Rmu_sc0001992.1_g000012

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001992.1
OG0000136
Physical Location & Seq
Reverse (-)
55691 .. 57627
1937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001992.1_g000012.1.cds

Sequence Viewer

Length: 1278 bp
atgcacattgagaaaaattgtttggataatatactctggacattgctgggagttccgggaagaagtaaggataatttgaagtctcgccgtgatttagaagaatggggaattaggcagcctttacatcctcaacaacggggttctaataaagcatatttatgtcctgcatattttgatatgaataaggacaataaggatatctttctacgggttttaaagagagtaaaactttcagatggttatgcatctaacatatctcaacatgtgcccttaaaagaacatactatctcgggtcttaagagtcatgataaccatatattgatgcaacaattacttccaatagctgcacgaagagcactccccaagaatgttgttgaagcattgattgagttggctaatttttttaggcaactatgctccaaagtaaacaaaccatctgacttgaaagatattcaagaaagaattgcccttacactttgtcatcttgagaagatctttccaatgtcattctttgatattatggaacacttgcctatccacttagctgaagaagcgttgattgcggggcctgtacaattgaggtggatgtatcccatcgagaggtttttatttacattaaaagaatatgtctgtaatcgtgcacatcccgaggcctcaattgctaaaggatacttgatggaagaatgcatgacattttgctcgagatacttggatgaagtggaaacaaagtctaataggcctgatcgaaattatgatggtggtactgattttggtcgtcgtttgggagacaacaatcgtcaactgattgaggaaaggttctatggggtattaattgatgtgattcaaatccgctataccaatcacttaaagtttgtcttatttaagggtgattggattaataatcaaatgggcctaaaaaaagatgagtttaaattcacactggtgaattttaatcatttattatacaaagacaatgtaatagaagatgagccttttattttggcagaacaggcaaggcaggtttgttatgtgcaagacctgtcggatcccaattggcaggttgttcttcacatgacggttagagatttgtttgatatgtactcaaaggattcttctcgtcgtccaacaatagtgcctcaagttgagttgtatgcccgtcaacaattggatgaaactaaatatcagaatgatgaggaggttaattgggtgagggaaggagtggatagaacagaagtggatacaaatgacaatgacgttaaagttgaaatggaagaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

425

Amino Acids

49.98

Weight (kDa)

5.87

Isoelectric Point (pI)

