Plant transposase (Ptta/En/Spm family)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ABC_membrane | PF00664 | 326 - 599 | 9.8e-55 | ABC transporter transmembrane region |
| ABC_tran | PF00005 | 671 - 819 | 1.3e-31 | ABC transporter |
| SMC_N | PF02463 | 948 - 1492 | 8.6e-07 | RecF/RecN/SMC N terminal domain |
| ABC_membrane | PF00664 | 960 - 1231 | 3.3e-43 | ABC transporter transmembrane region |
| ABC_tran | PF00005 | 1302 - 1449 | 2.2e-30 | ABC transporter |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2900 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 675 |
| Acc36I | ACCTGC | 1 cut(s) | 2900 |
| AccB1I | GGYRCC | 2 cut(s) | 787, 1633 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 797, 2626 |
| AccBSI | CCGCTC | 3 cut(s) | 99, 122, 321 |
| AccI | GTMKAC | 1 cut(s) | 2081 |
| AccII | CGCG | 1 cut(s) | 3002 |
| AclWI | GGATC | 4 cut(s) | 1599, 1901, 3970, 4001 |
| AcoI | YGGCCR | 4 cut(s) | 43, 757, 778, 812 |
| AcsI | RAATTY | 5 cut(s) | 565, 1302, 1958, 2505, 3908 |
| AcuI | CTGAAG | 3 cut(s) | 2016, 2147, 4331 |
| AcvI | CACGTG | 1 cut(s) | 810 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 74, 357, 797, 2123, 2440, 2626, 4016 |
| AflII | CTTAAG | 1 cut(s) | 434 |
| AflIII | ACRYGT | 3 cut(s) | 189, 807, 2241 |
| AgeI | ACCGGT | 1 cut(s) | 109 |
| AhlI | ACTAGT | 1 cut(s) | 827 |
| AjiI | CACGTC | 1 cut(s) | 291 |
| AjnI | CCWGG | 4 cut(s) | 212, 300, 2729, 3145 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1996, 2028, 2802, 2834, 4227, 4259 |
| AleI | CACNNNNGTG | 1 cut(s) | 68 |
| Alw21I | GWGCWC | 6 cut(s) | 290, 1000, 2217, 2871, 3695, 4354 |
| Alw26I | GTCTC | 8 cut(s) | 150, 418, 1020, 1992, 2349, 2471, 3193, 4366 |
| Alw44I | GTGCAC | 1 cut(s) | 4350 |
| AlwI | GGATC | 4 cut(s) | 1599, 1901, 3970, 4001 |
| Ama87I | CYCGRG | 3 cut(s) | 127, 2406, 3566 |
| ApaI | GGGCCC | 1 cut(s) | 3390 |
| ApaLI | GTGCAC | 1 cut(s) | 4350 |
| ApoI | RAATTY | 5 cut(s) | 565, 1302, 1958, 2505, 3908 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 34 |
| AseI | ATTAAT | 2 cut(s) | 1619, 3791 |
| AsiGI | ACCGGT | 1 cut(s) | 109 |
| AspLEI | GCGC | 2 cut(s) | 584, 3004 |
| AsuC2I | CCSGG | 1 cut(s) | 4151 |
| AsuNHI | GCTAGC | 2 cut(s) | 3313, 3419 |
| AvaI | CYCGRG | 3 cut(s) | 127, 2406, 3566 |
| AvaII | GGWCC | 3 cut(s) | 1854, 2422, 2806 |
| AxyI | CCTNAGG | 2 cut(s) | 2512, 3888 |
| BaeGI | GKGCMC | 4 cut(s) | 316, 790, 3390, 4354 |
| BalI | TGGCCA | 2 cut(s) | 759, 780 |
