regulation of response to stimulus
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRR_14 | PF23598 | 75 - 157 | 8.1e-08 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 99 - 159 | 3.9e-07 | Leucine rich repeat |
| LRR_14 | PF23598 | 164 - 274 | 2.7e-13 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 197 - 256 | 9.8e-07 | Leucine rich repeat |
| LRR_8 | PF13855 | 528 - 588 | 4.7e-08 | Leucine rich repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 468, 1751 |
| AccB1I | GGYRCC | 1 cut(s) | 1652 |
| AccI | GTMKAC | 2 cut(s) | 2001, 2071 |
| AccII | CGCG | 2 cut(s) | 165, 1640 |
| AccIII | TCCGGA | 2 cut(s) | 548, 1605 |
| AciI | CCGC | 9 cut(s) | 163, 165, 221, 1102, 1367, 1856, 1888, 2028, 2109 |
| AclWI | GGATC | 3 cut(s) | 1119, 1279, 2578 |
| AcoI | YGGCCR | 3 cut(s) | 409, 1137, 2232 |
| AcsI | RAATTY | 4 cut(s) | 82, 644, 1381, 1801 |
| AfaI | GTAC | 3 cut(s) | 749, 789, 2327 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 948, 1363, 1662, 1862, 2230, 2281, 2353, 2409 |
| AflIII | ACRYGT | 2 cut(s) | 2262, 2334 |
| AhlI | ACTAGT | 1 cut(s) | 770 |
| AjnI | CCWGG | 2 cut(s) | 1173, 1617 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 544, 576, 2000, 2032 |
| Alw21I | GWGCWC | 2 cut(s) | 1432, 2467 |
| Alw26I | GTCTC | 4 cut(s) | 254, 1110, 2168, 2343 |
| Alw44I | GTGCAC | 1 cut(s) | 2463 |
| AlwI | GGATC | 3 cut(s) | 1119, 1279, 2578 |
| Ama87I | CYCGRG | 4 cut(s) | 968, 1871, 2249, 2281 |
| Aor13HI | TCCGGA | 2 cut(s) | 548, 1605 |
| AoxI | GGCC | 6 cut(s) | 105, 409, 1137, 2091, 2212, 2232 |
| ApaLI | GTGCAC | 1 cut(s) | 2463 |
| ApeKI | GCWGC | 3 cut(s) | 1393, 1529, 1885 |
| ApoI | RAATTY | 4 cut(s) | 82, 644, 1381, 1801 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2015 |
| AspLEI | GCGC | 2 cut(s) | 13, 1642 |
| AspS9I | GGNCC | 4 cut(s) | 1562, 1841, 1865, 2092 |
| AsuC2I | CCSGG | 3 cut(s) | 352, 500, 733 |
| AsuHPI | GGTGA | 2 cut(s) | 2369, 2471 |
| AsuII | TTCGAA | 1 cut(s) | 2406 |
| AvaI | CYCGRG | 4 cut(s) | 968, 1871, 2249, 2281 |
| AvaII | GGWCC | 3 cut(s) | 1562, 1841, 1865 |
| BaeGI | GKGCMC | 1 cut(s) | 2467 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1583, 1616 |
| BalI | TGGCCA | 1 cut(s) | 2234 |
| BanI | GGYRCC | 1 cut(s) | 1652 |
| BbsI | GAAGAC | 2 cut(s) | 2423, 2499 |
| Bbv12I | GWGCWC | 2 cut(s) | 1432, 2467 |
| BbvI | GCAGC | 3 cut(s) | 1380, 1516, 1872 |
| BccI | CCATC | 2 cut(s) | 1643, 1976 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2396, 2430 |
| BciT130I | CCWGG | 2 cut(s) | 1175, 1619 |
| BciVI | GTATCC | 1 cut(s) | 1640 |
| BcnI | CCSGG | 3 cut(s) | 352, 500, 733 |
| BcoDI | GTCTC | 4 cut(s) | 254, 1110, 2168, 2343 |
| BcuI | ACTAGT | 1 cut(s) | 770 |
| BfaI | CTAG | 6 cut(s) | 771, 948, 998, 1473, 2258, 2303 |