53.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1009, 1048
AciI CCGC 2 cut(s) 563, 850
AclWI GGATC 2 cut(s) 1040, 1053
AcsI RAATTY 2 cut(s) 932, 946
AcuI CTGAAG 1 cut(s) 567
AfaI GTAC 3 cut(s) 573, 763, 1100
AfiI CCNNNNNNNGG 1 cut(s) 600
AflII CTTAAG 1 cut(s) 296
AflIII ACRYGT 1 cut(s) 262
AgsI TTSAA 6 cut(s) 79, 377, 445, 455, 845, 1265
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AleI CACNNNNGTG 1 cut(s) 941
AluBI AGCT 2 cut(s) 344, 545
AluI AGCT 2 cut(s) 344, 545
Alw21I GWGCWC 2 cut(s) 358, 643
Alw26I GTCTC 2 cut(s) 87, 780
Alw44I GTGCAC 1 cut(s) 639
AlwI GGATC 2 cut(s) 1040, 1053
Ama87I CYCGRG 3 cut(s) 289, 647, 700
AoxI GGCC 4 cut(s) 566, 651, 737, 910
ApaLI GTGCAC 1 cut(s) 639
ApeKI GCWGC 2 cut(s) 115, 344
ApoI RAATTY 2 cut(s) 932, 946
AseI ATTAAT 2 cut(s) 830, 897
AspS9I GGNCC 2 cut(s) 566, 910
AsuC2I CCSGG 1 cut(s) 57
AsuHPI GGTGA 3 cut(s) 899, 955, 1219
AvaI CYCGRG 3 cut(s) 289, 647, 700
BaeGI GKGCMC 2 cut(s) 270, 643
BamHI GGATCC 1 cut(s) 1045
Bbv12I GWGCWC 2 cut(s) 358, 643
BbvI GCAGC 2 cut(s) 127, 331
BccI CCATC 5 cut(s) 230, 442, 602, 670, 749
BceAI ACGGC 1 cut(s) 72
BciVI GTATCC 3 cut(s) 600, 662, 1231
BcnI CCSGG 1 cut(s) 57
BcoDI GTCTC 2 cut(s) 87, 780
BfrI CTTAAG 1 cut(s) 296
BfuAI ACCTGC 2 cut(s) 1009, 1048
BfuI GTATCC 3 cut(s) 600, 662, 1231
BglII AGATCT 1 cut(s) 492
BisI GCNGC 2 cut(s) 116, 345
BlsI GCNGC 2 cut(s) 117, 346
Bme1390I CCNGG 1 cut(s) 57
BmeT110I CYCGRG 3 cut(s) 289, 647, 700
BmgT120I GGNCC 2 cut(s) 566, 910
BmiI GGNNCC 2 cut(s) 567, 1047
BmrFI CCNGG 1 cut(s) 57
BmsI GCATC 2 cut(s) 254, 312
BpuEI CTTGAG 2 cut(s) 506, 1122
BpuMI CCSGG 1 cut(s) 57
BsaBI GATNNNNATC 1 cut(s) 845
BsaJI CCNNGG 1 cut(s) 648
Bsc4I CCNNNNNNNGG 1 cut(s) 600
Bse1I ACTGG 1 cut(s) 945
Bse3DI GCAATG 1 cut(s) 41
Bse8I GATNNNNATC 1 cut(s) 845
BseDI CCNNGG 1 cut(s) 648
BseGI GGATG 5 cut(s) 124, 591, 643, 718, 1174
BseJI GATNNNNATC 1 cut(s) 845
BseLI CCNNNNNNNGG 1 cut(s) 600
BseMI GCAATG 1 cut(s) 41
BseNI ACTGG 1 cut(s) 945
BseRI GAGGAG 1 cut(s) 1208
BseSI GKGCMC 2 cut(s) 270, 643
BseXI GCAGC 2 cut(s) 127, 331
BseYI CCCAGC 1 cut(s) 46
BsgI GTGCAG 1 cut(s) 330
BshFI GGCC 4 cut(s) 568, 653, 739, 912
BsiHKAI GWGCWC 2 cut(s) 358, 643
BsiHKCI CYCGRG 3 cut(s) 289, 647, 700
BsiSI CCGG 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 600
BsmAI GTCTC 2 cut(s) 87, 780
BsmI GAATGC 1 cut(s) 689
BsnI GGCC 4 cut(s) 568, 653, 739, 912
BsoBI CYCGRG 3 cut(s) 289, 647, 700
Bsp1286I GDGCHC 3 cut(s) 270, 358, 643
Bsp1407I TGTACA 1 cut(s) 571
Bsp143I GATC 3 cut(s) 492, 742, 1045
BspACI CCGC 2 cut(s) 563, 850
BspANI GGCC 4 cut(s) 568, 653, 739, 912
BspHI TCATGA 1 cut(s) 304
BspLI GGNNCC 2 cut(s) 567, 1047
BspMI ACCTGC 2 cut(s) 1009, 1048
