut(s) 386
BseBI CCWGG 1 cut(s) 450
BseLI CCNNNNNNNGG 4 cut(s) 455, 469, 509, 607
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 386
BseSI GKGCMC 1 cut(s) 502
BseX3I CGGCCG 1 cut(s) 598
BseXI GCAGC 3 cut(s) 317, 343, 355
BseYI CCCAGC 2 cut(s) 371, 548
BsgI GTGCAG 1 cut(s) 592
Bsh1236I CGCG 2 cut(s) 364, 414
Bsh1285I CGRYCG 1 cut(s) 601
BshFI GGCC 7 cut(s) 324, 411, 448, 462, 485, 513, 600
BshNI GGYRCC 1 cut(s) 499
BsiEI CGRYCG 1 cut(s) 601
BsiSI CCGG 6 cut(s) 325, 463, 503, 514, 528, 601
BslFI GGGAC 2 cut(s) 519, 544
BslI CCNNNNNNNGG 4 cut(s) 455, 469, 509, 607
BsmAI GTCTC 4 cut(s) 134, 246, 293, 384
BsmBI CGTCTC 2 cut(s) 293, 384
BsmFI GGGAC 2 cut(s) 519, 544
BsnI GGCC 7 cut(s) 324, 411, 448, 462, 485, 513, 600
Bsp1286I GDGCHC 2 cut(s) 502, 564
Bsp143I GATC 3 cut(s) 220, 610, 630
BspACI CCGC 7 cut(s) 315, 412, 445, 558, 568, 578, 597
BspANI GGCC 7 cut(s) 324, 411, 448, 462, 485, 513, 600
BspCNI CTCAG 1 cut(s) 130
BspFNI CGCG 2 cut(s) 364, 414
BspLI GGNNCC 1 cut(s) 501
BspPI GGATC 1 cut(s) 618
BspT107I GGYRCC 1 cut(s) 499
BsrFI RCCGGY 2 cut(s) 324, 462
BsrI ACTGG 1 cut(s) 386
BssAI RCCGGY 2 cut(s) 324, 462
BssMI GATC 3 cut(s) 220, 610, 630
Bst2UI CCWGG 1 cut(s) 450
Bst6I CTCTTC 1 cut(s) 30
BstC8I GCNNGC 5 cut(s) 366, 464, 483, 546, 560
BstDEI CTNAG 1 cut(s) 138
BstFNI CGCG 2 cut(s) 364, 414
BstH2I RGCGCY 1 cut(s) 482
BstHHI GCGC 3 cut(s) 416, 481, 527
BstKTI GATC 3 cut(s) 223, 613, 633
BstMAI GTCTC 4 cut(s) 134, 246, 293, 384
BstMBI GATC 3 cut(s) 220, 610, 630
BstMCI CGRYCG 1 cut(s) 601
BstMWI GCNNNNNNNGC 5 cut(s) 321, 330, 365, 550, 559
BstNI CCWGG 1 cut(s) 450
BstNSI RCATGY 2 cut(s) 88, 311
BstSCI CCNGG 3 cut(s) 448, 502, 527
BstSLI GKGCMC 1 cut(s) 502
BstUI CGCG 2 cut(s) 364, 414
BstV1I GCAGC 3 cut(s) 317, 343, 355
BstV2I GAAGAC 1 cut(s) 161
BstX2I RGATCY 1 cut(s) 610
BstYI RGATCY 1 cut(s) 610
BstZI CGGCCG 1 cut(s) 598
BsuRI GGCC 7 cut(s) 324, 411, 448, 462, 485, 513, 600
BtgZI GCGATG 1 cut(s) 348
Cac8I GCNNGC 5 cut(s) 366, 464, 483, 546, 560
CfoI GCGC 3 cut(s) 416, 481, 527
Cfr10I RCCGGY 2 cut(s) 324, 462
CseI GACGC 1 cut(s) 401
Csp6I GTAC 1 cut(s) 268
CviAII CATG 5 cut(s) 71, 85, 236, 256, 308
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 1 cut(s) 138
DpnI GATC 3 cut(s) 222, 612, 632
DpnII GATC 3 cut(s) 220, 610, 630
EaeI YGGCCR 4 cut(s) 322, 483, 511, 598
EagI CGGCCG 1 cut(s) 598
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
EciI GGCGGA 1 cut(s) 593
EclXI CGGCCG 1 cut(s) 598
Eco24I GRGCYC 1 cut(s) 564
Eco47III AGCGCT 1 cut(s) 480
Eco52I CGGCCG 1 cut(s) 598
Eco57I CTGAAG 2 cut(s) 69, 371
EcoRII CCWGG 1 cut(s) 448
EcoT38I GRGCYC 1 cut(s) 564
Esp3I CGTCTC 2 cut(s) 293, 384
FaeI CATG 5 cut(s) 74, 88, 239, 259, 311
FaiI YATR 7 cut(s) 72, 86, 90, 237, 257, 309, 539
FaqI GGGAC 2 cut(s) 519, 544
FatI CATG 5 cut(s) 70, 84, 235, 255, 307
FauI CCCGC 2 cut(s) 308, 551
Fnu4HI GCNGC 6 cut(s) 331, 357, 369, 412, 446, 598
FriOI GRGCYC 1 cut(s) 564
Fsp4HI GCNGC 6 cut(s) 331, 357, 369, 412, 446, 598
FspBI CTAG 2 cut(s) 215, 634
GlaI GCGC 3 cut(s) 415, 480, 526
GluI GCNGC 6 cut(s) 331, 357, 369, 412, 446, 598
GsaI CCCAGC 2 cut(s) 375, 552
GsuI CTGGAG 1 cut(s) 635