| BfmI | CTRYAG | 1 cut(s) | 1316 |
| BfoI | RGCGCY | 1 cut(s) | 14 |
| BfuI | GTATCC | 1 cut(s) | 1640 |
| BisI | GCNGC | 5 cut(s) | 1394, 1530, 1886, 2029, 2109 |
| BlsI | GCNGC | 5 cut(s) | 1395, 1531, 1887, 2030, 2110 |
| Bme1390I | CCNGG | 5 cut(s) | 352, 500, 733, 1175, 1619 |
| Bme18I | GGWCC | 3 cut(s) | 1562, 1841, 1865 |
| BmeT110I | CYCGRG | 4 cut(s) | 968, 1871, 2249, 2281 |
| BmgT120I | GGNCC | 4 cut(s) | 1562, 1841, 1865, 2092 |
| BmiI | GGNNCC | 3 cut(s) | 1304, 1564, 1654 |
| BmrFI | CCNGG | 5 cut(s) | 352, 500, 733, 1175, 1619 |
| BmrI | ACTGGG | 1 cut(s) | 2394 |
| BmsI | GCATC | 4 cut(s) | 1039, 1867, 1967, 2035 |
| BmuI | ACTGGG | 1 cut(s) | 2394 |
| BpiI | GAAGAC | 2 cut(s) | 2423, 2499 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 992, 1024, 1294, 1326 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2088 |
| Bpu14I | TTCGAA | 1 cut(s) | 2406 |
| BpuEI | CTTGAG | 5 cut(s) | 1010, 1210, 1220, 2261, 2423 |
| BpuMI | CCSGG | 3 cut(s) | 352, 500, 733 |
| BsaAI | YACGTR | 1 cut(s) | 896 |
| BsaI | GGTCTC | 2 cut(s) | 1110, 2168 |
| BsaJI | CCNNGG | 6 cut(s) | 163, 406, 499, 1173, 1357, 1706 |
| BsaWI | WCCGGW | 3 cut(s) | 548, 1605, 2623 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 317, 347, 1232, 1262, 2000, 2030 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 948, 1363, 1662, 1862, 2230, 2281, 2353, 2409 |
| Bse1I | ACTGG | 7 cut(s) | 100, 484, 1140, 1564, 1955, 2389, 2464 |
| BseAI | TCCGGA | 2 cut(s) | 548, 1605 |
| BseBI | CCWGG | 2 cut(s) | 1175, 1619 |
| BseDI | CCNNGG | 6 cut(s) | 163, 406, 499, 1173, 1357, 1706 |
| BseGI | GGATG | 2 cut(s) | 846, 1161 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 948, 1363, 1662, 1862, 2230, 2281, 2353, 2409 |
| BseMII | CTCAG | 2 cut(s) | 265, 1281 |
| BseNI | ACTGG | 7 cut(s) | 100, 484, 1140, 1564, 1955, 2389, 2464 |
| BseRI | GAGGAG | 6 cut(s) | 325, 851, 925, 1075, 1842, 2021 |
| BseSI | GKGCMC | 1 cut(s) | 2467 |
| BseXI | GCAGC | 3 cut(s) | 1380, 1516, 1872 |
| Bsh1236I | CGCG | 2 cut(s) | 165, 1640 |
| Bsh1285I | CGRYCG | 1 cut(s) | 225 |
| BshFI | GGCC | 6 cut(s) | 107, 411, 1139, 2093, 2214, 2234 |
| BshNI | GGYRCC | 1 cut(s) | 1652 |
| BsiEI | CGRYCG | 1 cut(s) | 225 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1432, 2467 |
| BsiHKCI | CYCGRG | 4 cut(s) | 968, 1871, 2249, 2281 |
| BsiSI | CCGG | 6 cut(s) | 351, 499, 549, 733, 1606, 2624 |
| BslFI | GGGAC | 3 cut(s) | 99, 1548, 2299 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 948, 1363, 1662, 1862, 2230, 2281, 2353, 2409 |
| BsmAI | GTCTC | 4 cut(s) | 254, 1110, 2168, 2343 |
| BsmFI | GGGAC | 3 cut(s) | 99, 1548, 2299 |
| BsmI | GAATGC | 1 cut(s) | 2419 |
| BsnI | GGCC | 6 cut(s) | 107, 411, 1139, 2093, 2214, 2234 |
| Bso31I | GGTCTC | 2 cut(s) | 1110, 2168 |
