Rw4G006020

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000136
Physical Location & Seq
Forward (+)
12184904 .. 12189181
4278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G006020.1

Sequence Viewer

Length: 1071 bp
ATGAAGAAAAGAAAGGTTGGGAGACCACGCACTATGTCTGAGTTTTTGACTTCAAGTGGATCTAATTCTTCAAACAGCAATGGTTCCTCATCGCAGCCATCCTATAGGTCTACTAATCCACCTCCTACACCCCCACTGCCTCCACCCCCACCGCCTCCTTCTGCACCTTCTCCTCCAATATTACCTCTTCCATCTCTAGAAGCTGAAGTACAATCTGCTACCTTTATTACTAGAGGTCACAATAAAGGTATCCCAGAGTGGAATACTGGAGTTAAAATCAAGATTATGTTTGATTCTAACTTCCAACCTGTTGGAGAAAGAGCTACACAGCTAAAGTCACAATTGGGGCAAATTGTACGTGATGGCCAGAGGATTCCACTAACATTACTTGACTGGAAGGCTGTTGGACCTGATGTGAAAGAGGGAATATGGAAAGAGGTTCAGCTTATAGCAACACGAAATTCTATCAATCGGGAGCAGCGTGGACCGGTTCATAGTACTGGTCGAAAACATTTCTCCCAGCTGCGATATGAGATGGAACAAAGTGGAGAACAAACTGAAAAGATGAGTGTGTGGAAAAAAGCACGCAATCAATCAAATGCAGATGTTGCCCAAGTCATTGAGGAATATGACAAGAAATTGCTAATGGAACCTGAGGACCAGCGAGAACTTAGGGCTGTAAAAGATCGAATATTCCATGAATTGCTTGGGGAAGATGGTCATGGTTATTGTCGTACCTATGGTTCTACTGTGCCTCGCAGTTTGGTGTATCCACAGGAATCAATGCCTTCTCATAACACCAATGACCTCATACAGAAAATAACTGAAGAGGTTACAGAGAAAGTGAAAGAGGCTTTCACAAGGAAGATGCAGGACCAATTAGATATGCTTCAAGCTCGGATTAACTTTTTAGAGAGCAATGAGGGGCAAAACAGAAATCCATGTGGACAGGTTCAAGATGCAACTAGTGGCCATGAAGTTAGAAGGGAGTCCATAGGAGAAGGAGTTCATCCACATTCAACTAGTAATCAAGAAATTGATCATGCTCCAGTACTCACCAAGCCCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

356

Amino Acids

39.99

Weight (kDa)

8.39

Isoelectric Point (pI)

