Rh4DG147900

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000136
Physical Location & Seq
Forward (+)
29591344 .. 29603170
11827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG147900.1

Sequence Viewer

Length: 705 bp
ATGTCTTTTGTTTACCATAATTATGGATCAGGTCAAGTTACTCAAACAGCTAAGAAAGGTAGAGGTGCTGCTTGTGGTATGCCTGAGTGGGGAACTGGAAAACTAATTCATATTGAGTTTGATGCTAACTGGATGCCTATTAGTGAAAATGGGAAAGGATTTAGTTCACAACTTGGAATTTTGGCGCGAGATGGAGAGAAGGTTCCTCTAACATATACTTCATGGAATGCCATGCCAGACGATATTTTGGATGCCATTTGGAAAGATGTCAAGGATAATACGGATGTTCCGGATGAGTATAAACAACATTGCTTAAAGGTTGTTGGTAGTAGATGGAGGGACTGGAAGTGCCGAGTCAAGACAAAATGGTATGATAAATATGAAACGGATGAGCAGCGATTAGCATTCATTCCTAATCAGGTTGTTGGAGAGCAATGGAAGATATTAGTAAAATATTGGGGTCTTCCGCAAATAAAGGAAATGTGTGAGACAAATAAATCTAGCCGTGCACAAGGAGGAGGTGTCCCTCATAGGACTGGTCGAAAATCTTTTGCTAGACTACGAAAAGAGATGATGGAGAATGGAGAGAAAACAGATCGTGTCAGCATGTTTGTCAAAACAAGAGCAATGAAAACAAAGGATGATAATGGTCAACCAATTGAAATTCATGATGAGGAGGCTACTGCTGTTATTCCTCAAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23 Transposase_24

Protein Analysis

234

Amino Acids

26.81

Weight (kDa)