| BsoBI | CYCGRG | 4 cut(s) | 968, 1871, 2249, 2281 |
| Bsp119I | TTCGAA | 1 cut(s) | 2406 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1432, 2467 |
| Bsp13I | TCCGGA | 2 cut(s) | 548, 1605 |
| Bsp1407I | TGTACA | 1 cut(s) | 787 |
| Bsp143I | GATC | 6 cut(s) | 310, 1111, 1284, 1438, 1537, 2570 |
| BspACI | CCGC | 9 cut(s) | 163, 165, 221, 1102, 1367, 1856, 1888, 2028, 2109 |
| BspANI | GGCC | 6 cut(s) | 107, 411, 1139, 2093, 2214, 2234 |
| BspCNI | CTCAG | 2 cut(s) | 264, 1282 |
| BspEI | TCCGGA | 2 cut(s) | 548, 1605 |
| BspFNI | CGCG | 2 cut(s) | 165, 1640 |
| BspLI | GGNNCC | 3 cut(s) | 1304, 1564, 1654 |
| BspPI | GGATC | 3 cut(s) | 1119, 1279, 2578 |
| BspT104I | TTCGAA | 1 cut(s) | 2406 |
| BspT107I | GGYRCC | 1 cut(s) | 1652 |
| BspTNI | GGTCTC | 2 cut(s) | 1110, 2168 |
| BsrGI | TGTACA | 1 cut(s) | 787 |
| BsrI | ACTGG | 7 cut(s) | 100, 484, 1140, 1564, 1955, 2389, 2464 |
| BssECI | CCNNGG | 6 cut(s) | 163, 406, 499, 1173, 1357, 1706 |
| BssMI | GATC | 6 cut(s) | 310, 1111, 1284, 1438, 1537, 2570 |
| BssNAI | GTATAC | 1 cut(s) | 2002 |
| BssT1I | CCWWGG | 2 cut(s) | 1357, 1706 |
| Bst1107I | GTATAC | 1 cut(s) | 2002 |
| Bst2UI | CCWGG | 2 cut(s) | 1175, 1619 |
| Bst4CI | ACNGT | 6 cut(s) | 179, 275, 569, 1127, 1199, 1320 |
| Bst6I | CTCTTC | 5 cut(s) | 287, 343, 1085, 1317, 1824 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 887, 2180 |
| BstAUI | TGTACA | 1 cut(s) | 787 |
| BstBAI | YACGTR | 1 cut(s) | 896 |
| BstBI | TTCGAA | 1 cut(s) | 2406 |
| BstC8I | GCNNGC | 3 cut(s) | 447, 1928, 2085 |
| BstDEI | CTNAG | 8 cut(s) | 239, 251, 506, 741, 877, 1290, 1742, 2088 |
| BstDSI | CCRYGG | 1 cut(s) | 163 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 946 |
| BstF5I | GGATG | 2 cut(s) | 846, 1161 |
| BstFNI | CGCG | 2 cut(s) | 165, 1640 |
| BstH2I | RGCGCY | 1 cut(s) | 14 |
| BstHHI | GCGC | 2 cut(s) | 13, 1642 |
| BstKTI | GATC | 6 cut(s) | 313, 1114, 1287, 1441, 1540, 2573 |
| BstMAI | GTCTC | 4 cut(s) | 254, 1110, 2168, 2343 |
| BstMBI | GATC | 6 cut(s) | 310, 1111, 1284, 1438, 1537, 2570 |
| BstMCI | CGRYCG | 1 cut(s) | 225 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 408, 887, 1518, 2180 |
| BstNI | CCWGG | 2 cut(s) | 1175, 1619 |
| BstNSI | RCATGY | 1 cut(s) | 2266 |
| BstSCI | CCNGG | 5 cut(s) | 350, 498, 731, 1173, 1617 |
| BstSFI | CTRYAG | 1 cut(s) | 1316 |
| BstSLI | GKGCMC | 1 cut(s) | 2467 |
| BstUI | CGCG | 2 cut(s) | 165, 1640 |
| BstV1I | GCAGC | 3 cut(s) | 1380, 1516, 1872 |
| BstV2I | GAAGAC | 2 cut(s) | 2423, 2499 |
| BstX2I | RGATCY | 3 cut(s) | 1111, 1284, 2570 |
| BstYI | RGATCY | 3 cut(s) | 1111, 1284, 2570 |
| BstZ17I | GTATAC | 1 cut(s) | 2002 |
| BsuI | GTATCC | 1 cut(s) | 1640 |
| BsuRI | GGCC | 6 cut(s) | 107, 411, 1139, 2093, 2214, 2234 |