| BanI | GGYRCC | 2 cut(s) | 787, 1633 |
| BanII | GRGCYC | 5 cut(s) | 260, 272, 2871, 3390, 3695 |
| BbrPI | CACGTG | 1 cut(s) | 810 |
| BbsI | GAAGAC | 1 cut(s) | 1426 |
| Bbv12I | GWGCWC | 6 cut(s) | 290, 1000, 2217, 2871, 3695, 4354 |
| BceAI | ACGGC | 1 cut(s) | 3209 |
| BcgI | CGANNNNNNTGC | 5 cut(s) | 63, 97, 1957, 1991, 4559 |
| BciT130I | CCWGG | 4 cut(s) | 214, 302, 2731, 3147 |
| BciVI | GTATCC | 1 cut(s) | 1382 |
| BclI | TGATCA | 7 cut(s) | 694, 727, 853, 874, 2415, 3372, 3489 |
| BcnI | CCSGG | 1 cut(s) | 4151 |
| BcoDI | GTCTC | 8 cut(s) | 150, 418, 1020, 1992, 2349, 2471, 3193, 4366 |
| BcuI | ACTAGT | 1 cut(s) | 827 |
| BfmI | CTRYAG | 5 cut(s) | 6, 1065, 1536, 1912, 2481 |
| BfoI | RGCGCY | 1 cut(s) | 585 |
| BfrI | CTTAAG | 1 cut(s) | 434 |
| BfuAI | ACCTGC | 1 cut(s) | 2900 |
| BfuI | GTATCC | 1 cut(s) | 1382 |
| BglII | AGATCT | 2 cut(s) | 207, 1202 |
| BlpI | GCTNAGC | 2 cut(s) | 259, 322 |
| BmcAI | AGTACT | 2 cut(s) | 395, 3018 |
| Bme1390I | CCNGG | 5 cut(s) | 214, 302, 2731, 3147, 4151 |
| Bme18I | GGWCC | 3 cut(s) | 1854, 2422, 2806 |
| BmeT110I | CYCGRG | 3 cut(s) | 127, 2406, 3566 |
| BmgBI | CACGTC | 1 cut(s) | 291 |
| BmiI | GGNNCC | 9 cut(s) | 789, 1093, 1635, 1855, 2208, 2424, 3388, 3519, 4505 |
| BmrFI | CCNGG | 5 cut(s) | 214, 302, 2731, 3147, 4151 |
| BmrI | ACTGGG | 1 cut(s) | 1913 |
| BmsI | GCATC | 5 cut(s) | 895, 3394, 4144, 4168, 4497 |
| BmtI | GCTAGC | 2 cut(s) | 3317, 3423 |
| BmuI | ACTGGG | 1 cut(s) | 1913 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2483 |
| BpiI | GAAGAC | 1 cut(s) | 1426 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1192, 1224, 3301, 3333 |
| BpmI | CTGGAG | 2 cut(s) | 382, 1782 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1662, 1746, 2177, 2865 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 259, 322 |
| BpuEI | CTTGAG | 6 cut(s) | 3385, 3462, 3561, 3902, 3999, 4209 |
| BpuMI | CCSGG | 1 cut(s) | 4151 |
| Bsa29I | ATCGAT | 1 cut(s) | 3238 |
| BsaAI | YACGTR | 1 cut(s) | 810 |
| BsaI | GGTCTC | 2 cut(s) | 150, 1020 |
| BsaJI | CCNNGG | 9 cut(s) | 177, 272, 530, 673, 744, 775, 781, 1022, 3414 |
| BsaWI | WCCGGW | 1 cut(s) | 109 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 326, 356, 380, 410, 469, 499, 1665, 1695 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 74, 357, 797, 2123, 2440, 2626, 4016 |
| Bse118I | RCCGGY | 3 cut(s) | 109, 3716, 4434 |
| Bse21I | CCTNAGG | 2 cut(s) | 2512, 3888 |