51.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 146 - 251 4.7e-10 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 110
AciI CCGC 1 cut(s) 152
AclWI GGATC 1 cut(s) 67
AcoI YGGCCR 2 cut(s) 364, 970
AcsI RAATTY 1 cut(s) 460
AcuI CTGAAG 2 cut(s) 225, 846
AfaI GTAC 5 cut(s) 210, 357, 499, 736, 1053
AgeI ACCGGT 1 cut(s) 487
AgsI TTSAA 5 cut(s) 54, 72, 893, 956, 1020
AhlI ACTAGT 2 cut(s) 965, 1022
AloI GAACNNNNNNTCC 2 cut(s) 990, 1022
AluBI AGCT 6 cut(s) 203, 323, 331, 445, 523, 896
AluI AGCT 6 cut(s) 203, 323, 331, 445, 523, 896
Alw26I GTCTC 1 cut(s) 16
AlwI GGATC 1 cut(s) 67
AoxI GGCC 2 cut(s) 364, 970
ApeKI GCWGC 3 cut(s) 94, 478, 523
ApoI RAATTY 1 cut(s) 460
AsiGI ACCGGT 1 cut(s) 487
Asp700I GAANNNNTTC 1 cut(s) 1005
AspS9I GGNCC 4 cut(s) 407, 485, 658, 874
AsuHPI GGTGA 1 cut(s) 1048
AvaII GGWCC 4 cut(s) 407, 485, 658, 874
AxyI CCTNAGG 1 cut(s) 654
BalI TGGCCA 2 cut(s) 366, 972
BarI GAAGNNNNNNTAC 2 cut(s) 192, 224
BbvI GCAGC 3 cut(s) 106, 490, 510
BccI CCATC 5 cut(s) 106, 199, 356, 529, 710
BciVI GTATCC 2 cut(s) 260, 780
BclI TGATCA 1 cut(s) 1039
BcoDI GTCTC 1 cut(s) 16
BcuI ACTAGT 2 cut(s) 965, 1022
BfaI CTAG 5 cut(s) 197, 231, 966, 1023, 1069
BfmI CTRYAG 1 cut(s) 103
BfuI GTATCC 2 cut(s) 260, 780
BisI GCNGC 3 cut(s) 95, 479, 524
BlsI GCNGC 3 cut(s) 96, 480, 525
BmcAI AGTACT 2 cut(s) 499, 1053
Bme18I GGWCC 4 cut(s) 407, 485, 658, 874
BmgT120I GGNCC 4 cut(s) 407, 485, 658, 874
BmiI GGNNCC 2 cut(s) 85, 651
BmsI GCATC 2 cut(s) 858, 949
BpmI CTGGAG 2 cut(s) 288, 1032
BsaAI YACGTR 1 cut(s) 359
BsaI GGTCTC 1 cut(s) 16
BsaWI WCCGGW 1 cut(s) 487
BsaXI ACNNNNNCTCC 2 cut(s) 990, 1020
Bse118I RCCGGY 1 cut(s) 487
Bse1I ACTGG 4 cut(s) 271, 398, 505, 1049
Bse21I CCTNAGG 1 cut(s) 654
Bse3DI GCAATG 2 cut(s) 85, 925
BseGI GGATG 2 cut(s) 98, 1009
BseMI GCAATG 2 cut(s) 85, 925
BseMII CTCAG 2 cut(s) 30, 645
BseNI ACTGG 4 cut(s) 271, 398, 505, 1049
BseRI GAGGAG 1 cut(s) 162
BseXI GCAGC 3 cut(s) 106, 490, 510
BseYI CCCAGC 1 cut(s) 519
BsgI GTGCAG 1 cut(s) 147
BshFI GGCC 2 cut(s) 366, 972
BshTI ACCGGT 1 cut(s) 487
BsiSI CCGG 1 cut(s) 488
BsmAI GTCTC 1 cut(s) 16
BsnI GGCC 2 cut(s) 366, 972
Bso31I GGTCTC 1 cut(s) 16
Bsp143I GATC 3 cut(s) 59, 685, 1039
BspACI CCGC 1 cut(s) 152
BspANI GGCC 2 cut(s) 366, 972
BspCNI CTCAG 2 cut(s) 31, 646
BspLI GGNNCC 2 cut(s) 85, 651
BspPI GGATC 1 cut(s) 67
BspTNI GGTCTC 1 cut(s) 16
BsrDI GCAATG 2 cut(s) 85, 925
BsrFI RCCGGY 1 cut(s) 487
BsrI ACTGG 4 cut(s) 271, 398, 505, 1049
BssAI RCCGGY 1 cut(s) 487
BssMI GATC 3 cut(s) 59, 685, 1039
Bst4CI ACNGT 1 cut(s) 751