BspPI GGATC 2 cut(s) 1040, 1053
BspQI GCTCTTC 1 cut(s) 346
BspTI CTTAAG 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 41
BsrGI TGTACA 1 cut(s) 571
BsrI ACTGG 1 cut(s) 945
BssECI CCNNGG 1 cut(s) 648
BssMI GATC 3 cut(s) 492, 742, 1045
Bst4CI ACNGT 1 cut(s) 1078
Bst6I CTCTTC 1 cut(s) 346
BstAFI CTTAAG 1 cut(s) 296
BstAUI TGTACA 1 cut(s) 571
BstDEI CTNAG 1 cut(s) 541
BstF5I GGATG 5 cut(s) 124, 591, 643, 718, 1174
BstKTI GATC 3 cut(s) 495, 745, 1048
BstMAI GTCTC 2 cut(s) 87, 780
BstMBI GATC 3 cut(s) 492, 742, 1045
BstMWI GCNNNNNNNGC 5 cut(s) 353, 551, 560, 659, 1010
BstNSI RCATGY 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 55
BstSLI GKGCMC 2 cut(s) 270, 643
BstV1I GCAGC 2 cut(s) 127, 331
BstX2I RGATCY 2 cut(s) 492, 1045
BstYI RGATCY 2 cut(s) 492, 1045
BsuI GTATCC 3 cut(s) 600, 662, 1231
BsuRI GGCC 4 cut(s) 568, 653, 739, 912
BtsCI GGATG 5 cut(s) 124, 591, 643, 718, 1174
BtsIMutI CAGTG 1 cut(s) 938
BveI ACCTGC 2 cut(s) 1009, 1048
CciI TCATGA 1 cut(s) 304
Cfr13I GGNCC 2 cut(s) 566, 910
Csp6I GTAC 3 cut(s) 572, 762, 1099
CspCI CAANNNNNGTGG 2 cut(s) 563, 598
CviAII CATG 4 cut(s) 263, 305, 688, 1072
CviJI RGCY 9 cut(s) 118, 344, 395, 545, 568, 653, 739, 912, 991
CviKI_1 RGCY 9 cut(s) 118, 344, 395, 545, 568, 653, 739, 912, 991
CviQI GTAC 3 cut(s) 572, 762, 1099
DdeI CTNAG 1 cut(s) 541
DpnI GATC 3 cut(s) 494, 744, 1047
DpnII GATC 3 cut(s) 492, 742, 1045
DraI TTTAAA 2 cut(s) 216, 931
Eam1104I CTCTTC 1 cut(s) 346
EarI CTCTTC 1 cut(s) 346
Eco147I AGGCCT 2 cut(s) 653, 739
Eco32I GATATC 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 567
Eco88I CYCGRG 3 cut(s) 289, 647, 700
EcoO109I RGGNCCY 1 cut(s) 566
EcoRV GATATC 1 cut(s) 199
EcoT22I ATGCAT 2 cut(s) 247, 689
FaeI CATG 4 cut(s) 266, 308, 691, 1075
FalI AAGNNNNNCTT 4 cut(s) 185, 217, 860, 892
FatI CATG 4 cut(s) 262, 304, 687, 1071
FauI CCCGC 1 cut(s) 556
Fnu4HI GCNGC 2 cut(s) 116, 345
FokI GGATG 5 cut(s) 111, 598, 630, 725, 1181
Fsp4HI GCNGC 2 cut(s) 116, 345
GluI GCNGC 2 cut(s) 116, 345
GsaI CCCAGC 1 cut(s) 50
HaeIII GGCC 4 cut(s) 568, 653, 739, 912
HapII CCGG 1 cut(s) 56
Hin1II CATG 4 cut(s) 266, 308, 691, 1075
HincII GTYRAC 2 cut(s) 800, 1160
HindII GTYRAC 2 cut(s) 800, 1160
HinfI GANTC 3 cut(s) 301, 841, 1109
HpaII CCGG 1 cut(s) 56
HphI GGTGA 3 cut(s) 899, 955, 1219
Hpy166II GTNNAC 4 cut(s) 427, 641, 800, 1160
Hpy188I TCNGA 4 cut(s) 235, 439, 1045, 1185
Hpy188III TCNNGA 7 cut(s) 37, 305, 455, 485, 598, 647, 702
Hpy8I GTNNAC 4 cut(s) 427, 641, 800, 1160
Hpy99I CGWCG 2 cut(s) 780, 1122
HpyAV CCTTC 1 cut(s) 1208
HpyCH4III ACNGT 1 cut(s) 1078
HpyCH4IV ACGT 1 cut(s) 1254
HpyCH4V TGCA 8 cut(s) 4, 167, 245, 325, 347, 641, 687, 1033
HpyF10VI GCNNNNNNNGC 5 cut(s) 353, 551, 560, 659, 1010