| Bse3DI | GCAATG | 3 cut(s) | 1773, 2292, 4134 |
| BseBI | CCWGG | 4 cut(s) | 214, 302, 2731, 3147 |
| BseCI | ATCGAT | 1 cut(s) | 3238 |
| BseDI | CCNNGG | 9 cut(s) | 177, 272, 530, 673, 744, 775, 781, 1022, 3414 |
| BseGI | GGATG | 7 cut(s) | 895, 901, 907, 2146, 2449, 4159, 4197 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 74, 357, 797, 2123, 2440, 2626, 4016 |
| BseMI | GCAATG | 3 cut(s) | 1773, 2292, 4134 |
| BseRI | GAGGAG | 3 cut(s) | 4, 493, 1523 |
| BseSI | GKGCMC | 4 cut(s) | 316, 790, 3390, 4354 |
| BseYI | CCCAGC | 3 cut(s) | 306, 554, 3078 |
| BsgI | GTGCAG | 4 cut(s) | 755, 1689, 3459, 4581 |
| Bsh1236I | CGCG | 1 cut(s) | 3002 |
| BshNI | GGYRCC | 2 cut(s) | 787, 1633 |
| BshTI | ACCGGT | 1 cut(s) | 109 |
| BshVI | ATCGAT | 1 cut(s) | 3238 |
| BsiHKAI | GWGCWC | 6 cut(s) | 290, 1000, 2217, 2871, 3695, 4354 |
| BsiHKCI | CYCGRG | 3 cut(s) | 127, 2406, 3566 |
| BsiSI | CCGG | 5 cut(s) | 42, 110, 3717, 4151, 4435 |
| BslFI | GGGAC | 3 cut(s) | 467, 1867, 3720 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 74, 357, 797, 2123, 2440, 2626, 4016 |
| BsmAI | GTCTC | 8 cut(s) | 150, 418, 1020, 1992, 2349, 2471, 3193, 4366 |
| BsmBI | CGTCTC | 1 cut(s) | 1992 |
| BsmFI | GGGAC | 3 cut(s) | 467, 1867, 3720 |
| BsmI | GAATGC | 2 cut(s) | 817, 2266 |
| Bso31I | GGTCTC | 2 cut(s) | 150, 1020 |
| BsoBI | CYCGRG | 3 cut(s) | 127, 2406, 3566 |
| Bsp120I | GGGCCC | 1 cut(s) | 3386 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 259, 322 |
| Bsp19I | CCATGG | 5 cut(s) | 272, 673, 744, 775, 781 |
| BspDI | ATCGAT | 1 cut(s) | 3238 |
| BspFNI | CGCG | 1 cut(s) | 3002 |
| BspHI | TCATGA | 5 cut(s) | 802, 877, 2146, 3051, 4518 |
| BspLI | GGNNCC | 9 cut(s) | 789, 1093, 1635, 1855, 2208, 2424, 3388, 3519, 4505 |
| BspMAI | CTGCAG | 1 cut(s) | 10 |
| BspMI | ACCTGC | 1 cut(s) | 2900 |
| BspOI | GCTAGC | 2 cut(s) | 3317, 3423 |
| BspPI | GGATC | 4 cut(s) | 1599, 1901, 3970, 4001 |
| BspT107I | GGYRCC | 2 cut(s) | 787, 1633 |
| BspTI | CTTAAG | 1 cut(s) | 434 |
| BspTNI | GGTCTC | 2 cut(s) | 150, 1020 |
| BsrBI | CCGCTC | 3 cut(s) | 99, 122, 321 |
| BsrDI | GCAATG | 3 cut(s) | 1773, 2292, 4134 |
| BsrFI | RCCGGY | 3 cut(s) | 109, 3716, 4434 |
| BssAI | RCCGGY | 3 cut(s) | 109, 3716, 4434 |
| BssECI | CCNNGG | 9 cut(s) | 177, 272, 530, 673, 744, 775, 781, 1022, 3414 |
| BssT1I | CCWWGG | 8 cut(s) | 272, 530, 673, 744, 775, 781, 1022, 3414 |
| Bst2UI | CCWGG | 4 cut(s) | 214, 302, 2731, 3147 |