8.75

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 144 - 214 1.6e-16 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 187
AccIII TCCGGA 1 cut(s) 289
AciI CCGC 1 cut(s) 467
AclWI GGATC 1 cut(s) 34
AcsI RAATTY 2 cut(s) 177, 663
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 1 cut(s) 662
AloI GAACNNNNNNTCC 2 cut(s) 186, 218
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Alw21I GWGCWC 1 cut(s) 511
Alw26I GTCTC 1 cut(s) 482
Alw44I GTGCAC 1 cut(s) 507
AlwI GGATC 1 cut(s) 34
Aor13HI TCCGGA 1 cut(s) 289
ApaLI GTGCAC 1 cut(s) 507
ApeKI GCWGC 2 cut(s) 68, 394
ApoI RAATTY 2 cut(s) 177, 663
AspLEI GCGC 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 511
BbsI GAAGAC 1 cut(s) 455
Bbv12I GWGCWC 1 cut(s) 511
BbvI GCAGC 2 cut(s) 55, 406
BccI CCATC 3 cut(s) 185, 327, 568
BceAI ACGGC 1 cut(s) 489
BcoDI GTCTC 1 cut(s) 482
BfaI CTAG 2 cut(s) 501, 555
BisI GCNGC 2 cut(s) 69, 395
BlsI GCNGC 2 cut(s) 70, 396
BmiI GGNNCC 1 cut(s) 204
BmsI GCATC 3 cut(s) 112, 123, 241
BpiI GAAGAC 1 cut(s) 455
BpuEI CTTGAG 1 cut(s) 681
BsaWI WCCGGW 1 cut(s) 289
BsaXI ACNNNNNCTCC 4 cut(s) 186, 216, 507, 537
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse1I ACTGG 4 cut(s) 100, 134, 347, 541
Bse3DI GCAATG 3 cut(s) 307, 440, 633
BseAI TCCGGA 1 cut(s) 289
BseGI GGATG 6 cut(s) 138, 256, 289, 298, 394, 646
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMI GCAATG 3 cut(s) 307, 440, 633
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 4 cut(s) 100, 134, 347, 541
BseRI GAGGAG 2 cut(s) 531, 689
BseSI GKGCMC 1 cut(s) 511
BseXI GCAGC 2 cut(s) 55, 406
Bsh1236I CGCG 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 511
BsiSI CCGG 1 cut(s) 290
BslFI GGGAC 2 cut(s) 353, 509
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 482
BsmFI GGGAC 2 cut(s) 353, 509
BsmI GAATGC 2 cut(s) 232, 404
Bsp1286I GDGCHC 1 cut(s) 511
Bsp13I TCCGGA 1 cut(s) 289
Bsp143I GATC 2 cut(s) 26, 595
BspACI CCGC 1 cut(s) 467
BspCNI CTCAG 1 cut(s) 76
BspEI TCCGGA 1 cut(s) 289
BspFNI CGCG 1 cut(s) 187
BspHI TCATGA 1 cut(s) 667
BspLI GGNNCC 1 cut(s) 204
BspPI GGATC 1 cut(s) 34
BsrDI GCAATG 3 cut(s) 307, 440, 633
BsrI ACTGG 4 cut(s) 100, 134, 347, 541
BssMI GATC 2 cut(s) 26, 595
BstDEI CTNAG 2 cut(s) 51, 84
BstF5I GGATG 6 cut(s) 138, 256, 289, 298, 394, 646
BstFNI CGCG 1 cut(s) 187
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 2 cut(s) 29, 598
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 2 cut(s) 26, 595
BstNSI RCATGY 1 cut(s) 610
BstSLI GKGCMC 1 cut(s) 511
BstUI CGCG 1 cut(s) 187
BstV1I GCAGC 2 cut(s) 55, 406
BstV2I GAAGAC 1 cut(s) 455
BstXI CCANNNNNNTGG 1 cut(s) 23
BtsCI GGATG 6 cut(s) 138, 256, 289, 298, 394, 646
CciI TCATGA 1 cut(s) 667
CfoI GCGC 1 cut(s) 187
CviAII CATG 4 cut(s) 222, 232, 607, 668
CviJI RGCY 3 cut(s) 50, 504, 680
CviKI_1 RGCY 3 cut(s) 50, 504, 680
DdeI CTNAG 2 cut(s) 51, 84
DpnI GATC 2 cut(s) 28, 597
DpnII GATC 2 cut(s) 26, 595
FaeI CATG 4 cut(s) 225, 235, 610, 671
FaqI GGGAC 2 cut(s) 353, 509
FatI CATG 4 cut(s) 221, 231, 606, 667
Fnu4HI GCNGC 2 cut(s) 69, 395
FokI GGATG 6 cut(s) 145, 263, 296, 305, 401, 653
Fsp4HI GCNGC 2 cut(s) 69, 395
FspBI CTAG 2 cut(s) 501, 555
GlaI GCGC 1 cut(s) 186
GluI GCNGC 2 cut(s) 69, 395
HapII CCGG 1 cut(s) 290
HhaI GCGC 1 cut(s) 187
Hin1II CATG 4 cut(s) 225, 235, 610, 671
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HincII GTYRAC 1 cut(s) 653
HindII GTYRAC 1 cut(s) 653
HinfI GANTC 1 cut(s) 354
HpaII CCGG 1 cut(s) 290
Hpy166II GTNNAC 4 cut(s) 13, 167, 509, 653
Hpy188III TCNNGA 3 cut(s) 290, 358, 668
Hpy8I GTNNAC 4 cut(s) 13, 167, 509, 653
HpyAV CCTTC 1 cut(s) 193
HpyCH4V TGCA 1 cut(s) 509
HpyF3I CTNAG 2 cut(s) 51, 84
Hsp92II CATG 4 cut(s) 225, 235, 610, 671
HspAI GCGC 1 cut(s) 185
Kpn2I TCCGGA 1 cut(s) 289
Kzo9I GATC 2 cut(s) 26, 595
LpnPI CCDG 9 cut(s) 15, 81, 96, 115, 249, 303, 328, 404, 522
Lsp1109I GCAGC 2 cut(s) 55, 406
LweI GCATC 3 cut(s) 112, 123, 241
MaeI CTAG 2 cut(s) 501, 555
MaeIII GTNAC 1 cut(s) 37
MalI GATC 2 cut(s) 28, 597
MboI GATC 2 cut(s) 26, 595
MboII GAAGA 2 cut(s) 451, 455
MfeI CAATTG 1 cut(s) 657
MhlI GDGCHC 1 cut(s) 511
MluCI AATT 5 cut(s) 19, 105, 177, 657, 663
MlyI GAGTC 1 cut(s) 363
MmeI TCCRAC 1 cut(s) 406
MnlI CCTC 9 cut(s) 56, 216, 330, 509, 512, 537, 667, 670, 705
MroI TCCGGA 1 cut(s) 289
MseI TTAA 1 cut(s) 314
MslI CAYNNNNRTG 1 cut(s) 21
MspI CCGG 1 cut(s) 290
MunI CAATTG 1 cut(s) 657
Mva1269I GAATGC 2 cut(s) 232, 404
MvnI CGCG 1 cut(s) 187
NdeII GATC 2 cut(s) 26, 595
NlaIII CATG 4 cut(s) 225, 235, 610, 671
NlaIV GGNNCC 1 cut(s) 204
NmeAIII GCCGAG 1 cut(s) 377
NspI RCATGY 1 cut(s) 610
PagI TCATGA 1 cut(s) 667
PctI GAATGC 2 cut(s) 232, 404
PkrI GCNGC 2 cut(s) 70, 396
PleI GAGTC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 362
PspN4I GGNNCC 1 cut(s) 204
RseI CAYNNNNRTG 1 cut(s) 21
SaqAI TTAA 1 cut(s) 314
SatI GCNGC 2 cut(s) 69, 395
Sau3AI GATC 2 cut(s) 26, 595
SchI GAGTC 1 cut(s) 363
SduI GDGCHC 1 cut(s) 511
SetI ASST 8 cut(s) 34, 52, 61, 67, 204, 321, 423, 523
SfaNI GCATC 3 cut(s) 112, 123, 241
SmiMI CAYNNNNRTG 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 696
SmoI CTYRAG 1 cut(s) 696
Sse9I AATT 5 cut(s) 19, 105, 177, 657, 663
SsiI CCGC 1 cut(s) 467
SspI AATATT 1 cut(s) 455
SspMI CTAG 2 cut(s) 501, 555
TaqI TCGA 1 cut(s) 541
TasI AATT 5 cut(s) 19, 105, 177, 657, 663
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TseI GCWGC 2 cut(s) 68, 394
TspDTI ATGAA 6 cut(s) 98, 210, 396, 397, 644, 656
TspGWI ACGGA 2 cut(s) 296, 401
VneI GTGCAC 1 cut(s) 507
XapI RAATTY 2 cut(s) 177, 663
XceI RCATGY 1 cut(s) 610
XspI CTAG 2 cut(s) 501, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.