| BtgI | CCRYGG | 1 cut(s) | 163 |
| BtgZI | GCGATG | 1 cut(s) | 1713 |
| BtsCI | GGATG | 2 cut(s) | 846, 1161 |
| BtsI | GCAGTG | 2 cut(s) | 234, 2559 |
| Cac8I | GCNNGC | 3 cut(s) | 447, 1928, 2085 |
| CfoI | GCGC | 2 cut(s) | 13, 1642 |
| Cfr13I | GGNCC | 4 cut(s) | 1562, 1841, 1865, 2092 |
| Cfr42I | CCGCGG | 1 cut(s) | 166 |
| CseI | GACGC | 1 cut(s) | 1646 |
| Csp6I | GTAC | 3 cut(s) | 748, 788, 2326 |
| CviAII | CATG | 4 cut(s) | 961, 1575, 2077, 2263 |
| CviQI | GTAC | 3 cut(s) | 748, 788, 2326 |
| DdeI | CTNAG | 8 cut(s) | 239, 251, 506, 741, 877, 1290, 1742, 2088 |
| DpnI | GATC | 6 cut(s) | 312, 1113, 1286, 1440, 1539, 2572 |
| DpnII | GATC | 6 cut(s) | 310, 1111, 1284, 1438, 1537, 2570 |
| DraI | TTTAAA | 1 cut(s) | 81 |
| EaeI | YGGCCR | 3 cut(s) | 409, 1137, 2232 |
| Eam1104I | CTCTTC | 5 cut(s) | 287, 343, 1085, 1317, 1824 |
| EarI | CTCTTC | 5 cut(s) | 287, 343, 1085, 1317, 1824 |
| EciI | GGCGGA | 1 cut(s) | 1382 |
| Eco130I | CCWWGG | 2 cut(s) | 1357, 1706 |
| Eco31I | GGTCTC | 2 cut(s) | 1110, 2168 |
| Eco47I | GGWCC | 3 cut(s) | 1562, 1841, 1865 |
| Eco88I | CYCGRG | 4 cut(s) | 968, 1871, 2249, 2281 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 946 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1865, 2092 |
| EcoRII | CCWGG | 2 cut(s) | 1173, 1617 |
| EcoT14I | CCWWGG | 2 cut(s) | 1357, 1706 |
| ErhI | CCWWGG | 2 cut(s) | 1357, 1706 |
| FaeI | CATG | 4 cut(s) | 964, 1578, 2080, 2266 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1416, 1448 |
| FaqI | GGGAC | 3 cut(s) | 99, 1548, 2299 |
| FatI | CATG | 4 cut(s) | 960, 1574, 2076, 2262 |
| FauI | CCCGC | 1 cut(s) | 170 |
| FblI | GTMKAC | 2 cut(s) | 2001, 2071 |
| Fnu4HI | GCNGC | 5 cut(s) | 1394, 1530, 1886, 2029, 2109 |
| FokI | GGATG | 2 cut(s) | 833, 1148 |
| Fsp4HI | GCNGC | 5 cut(s) | 1394, 1530, 1886, 2029, 2109 |
| FspBI | CTAG | 6 cut(s) | 771, 948, 998, 1473, 2258, 2303 |
| GlaI | GCGC | 2 cut(s) | 12, 1641 |
| GluI | GCNGC | 5 cut(s) | 1394, 1530, 1886, 2029, 2109 |
| HaeII | RGCGCY | 1 cut(s) | 14 |
| HaeIII | GGCC | 6 cut(s) | 107, 411, 1139, 2093, 2214, 2234 |
| HapII | CCGG | 6 cut(s) | 351, 499, 549, 733, 1606, 2624 |
| HgaI | GACGC | 1 cut(s) | 1646 |
| HhaI | GCGC | 2 cut(s) | 13, 1642 |
| Hin1II | CATG | 4 cut(s) | 964, 1578, 2080, 2266 |
| Hin6I | GCGC | 2 cut(s) | 11, 1640 |
| HinP1I | GCGC | 2 cut(s) | 11, 1640 |
| HincII | GTYRAC | 3 cut(s) | 738, 1170, 1185 |
| HindII | GTYRAC | 3 cut(s) | 738, 1170, 1185 |
| HindIII | AAGCTT | 3 cut(s) | 1700, 1791, 1924 |
| HpaI | GTTAAC | 1 cut(s) | 738 |
| HpaII | CCGG | 6 cut(s) | 351, 499, 549, 733, 1606, 2624 |
| HphI | GGTGA | 2 cut(s) | 2369, 2471 |
| Hpy188I | TCNGA | 5 cut(s) | 558, 1153, 1906, 2472, 2652 |
| Hpy99I | CGWCG | 2 cut(s) | 217, 2024 |