| Bst6I | CTCTTC | 4 cut(s) | 1023, 1216, 2790, 3053 |
| BstAFI | CTTAAG | 1 cut(s) | 434 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1622, 2285, 4349 |
| BstBAI | YACGTR | 1 cut(s) | 810 |
| BstDSI | CCRYGG | 5 cut(s) | 272, 673, 744, 775, 781 |
| BstEII | GGTNACC | 1 cut(s) | 2609 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 72, 2121 |
| BstF5I | GGATG | 7 cut(s) | 895, 901, 907, 2146, 2449, 4159, 4197 |
| BstFNI | CGCG | 1 cut(s) | 3002 |
| BstH2I | RGCGCY | 1 cut(s) | 585 |
| BstHHI | GCGC | 2 cut(s) | 584, 3004 |
| BstMAI | GTCTC | 8 cut(s) | 150, 418, 1020, 1992, 2349, 2471, 3193, 4366 |
| BstNI | CCWGG | 4 cut(s) | 214, 302, 2731, 3147 |
| BstNSI | RCATGY | 3 cut(s) | 193, 2905, 2909 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2483 |
| BstPI | GGTNACC | 1 cut(s) | 2609 |
| BstSCI | CCNGG | 5 cut(s) | 212, 300, 2729, 3145, 4149 |
| BstSFI | CTRYAG | 5 cut(s) | 6, 1065, 1536, 1912, 2481 |
| BstSLI | GKGCMC | 4 cut(s) | 316, 790, 3390, 4354 |
| BstUI | CGCG | 1 cut(s) | 3002 |
| BstV2I | GAAGAC | 1 cut(s) | 1426 |
| BstX2I | RGATCY | 3 cut(s) | 207, 1202, 1906 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 70, 680, 782 |
| BstYI | RGATCY | 3 cut(s) | 207, 1202, 1906 |
| Bsu15I | ATCGAT | 1 cut(s) | 3238 |
| Bsu36I | CCTNAGG | 2 cut(s) | 2512, 3888 |
| BsuI | GTATCC | 1 cut(s) | 1382 |
| BsuTUI | ATCGAT | 1 cut(s) | 3238 |
| BtgI | CCRYGG | 5 cut(s) | 272, 673, 744, 775, 781 |
| BtgZI | GCGATG | 1 cut(s) | 2426 |
| BtrI | CACGTC | 1 cut(s) | 291 |
| BtsCI | GGATG | 7 cut(s) | 895, 901, 907, 2146, 2449, 4159, 4197 |
| BtsI | GCAGTG | 2 cut(s) | 583, 3805 |
| BveI | ACCTGC | 1 cut(s) | 2900 |
| CciI | TCATGA | 5 cut(s) | 802, 877, 2146, 3051, 4518 |
| CfoI | GCGC | 2 cut(s) | 584, 3004 |
| Cfr10I | RCCGGY | 3 cut(s) | 109, 3716, 4434 |
| ClaI | ATCGAT | 1 cut(s) | 3238 |
| CseI | GACGC | 1 cut(s) | 4394 |
| CsiI | ACCWGGT | 1 cut(s) | 3145 |
| CspAI | ACCGGT | 1 cut(s) | 109 |
| DraI | TTTAAA | 2 cut(s) | 517, 1963 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 675 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 675 |
| EaeI | YGGCCR | 4 cut(s) | 43, 757, 778, 812 |
| Eam1104I | CTCTTC | 4 cut(s) | 1023, 1216, 2790, 3053 |
| EarI | CTCTTC | 4 cut(s) | 1023, 1216, 2790, 3053 |
| Ecl136II | GAGCTC | 2 cut(s) | 2869, 3693 |
| Eco130I | CCWWGG | 8 cut(s) | 272, 530, 673, 744, 775, 781, 1022, 3414 |
| Eco147I | AGGCCT | 2 cut(s) | 2863, 3886 |