Bst6I CTCTTC 2 cut(s) 192, 822
BstAPI GCANNNNNTGC 1 cut(s) 608
BstBAI YACGTR 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 586
BstDEI CTNAG 3 cut(s) 39, 654, 671
BstF5I GGATG 2 cut(s) 98, 1009
BstKTI GATC 3 cut(s) 62, 688, 1042
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 3 cut(s) 59, 685, 1039
BstMWI GCNNNNNNNGC 1 cut(s) 608
BstSFI CTRYAG 1 cut(s) 103
BstV1I GCAGC 3 cut(s) 106, 490, 510
BstX2I RGATCY 1 cut(s) 59
BstXI CCANNNNNNTGG 1 cut(s) 311
BstYI RGATCY 1 cut(s) 59
Bsu36I CCTNAGG 1 cut(s) 654
BsuI GTATCC 2 cut(s) 260, 780
BsuRI GGCC 2 cut(s) 366, 972
BtgZI GCGATG 1 cut(s) 75
BtsCI GGATG 2 cut(s) 98, 1009
BtsI GCAGTG 1 cut(s) 134
BtsIMutI CAGTG 1 cut(s) 134
Cac8I GCNNGC 1 cut(s) 586
Cfr10I RCCGGY 1 cut(s) 487
Cfr13I GGNCC 4 cut(s) 407, 485, 658, 874
Csp6I GTAC 5 cut(s) 209, 356, 498, 735, 1052
CspAI ACCGGT 1 cut(s) 487
CviAII CATG 5 cut(s) 698, 722, 942, 974, 1043
CviQI GTAC 5 cut(s) 209, 356, 498, 735, 1052
DdeI CTNAG 3 cut(s) 39, 654, 671
DpnI GATC 3 cut(s) 61, 687, 1041
DpnII GATC 3 cut(s) 59, 685, 1039
EaeI YGGCCR 2 cut(s) 364, 970
Eam1104I CTCTTC 2 cut(s) 192, 822
EarI CTCTTC 2 cut(s) 192, 822
Eco31I GGTCTC 1 cut(s) 16
Eco47I GGWCC 4 cut(s) 407, 485, 658, 874
Eco57I CTGAAG 2 cut(s) 225, 846
Eco81I CCTNAGG 1 cut(s) 654
FaeI CATG 5 cut(s) 701, 725, 945, 977, 1046
FatI CATG 5 cut(s) 697, 721, 941, 973, 1042
FbaI TGATCA 1 cut(s) 1039
FblI GTMKAC 1 cut(s) 110
Fnu4HI GCNGC 3 cut(s) 95, 479, 524
FokI GGATG 2 cut(s) 85, 996
Fsp4HI GCNGC 3 cut(s) 95, 479, 524
FspBI CTAG 5 cut(s) 197, 231, 966, 1023, 1069
GluI GCNGC 3 cut(s) 95, 479, 524
GsaI CCCAGC 1 cut(s) 523
GsuI CTGGAG 2 cut(s) 288, 1032
HaeIII GGCC 2 cut(s) 366, 972
HapII CCGG 1 cut(s) 488
Hin1II CATG 5 cut(s) 701, 725, 945, 977, 1046
HinfI GANTC 4 cut(s) 293, 373, 779, 989
HpaII CCGG 1 cut(s) 488
HphI GGTGA 1 cut(s) 1048
Hpy166II GTNNAC 3 cut(s) 111, 485, 947
Hpy188I TCNGA 2 cut(s) 40, 900
Hpy188III TCNNGA 5 cut(s) 197, 280, 473, 956, 1031
Hpy8I GTNNAC 3 cut(s) 111, 485, 947
HpyAV CCTTC 6 cut(s) 168, 177, 391, 798, 978, 995
HpyCH4III ACNGT 1 cut(s) 751
HpyCH4IV ACGT 1 cut(s) 358
HpyCH4V TGCA 4 cut(s) 164, 602, 871, 962
HpyF10VI GCNNNNNNNGC 1 cut(s) 608
HpyF3I CTNAG 3 cut(s) 39, 654, 671
HpySE526I ACGT 1 cut(s) 358
Hsp92II CATG 5 cut(s) 701, 725, 945, 977, 1046
Ksp22I TGATCA 1 cut(s) 1039
Kzo9I GATC 3 cut(s) 59, 685, 1039
LmnI GCTCC 2 cut(s) 475, 1051
Lsp1109I GCAGC 3 cut(s) 106, 490, 510
LweI GCATC 2 cut(s) 858, 949
MaeI CTAG 5 cut(s) 197, 231, 966, 1023, 1069
MaeII ACGT 1 cut(s) 358