| HpyCH4III | ACNGT | 6 cut(s) | 179, 275, 569, 1127, 1199, 1320 |
| HpyCH4IV | ACGT | 5 cut(s) | 306, 595, 895, 1772, 2334 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 408, 887, 1518, 2180 |
| HpyF3I | CTNAG | 8 cut(s) | 239, 251, 506, 741, 877, 1290, 1742, 2088 |
| HpySE526I | ACGT | 5 cut(s) | 306, 595, 895, 1772, 2334 |
| Hsp92II | CATG | 4 cut(s) | 964, 1578, 2080, 2266 |
| HspAI | GCGC | 2 cut(s) | 11, 1640 |
| Kpn2I | TCCGGA | 2 cut(s) | 548, 1605 |
| KspAI | GTTAAC | 1 cut(s) | 738 |
| KspI | CCGCGG | 1 cut(s) | 166 |
| Kzo9I | GATC | 6 cut(s) | 310, 1111, 1284, 1438, 1537, 2570 |
| LmnI | GCTCC | 4 cut(s) | 1302, 1427, 2080, 2307 |
| Lsp1109I | GCAGC | 3 cut(s) | 1380, 1516, 1872 |
| LweI | GCATC | 4 cut(s) | 1039, 1867, 1967, 2035 |
| MaeI | CTAG | 6 cut(s) | 771, 948, 998, 1473, 2258, 2303 |
| MaeII | ACGT | 5 cut(s) | 306, 595, 895, 1772, 2334 |
| MaeIII | GTNAC | 8 cut(s) | 179, 302, 431, 596, 722, 1199, 1324, 2253 |
| MalI | GATC | 6 cut(s) | 312, 1113, 1286, 1440, 1539, 2572 |
| MboI | GATC | 6 cut(s) | 310, 1111, 1284, 1438, 1537, 2570 |
| MflI | RGATCY | 3 cut(s) | 1111, 1284, 2570 |
| MhlI | GDGCHC | 2 cut(s) | 1432, 2467 |
| MlsI | TGGCCA | 1 cut(s) | 2234 |
| MluNI | TGGCCA | 1 cut(s) | 2234 |
| MlyI | GAGTC | 4 cut(s) | 204, 852, 2127, 2261 |
| MmeI | TCCRAC | 2 cut(s) | 294, 1287 |
| Mox20I | TGGCCA | 1 cut(s) | 2234 |
| MroI | TCCGGA | 2 cut(s) | 548, 1605 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2015 |
| MscI | TGGCCA | 1 cut(s) | 2234 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2333 |
| Msp20I | TGGCCA | 1 cut(s) | 2234 |
| MspA1I | CMGCKG | 1 cut(s) | 165 |
| MspI | CCGG | 6 cut(s) | 351, 499, 549, 733, 1606, 2624 |
| MspR9I | CCNGG | 5 cut(s) | 352, 500, 733, 1175, 1619 |
| Mva1269I | GAATGC | 1 cut(s) | 2419 |
| MvaI | CCWGG | 2 cut(s) | 1175, 1619 |
| MvnI | CGCG | 2 cut(s) | 165, 1640 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 408, 887, 1518, 2180 |
| NciI | CCSGG | 3 cut(s) | 352, 500, 733 |
| NdeII | GATC | 6 cut(s) | 310, 1111, 1284, 1438, 1537, 2570 |
| NlaIII | CATG | 4 cut(s) | 964, 1578, 2080, 2266 |
| NlaIV | GGNNCC | 3 cut(s) | 1304, 1564, 1654 |
| NmeAIII | GCCGAG | 1 cut(s) | 387 |
| NmuCI | GTSAC | 3 cut(s) | 179, 1199, 2253 |
| NspI | RCATGY | 1 cut(s) | 2266 |
| NspV | TTCGAA | 1 cut(s) | 2406 |
| PaeR7I | CTCGAG | 1 cut(s) | 2249 |
| PciI | ACATGT | 1 cut(s) | 2262 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 143, 2321, 2665 |
| PctI | GAATGC | 1 cut(s) | 2419 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2015 |
| PkrI | GCNGC | 5 cut(s) | 1395, 1531, 1887, 2030, 2110 |
| PleI | GAGTC | 4 cut(s) | 203, 851, 2127, 2260 |
| PpsI | GAGTC | 4 cut(s) | 203, 851, 2127, 2260 |
| Ppu21I | YACGTR | 1 cut(s) | 896 |