| Eco24I | GRGCYC | 5 cut(s) | 260, 272, 2871, 3390, 3695 |
| Eco31I | GGTCTC | 2 cut(s) | 150, 1020 |
| Eco47I | GGWCC | 3 cut(s) | 1854, 2422, 2806 |
| Eco53kI | GAGCTC | 2 cut(s) | 2869, 3693 |
| Eco57I | CTGAAG | 3 cut(s) | 2016, 2147, 4331 |
| Eco72I | CACGTG | 1 cut(s) | 810 |
| Eco81I | CCTNAGG | 2 cut(s) | 2512, 3888 |
| Eco88I | CYCGRG | 3 cut(s) | 127, 2406, 3566 |
| Eco91I | GGTNACC | 1 cut(s) | 2609 |
| EcoICRI | GAGCTC | 2 cut(s) | 2869, 3693 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 72, 2121 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1091, 2422, 3386 |
| EcoO65I | GGTNACC | 1 cut(s) | 2609 |
| EcoRII | CCWGG | 4 cut(s) | 212, 300, 2729, 3145 |
| EcoT14I | CCWWGG | 8 cut(s) | 272, 530, 673, 744, 775, 781, 1022, 3414 |
| EcoT22I | ATGCAT | 3 cut(s) | 1299, 2907, 4582 |
| EcoT38I | GRGCYC | 5 cut(s) | 260, 272, 2871, 3390, 3695 |
| ErhI | CCWWGG | 8 cut(s) | 272, 530, 673, 744, 775, 781, 1022, 3414 |
| Esp3I | CGTCTC | 1 cut(s) | 1992 |
| FaqI | GGGAC | 3 cut(s) | 467, 1867, 3720 |
| FauI | CCCGC | 3 cut(s) | 104, 350, 353 |
| FauNDI | CATATG | 2 cut(s) | 1382, 3983 |
| FbaI | TGATCA | 7 cut(s) | 694, 727, 853, 874, 2415, 3372, 3489 |
| FblI | GTMKAC | 1 cut(s) | 2081 |
| FokI | GGATG | 7 cut(s) | 902, 908, 914, 2153, 2456, 4166, 4184 |
| FriOI | GRGCYC | 5 cut(s) | 260, 272, 2871, 3390, 3695 |
| GlaI | GCGC | 2 cut(s) | 583, 3003 |
| GsaI | CCCAGC | 3 cut(s) | 310, 558, 3082 |
| GsuI | CTGGAG | 2 cut(s) | 382, 1782 |
| HaeII | RGCGCY | 1 cut(s) | 585 |
| HapII | CCGG | 5 cut(s) | 42, 110, 3717, 4151, 4435 |
| HgaI | GACGC | 1 cut(s) | 4394 |
| HhaI | GCGC | 2 cut(s) | 584, 3004 |
| Hin6I | GCGC | 2 cut(s) | 582, 3002 |
| HinP1I | GCGC | 2 cut(s) | 582, 3002 |
| HincII | GTYRAC | 1 cut(s) | 1461 |
| HindII | GTYRAC | 1 cut(s) | 1461 |
| HindIII | AAGCTT | 1 cut(s) | 4191 |
| HpaI | GTTAAC | 1 cut(s) | 1461 |
| HpaII | CCGG | 5 cut(s) | 42, 110, 3717, 4151, 4435 |
| Hpy166II | GTNNAC | 5 cut(s) | 668, 1461, 2082, 3664, 4352 |
| Hpy8I | GTNNAC | 5 cut(s) | 668, 1461, 2082, 3664, 4352 |
| Hpy99I | CGWCG | 2 cut(s) | 85, 232 |
| HpyAV | CCTTC | 8 cut(s) | 135, 1387, 1800, 1944, 2444, 3125, 4015, 4068 |
| HpyCH4IV | ACGT | 5 cut(s) | 55, 290, 444, 809, 2241 |
| HpySE526I | ACGT | 5 cut(s) | 55, 290, 444, 809, 2241 |
| HspAI | GCGC | 2 cut(s) | 582, 3002 |
| Ksp22I | TGATCA | 7 cut(s) | 694, 727, 853, 874, 2415, 3372, 3489 |
| KspAI | GTTAAC | 1 cut(s) | 1461 |