HaeII RGCGCY 1 cut(s) 482
HaeIII GGCC 7 cut(s) 324, 411, 448, 462, 485, 513, 600
HapII CCGG 6 cut(s) 325, 463, 503, 514, 528, 601
HgaI GACGC 1 cut(s) 401
HhaI GCGC 3 cut(s) 416, 481, 527
Hin1II CATG 5 cut(s) 74, 88, 239, 259, 311
Hin6I GCGC 3 cut(s) 414, 479, 525
HinP1I GCGC 3 cut(s) 414, 479, 525
HinfI GANTC 2 cut(s) 239, 283
HpaII CCGG 6 cut(s) 325, 463, 503, 514, 528, 601
HphI GGTGA 1 cut(s) 464
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 2 cut(s) 32, 614
HpyAV CCTTC 3 cut(s) 346, 575, 601
HpyCH4V TGCA 4 cut(s) 84, 338, 359, 573
HpyF10VI GCNNNNNNNGC 5 cut(s) 321, 330, 365, 550, 559
HpyF3I CTNAG 1 cut(s) 138
Hsp92II CATG 5 cut(s) 74, 88, 239, 259, 311
HspAI GCGC 3 cut(s) 414, 479, 525
KroI GCCGGC 1 cut(s) 462
KroNI GCCGGC 1 cut(s) 464
Kzo9I GATC 3 cut(s) 220, 610, 630
LmnI GCTCC 1 cut(s) 385
Lsp1109I GCAGC 3 cut(s) 317, 343, 355
LweI GCATC 1 cut(s) 325
MaeI CTAG 2 cut(s) 215, 634
MaeIII GTNAC 2 cut(s) 100, 122
MalI GATC 3 cut(s) 222, 612, 632
MboI GATC 3 cut(s) 220, 610, 630
MboII GAAGA 6 cut(s) 20, 47, 74, 166, 284, 616
MfeI CAATTG 3 cut(s) 159, 180, 245
MflI RGATCY 1 cut(s) 610
MhlI GDGCHC 2 cut(s) 502, 564
MlsI TGGCCA 1 cut(s) 485
MluCI AATT 4 cut(s) 159, 180, 245, 260
MluNI TGGCCA 1 cut(s) 485
MmeI TCCRAC 1 cut(s) 357
Mox20I TGGCCA 1 cut(s) 485
MroNI GCCGGC 1 cut(s) 462
MscI TGGCCA 1 cut(s) 485
MseI TTAA 1 cut(s) 263
MslI CAYNNNNRTG 1 cut(s) 75
Msp20I TGGCCA 1 cut(s) 485
MspI CCGG 6 cut(s) 325, 463, 503, 514, 528, 601
MspR9I CCNGG 3 cut(s) 450, 504, 529
MunI CAATTG 3 cut(s) 159, 180, 245
MvaI CCWGG 1 cut(s) 450
MvnI CGCG 2 cut(s) 364, 414
MwoI GCNNNNNNNGC 5 cut(s) 321, 330, 365, 550, 559
NaeI GCCGGC 1 cut(s) 464
NciI CCSGG 2 cut(s) 504, 529
NdeII GATC 3 cut(s) 220, 610, 630
NgoMIV GCCGGC 1 cut(s) 462
NlaIII CATG 5 cut(s) 74, 88, 239, 259, 311
NlaIV GGNNCC 1 cut(s) 501
NspI RCATGY 2 cut(s) 88, 311
PciI ACATGT 1 cut(s) 307
PdiI GCCGGC 1 cut(s) 464
PfeI GAWTC 2 cut(s) 239, 283
PkrI GCNGC 6 cut(s) 332, 358, 370, 413, 447, 599
PscI ACATGT 1 cut(s) 307
Psp6I CCWGG 1 cut(s) 448
PspFI CCCAGC 2 cut(s) 371, 548
PspGI CCWGG 1 cut(s) 448
PspN4I GGNNCC 1 cut(s) 501
PsuI RGATCY 1 cut(s) 610
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
RseI CAYNNNNRTG 1 cut(s) 75
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 6 cut(s) 331, 357, 369, 412, 446, 598
Sau3AI GATC 3 cut(s) 220, 610, 630
ScrFI CCNGG 3 cut(s) 450, 504, 529
SduI GDGCHC 2 cut(s) 502, 564
SetI ASST 6 cut(s) 42, 100, 216, 370, 442, 494
SfaNI GCATC 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 75
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
Sse9I AATT 4 cut(s) 159, 180, 245, 260
SsiI CCGC 7 cut(s) 315, 412, 445, 558, 568, 578, 597
SspMI CTAG 2 cut(s) 215, 634
StyD4I CCNGG 3 cut(s) 448, 502, 527
TaqI TCGA 1 cut(s) 281
TasI AATT 4 cut(s) 159, 180, 245, 260
TauI GCSGC 3 cut(s) 414, 448, 600
TfiI GAWTC 2 cut(s) 239, 283
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TseI GCWGC 3 cut(s) 330, 356, 368
TspDTI ATGAA 3 cut(s) 27, 252, 272
TspGWI ACGGA 1 cut(s) 485
XceI RCATGY 2 cut(s) 88, 311
XspI CTAG 2 cut(s) 215, 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.