MaeIII GTNAC 3 cut(s) 236, 336, 832
MalI GATC 3 cut(s) 61, 687, 1041
MboI GATC 3 cut(s) 59, 685, 1039
MboII GAAGA 6 cut(s) 16, 60, 179, 725, 839, 877
MfeI CAATTG 1 cut(s) 341
MflI RGATCY 1 cut(s) 59
MlsI TGGCCA 2 cut(s) 366, 972
MluCI AATT 8 cut(s) 64, 341, 351, 460, 638, 701, 878, 1035
MluNI TGGCCA 2 cut(s) 366, 972
MlyI GAGTC 1 cut(s) 998
MmeI TCCRAC 3 cut(s) 292, 328, 385
Mox20I TGGCCA 2 cut(s) 366, 972
MroXI GAANNNNTTC 1 cut(s) 1005
MscI TGGCCA 2 cut(s) 366, 972
MseI TTAA 2 cut(s) 273, 903
Msp20I TGGCCA 2 cut(s) 366, 972
MspA1I CMGCKG 1 cut(s) 523
MspI CCGG 1 cut(s) 488
MunI CAATTG 1 cut(s) 341
MwoI GCNNNNNNNGC 1 cut(s) 608
NdeII GATC 3 cut(s) 59, 685, 1039
NlaIII CATG 5 cut(s) 701, 725, 945, 977, 1046
NlaIV GGNNCC 2 cut(s) 85, 651
NmuCI GTSAC 2 cut(s) 236, 336
PcsI WCGNNNNNNNCGW 1 cut(s) 478
PdmI GAANNNNTTC 1 cut(s) 1005
PfeI GAWTC 3 cut(s) 293, 373, 779
PinAI ACCGGT 1 cut(s) 487
PkrI GCNGC 3 cut(s) 96, 480, 525
PleI GAGTC 1 cut(s) 997
PpsI GAGTC 1 cut(s) 997
Ppu21I YACGTR 1 cut(s) 359
PspFI CCCAGC 1 cut(s) 519
PspN4I GGNNCC 2 cut(s) 85, 651
PspPI GGNCC 4 cut(s) 407, 485, 658, 874
PsrI GAACNNNNNNTAC 2 cut(s) 727, 759
PsuI RGATCY 1 cut(s) 59
PvuII CAGCTG 1 cut(s) 523
RsaI GTAC 5 cut(s) 210, 357, 499, 736, 1053
RsaNI GTAC 5 cut(s) 209, 356, 498, 735, 1052
SaqAI TTAA 2 cut(s) 273, 903
SatI GCNGC 3 cut(s) 95, 479, 524
Sau3AI GATC 3 cut(s) 59, 685, 1039
Sau96I GGNCC 4 cut(s) 407, 485, 658, 874
ScaI AGTACT 2 cut(s) 499, 1053
SchI GAGTC 1 cut(s) 998
SfaNI GCATC 2 cut(s) 858, 949
SfcI CTRYAG 1 cut(s) 103
SinI GGWCC 4 cut(s) 407, 485, 658, 874
SpeI ACTAGT 2 cut(s) 965, 1022
Sse9I AATT 8 cut(s) 64, 341, 351, 460, 638, 701, 878, 1035
SsiI CCGC 1 cut(s) 152
SspI AATATT 2 cut(s) 180, 693
SspMI CTAG 5 cut(s) 197, 231, 966, 1023, 1069
TaaI ACNGT 1 cut(s) 751
TaiI ACGT 1 cut(s) 361
TaqI TCGA 2 cut(s) 505, 688
TasI AATT 8 cut(s) 64, 341, 351, 460, 638, 701, 878, 1035
TatI WGTACW 3 cut(s) 208, 497, 1051
TfiI GAWTC 3 cut(s) 293, 373, 779
Tru1I TTAA 2 cut(s) 273, 903
Tru9I TTAA 2 cut(s) 273, 903
TscAI CASTG 1 cut(s) 141
TseFI GTSAC 2 cut(s) 236, 336
TseI GCWGC 3 cut(s) 94, 478, 523
Tsp45I GTSAC 2 cut(s) 236, 336
TspDTI ATGAA 5 cut(s) 17, 482, 714, 990, 998
TspRI CASTG 1 cut(s) 141
VpaK11BI GGWCC 4 cut(s) 407, 485, 658, 874
XapI RAATTY 1 cut(s) 460
XbaI TCTAGA 1 cut(s) 196
XcmI CCANNNNNNNNNTGG 1 cut(s) 704
XmiI GTMKAC 1 cut(s) 110
XmnI GAANNNNTTC 1 cut(s) 1005
XspI CTAG 5 cut(s) 197, 231, 966, 1023, 1069
ZrmI AGTACT 2 cut(s) 499, 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.