| LweI | GCATC | 5 cut(s) | 895, 3394, 4144, 4168, 4497 |
| MabI | ACCWGGT | 1 cut(s) | 3145 |
| MaeII | ACGT | 5 cut(s) | 55, 290, 444, 809, 2241 |
| MbiI | CCGCTC | 3 cut(s) | 99, 122, 321 |
| MflI | RGATCY | 3 cut(s) | 207, 1202, 1906 |
| MlsI | TGGCCA | 2 cut(s) | 759, 780 |
| MluNI | TGGCCA | 2 cut(s) | 759, 780 |
| MlyI | GAGTC | 4 cut(s) | 5, 86, 1683, 3772 |
| Mox20I | TGGCCA | 2 cut(s) | 759, 780 |
| Mph1103I | ATGCAT | 3 cut(s) | 1299, 2907, 4582 |
| MscI | TGGCCA | 2 cut(s) | 759, 780 |
| Msp20I | TGGCCA | 2 cut(s) | 759, 780 |
| MspA1I | CMGCKG | 1 cut(s) | 1529 |
| MspCI | CTTAAG | 1 cut(s) | 434 |
| MspI | CCGG | 5 cut(s) | 42, 110, 3717, 4151, 4435 |
| MspR9I | CCNGG | 5 cut(s) | 214, 302, 2731, 3147, 4151 |
| Mva1269I | GAATGC | 2 cut(s) | 817, 2266 |
| MvaI | CCWGG | 4 cut(s) | 214, 302, 2731, 3147 |
| MvnI | CGCG | 1 cut(s) | 3002 |
| NciI | CCSGG | 1 cut(s) | 4151 |
| NcoI | CCATGG | 5 cut(s) | 272, 673, 744, 775, 781 |
| NdeI | CATATG | 2 cut(s) | 1382, 3983 |
| NheI | GCTAGC | 2 cut(s) | 3313, 3419 |
| NlaIV | GGNNCC | 9 cut(s) | 789, 1093, 1635, 1855, 2208, 2424, 3388, 3519, 4505 |
| NmeAIII | GCCGAG | 2 cut(s) | 1567, 1895 |
| NmuCI | GTSAC | 7 cut(s) | 412, 738, 830, 1821, 2157, 2677, 3862 |
| NsiI | ATGCAT | 3 cut(s) | 1299, 2907, 4582 |
| NspI | RCATGY | 3 cut(s) | 193, 2905, 2909 |
| OliI | CACNNNNGTG | 1 cut(s) | 68 |
| PaeI | GCATGC | 2 cut(s) | 2905, 2909 |
| PaeR7I | CTCGAG | 2 cut(s) | 127, 2406 |
| PagI | TCATGA | 5 cut(s) | 802, 877, 2146, 3051, 4518 |
| PaqCI | CACCTGC | 1 cut(s) | 2900 |
| PceI | AGGCCT | 2 cut(s) | 2863, 3886 |
| PciI | ACATGT | 1 cut(s) | 189 |
| PctI | GAATGC | 2 cut(s) | 817, 2266 |
| PfeI | GAWTC | 7 cut(s) | 1070, 2430, 2471, 2917, 2997, 3206, 4364 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 797, 2626 |
| PinAI | ACCGGT | 1 cut(s) | 109 |
| PleI | GAGTC | 4 cut(s) | 5, 86, 1682, 3772 |
| PmaCI | CACGTG | 1 cut(s) | 810 |
| PmlI | CACGTG | 1 cut(s) | 810 |
| PpsI | GAGTC | 4 cut(s) | 5, 86, 1682, 3772 |
| Ppu21I | YACGTR | 1 cut(s) | 810 |
| PpuMI | RGGWCCY | 1 cut(s) | 2422 |
| PscI | ACATGT | 1 cut(s) | 189 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2483 |
| PshBI | ATTAAT | 2 cut(s) | 1619, 3791 |
| Psp124BI | GAGCTC | 2 cut(s) | 2871, 3695 |
| Psp5II | RGGWCCY | 1 cut(s) | 2422 |
| Psp6I | CCWGG | 4 cut(s) | 212, 300, 2729, 3145 |
| PspCI | CACGTG | 1 cut(s) | 810 |
| PspEI | GGTNACC | 1 cut(s) | 2609 |
| PspFI | CCCAGC | 3 cut(s) | 306, 554, 3078 |