HpyF3I CTNAG 1 cut(s) 541
HpySE526I ACGT 1 cut(s) 1254
Hsp92II CATG 4 cut(s) 266, 308, 691, 1075
Kzo9I GATC 3 cut(s) 492, 742, 1045
LguI GCTCTTC 1 cut(s) 346
LmnI GCTCC 1 cut(s) 422
Lsp1109I GCAGC 2 cut(s) 127, 331
LweI GCATC 2 cut(s) 254, 312
MaeII ACGT 1 cut(s) 1254
MalI GATC 3 cut(s) 494, 744, 1047
MboI GATC 3 cut(s) 492, 742, 1045
MboII GAAGA 9 cut(s) 72, 110, 363, 502, 560, 692, 995, 1058, 1104
MfeI CAATTG 4 cut(s) 575, 657, 1051, 1163
MflI RGATCY 2 cut(s) 492, 1045
MhlI GDGCHC 3 cut(s) 270, 358, 643
MlyI GAGTC 1 cut(s) 310
MmeI TCCRAC 2 cut(s) 1023, 1148
Mph1103I ATGCAT 2 cut(s) 247, 689
MslI CAYNNNNRTG 2 cut(s) 157, 941
MspCI CTTAAG 1 cut(s) 296
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 57
MunI CAATTG 4 cut(s) 575, 657, 1051, 1163
Mva1269I GAATGC 1 cut(s) 689
MwoI GCNNNNNNNGC 5 cut(s) 353, 551, 560, 659, 1010
NciI CCSGG 1 cut(s) 57
NdeII GATC 3 cut(s) 492, 742, 1045
NlaIII CATG 4 cut(s) 266, 308, 691, 1075
NlaIV GGNNCC 2 cut(s) 567, 1047
NsiI ATGCAT 2 cut(s) 247, 689
NspI RCATGY 1 cut(s) 266
OliI CACNNNNGTG 1 cut(s) 941
PaeR7I CTCGAG 1 cut(s) 700
PagI TCATGA 1 cut(s) 304
PceI AGGCCT 2 cut(s) 653, 739
PciI ACATGT 1 cut(s) 262
PciSI GCTCTTC 1 cut(s) 346
PctI GAATGC 1 cut(s) 689
PfeI GAWTC 2 cut(s) 841, 1109
PfoI TCCNGGA 1 cut(s) 55
PkrI GCNGC 2 cut(s) 117, 346
PleI GAGTC 1 cut(s) 309
PpsI GAGTC 1 cut(s) 309
PscI ACATGT 1 cut(s) 262
PshBI ATTAAT 2 cut(s) 830, 897
PspFI CCCAGC 1 cut(s) 46
PspN4I GGNNCC 2 cut(s) 567, 1047
PspPI GGNCC 2 cut(s) 566, 910
PsuI RGATCY 2 cut(s) 492, 1045
RsaI GTAC 3 cut(s) 573, 763, 1100
RsaNI GTAC 3 cut(s) 572, 762, 1099
RseI CAYNNNNRTG 2 cut(s) 157, 941
SapI GCTCTTC 1 cut(s) 346
SatI GCNGC 2 cut(s) 116, 345
Sau3AI GATC 3 cut(s) 492, 742, 1045
Sau96I GGNCC 2 cut(s) 566, 910
SchI GAGTC 1 cut(s) 310
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 3 cut(s) 270, 358, 643
SfaNI GCATC 2 cut(s) 254, 312
Sfr274I CTCGAG 1 cut(s) 700
SlaI CTCGAG 1 cut(s) 700
SmiMI CAYNNNNRTG 2 cut(s) 157, 941
SmlI CTYRAG 4 cut(s) 296, 485, 700, 1137
SmoI CTYRAG 4 cut(s) 296, 485, 700, 1137
SseBI AGGCCT 2 cut(s) 653, 739
SsiI CCGC 2 cut(s) 563, 850
StuI AGGCCT 2 cut(s) 653, 739
StyD4I CCNGG 1 cut(s) 55
TaaI ACNGT 1 cut(s) 1078
TaiI ACGT 1 cut(s) 1257
TaqI TCGA 3 cut(s) 597, 701, 745
TatI WGTACW 2 cut(s) 571, 1098
TfiI GAWTC 2 cut(s) 841, 1109
TscAI CASTG 1 cut(s) 945
TseI GCWGC 2 cut(s) 115, 344
TspDTI ATGAA 3 cut(s) 194, 729, 1185
TspRI CASTG 1 cut(s) 945
Vha464I CTTAAG 1 cut(s) 296
VneI GTGCAC 1 cut(s) 639
VspI ATTAAT 2 cut(s) 830, 897
XapI RAATTY 2 cut(s) 932, 946
XceI RCATGY 1 cut(s) 266
XhoI CTCGAG 1 cut(s) 700
Zsp2I ATGCAT 2 cut(s) 247, 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.