| PpuMI | RGGWCCY | 1 cut(s) | 1865 |
| PscI | ACATGT | 1 cut(s) | 2262 |
| PsiI | TTATAA | 2 cut(s) | 468, 1751 |
| Psp5II | RGGWCCY | 1 cut(s) | 1865 |
| Psp6I | CCWGG | 2 cut(s) | 1173, 1617 |
| PspGI | CCWGG | 2 cut(s) | 1173, 1617 |
| PspN4I | GGNNCC | 3 cut(s) | 1304, 1564, 1654 |
| PspPI | GGNCC | 4 cut(s) | 1562, 1841, 1865, 2092 |
| PspPPI | RGGWCCY | 1 cut(s) | 1865 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2365, 2397 |
| PsuI | RGATCY | 3 cut(s) | 1111, 1284, 2570 |
| RsaI | GTAC | 3 cut(s) | 749, 789, 2327 |
| RsaNI | GTAC | 3 cut(s) | 748, 788, 2326 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2333 |
| SacII | CCGCGG | 1 cut(s) | 166 |
| SatI | GCNGC | 5 cut(s) | 1394, 1530, 1886, 2029, 2109 |
| Sau3AI | GATC | 6 cut(s) | 310, 1111, 1284, 1438, 1537, 2570 |
| Sau96I | GGNCC | 4 cut(s) | 1562, 1841, 1865, 2092 |
| SchI | GAGTC | 4 cut(s) | 204, 852, 2127, 2261 |
| ScrFI | CCNGG | 5 cut(s) | 352, 500, 733, 1175, 1619 |
| SduI | GDGCHC | 2 cut(s) | 1432, 2467 |
| SfaNI | GCATC | 4 cut(s) | 1039, 1867, 1967, 2035 |
| SfcI | CTRYAG | 1 cut(s) | 1316 |
| Sfr274I | CTCGAG | 1 cut(s) | 2249 |
| Sfr303I | CCGCGG | 1 cut(s) | 166 |
| SfuI | TTCGAA | 1 cut(s) | 2406 |
| SgrBI | CCGCGG | 1 cut(s) | 166 |
| SinI | GGWCC | 3 cut(s) | 1562, 1841, 1865 |
| SlaI | CTCGAG | 1 cut(s) | 2249 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2333 |
| SmlI | CTYRAG | 6 cut(s) | 1025, 1189, 1235, 2240, 2249, 2438 |
| SmoI | CTYRAG | 6 cut(s) | 1025, 1189, 1235, 2240, 2249, 2438 |
| SpeI | ACTAGT | 1 cut(s) | 770 |
| SsiI | CCGC | 9 cut(s) | 163, 165, 221, 1102, 1367, 1856, 1888, 2028, 2109 |
| SspMI | CTAG | 6 cut(s) | 771, 948, 998, 1473, 2258, 2303 |
| StyD4I | CCNGG | 5 cut(s) | 350, 498, 731, 1173, 1617 |
| StyI | CCWWGG | 2 cut(s) | 1357, 1706 |
| TaaI | ACNGT | 6 cut(s) | 179, 275, 569, 1127, 1199, 1320 |
| TaiI | ACGT | 5 cut(s) | 309, 598, 898, 1775, 2337 |
| TaqI | TCGA | 7 cut(s) | 212, 954, 1671, 2019, 2136, 2250, 2406 |
| TatI | WGTACW | 1 cut(s) | 787 |
| TauI | GCSGC | 2 cut(s) | 2031, 2111 |
| TseFI | GTSAC | 3 cut(s) | 179, 1199, 2253 |
| TseI | GCWGC | 3 cut(s) | 1393, 1529, 1885 |
| Tsp45I | GTSAC | 3 cut(s) | 179, 1199, 2253 |
| TspDTI | ATGAA | 9 cut(s) | 77, 281, 522, 813, 1146, 1289, 1374, 1988, 2604 |
| TspGWI | ACGGA | 3 cut(s) | 290, 1678, 1767 |
| VneI | GTGCAC | 1 cut(s) | 2463 |
| VpaK11BI | GGWCC | 3 cut(s) | 1562, 1841, 1865 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 946 |
| XapI | RAATTY | 4 cut(s) | 82, 644, 1381, 1801 |
| XceI | RCATGY | 1 cut(s) | 2266 |
| XhoI | CTCGAG | 1 cut(s) | 2249 |
| XmiI | GTMKAC | 2 cut(s) | 2001, 2071 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2015 |
| XspI | CTAG | 6 cut(s) | 771, 948, 998, 1473, 2258, 2303 |