| PspGI | CCWGG | 4 cut(s) | 212, 300, 2729, 3145 |
| PspN4I | GGNNCC | 9 cut(s) | 789, 1093, 1635, 1855, 2208, 2424, 3388, 3519, 4505 |
| PspOMI | GGGCCC | 1 cut(s) | 3386 |
| PspPPI | RGGWCCY | 1 cut(s) | 2422 |
| PspXI | VCTCGAGB | 1 cut(s) | 2406 |
| PstI | CTGCAG | 1 cut(s) | 10 |
| PsuI | RGATCY | 3 cut(s) | 207, 1202, 1906 |
| PvuII | CAGCTG | 1 cut(s) | 1529 |
| SacI | GAGCTC | 2 cut(s) | 2871, 3695 |
| ScaI | AGTACT | 2 cut(s) | 395, 3018 |
| SchI | GAGTC | 4 cut(s) | 5, 86, 1683, 3772 |
| ScrFI | CCNGG | 5 cut(s) | 214, 302, 2731, 3147, 4151 |
| SexAI | ACCWGGT | 1 cut(s) | 3145 |
| SfaNI | GCATC | 5 cut(s) | 895, 3394, 4144, 4168, 4497 |
| SfcI | CTRYAG | 5 cut(s) | 6, 1065, 1536, 1912, 2481 |
| Sfr274I | CTCGAG | 2 cut(s) | 127, 2406 |
| SinI | GGWCC | 3 cut(s) | 1854, 2422, 2806 |
| SlaI | CTCGAG | 2 cut(s) | 127, 2406 |
| SmlI | CTYRAG | 9 cut(s) | 127, 434, 2406, 3364, 3477, 3576, 3917, 4014, 4224 |
| SmoI | CTYRAG | 9 cut(s) | 127, 434, 2406, 3364, 3477, 3576, 3917, 4014, 4224 |
| SpeI | ACTAGT | 1 cut(s) | 827 |
| SphI | GCATGC | 2 cut(s) | 2905, 2909 |
| SseBI | AGGCCT | 2 cut(s) | 2863, 3886 |
| SspI | AATATT | 3 cut(s) | 383, 1610, 3427 |
| SstI | GAGCTC | 2 cut(s) | 2871, 3695 |
| StuI | AGGCCT | 2 cut(s) | 2863, 3886 |
| StyD4I | CCNGG | 5 cut(s) | 212, 300, 2729, 3145, 4149 |
| StyI | CCWWGG | 8 cut(s) | 272, 530, 673, 744, 775, 781, 1022, 3414 |
| TaiI | ACGT | 5 cut(s) | 58, 293, 447, 812, 2244 |
| TaqI | TCGA | 7 cut(s) | 21, 128, 1945, 2407, 2782, 3238, 3833 |
| TatI | WGTACW | 2 cut(s) | 393, 3016 |
| TauI | GCSGC | 1 cut(s) | 817 |
| TfiI | GAWTC | 7 cut(s) | 1070, 2430, 2471, 2917, 2997, 3206, 4364 |
| TseFI | GTSAC | 7 cut(s) | 412, 738, 830, 1821, 2157, 2677, 3862 |
| Tsp45I | GTSAC | 7 cut(s) | 412, 738, 830, 1821, 2157, 2677, 3862 |
| TspGWI | ACGGA | 2 cut(s) | 3113, 3606 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 797, 2626 |
| Vha464I | CTTAAG | 1 cut(s) | 434 |
| VneI | GTGCAC | 1 cut(s) | 4350 |
| VpaK11BI | GGWCC | 3 cut(s) | 1854, 2422, 2806 |
| VspI | ATTAAT | 2 cut(s) | 1619, 3791 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 72, 2121 |
| XapI | RAATTY | 5 cut(s) | 565, 1302, 1958, 2505, 3908 |
| XbaI | TCTAGA | 1 cut(s) | 4333 |
| XceI | RCATGY | 3 cut(s) | 193, 2905, 2909 |
| XhoI | CTCGAG | 2 cut(s) | 127, 2406 |
| XmiI | GTMKAC | 1 cut(s) | 2081 |
| ZrmI | AGTACT | 2 cut(s) | 395, 3018 |
| Zsp2I | ATGCAT | 3 cut(s) | 1299, 2907, 4582 |