Rroxscaffold_2G00094080

Leucine rich repeat N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000024
Physical Location & Seq
Reverse (-)
15418246 .. 15424037
5792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00094080.1

Sequence Viewer

Length: 2832 bp
ATGTTCGATCCATCCTTCCGAGGCGATGGGAGCGGTGCAGCGATCAGGTCTTGGGTGGCATCTGTACTGTGGCCAGTGGCATGGGTGGCGGCGAGTGTTGTAGGGTTGATGGGGCCGAGAGGTTCCTTCTCCGAGGAAGGGCGGTGGAGCGGCGGTCGAACCCGAGATCAGAGATGGTTTGGGTGTCAAGGGTACTTTTGGGTGCCAAAAAGTGGGCCTAGGCCCTTGCTTTGTTGGACTGCTCATACTTTGGTTTCTAGTTTAACATCCCACCTCATGGTAGATGATCTGTTCTCTGTCTATAAAAGAGTCACACTTTGCCACGATGATGAGCGCTCTGCCTTGTTGCAATTCAAAGCTAGTTTCACTATAGACAAGTCTGCTTCCCAAGATCCCCTTGCTTATGCGAAAGTTGCATCTTGGGGTAGGGTAGAAGGAGATCTTCAAGGGAGTAACTGTTGTTCATGGGATGGTGTTGAATGCAACCACCACTCTGGCCATGTTATTGGCCTTGACCTCGCCAGCAGCTATCTTCATGGTTCCATCAACTCCAATAGCAGTCTTTTTCAACTTGTTCAGTTGCAGAGGCTTGACCTCTCCGACAATAACTTCAGCTACTCTCAAATTCCATCCAGGTTAGGTCATGATCTTACTAGTCTAACATATCTCAACCTATCAATGTCTTCATTTTCTGGCCAAATTCCATTAGAAATTTCATATCTATCCAAGCTGTCTGCCCTTGATCTGTCTTCTAGTGACTGGCATCTTCTCAAAATGGCCAACTTCGGAAGCCTAGTTCAAAACTTGACCAACATAAAACAACTTCTTCTTAGTTGGGTAGAGATAGGGTCCGCAGTGCCTAATACATTGGTGAATGCGTCTTCTCTCACATCTCTCCGTCTTGGAGGATGTAACTTGGAGGGGCAATTCCCAGAAGGCATTTTCCACCTACCAAACTTGCAAGTACTTGATTTGGCCTATAACGATGATCTAACCGGTTATTTTCCTGATGAGCTTAACAAGAGCAGTCCCTTGAAGATACTGAATTTGTGGTCAACCAATTTCTCTGGTCATCTACCTGCATCAATCGGAAACCTTCGTGCCTTAAATTTGTTGAACATAGCATCCTGTCAGTTTTATCCCCATGTTCCATCTTCACTTTCCAACCTTACCCAGCTCAATTTCCTTGATCTTTCCTATTTTTCCAACGAGGACACTTCCAGTGGCCAAGTTACTGATTCCTGGTCTTGGGTTGGAAAGCTGACCAGACTCAACAATTTGTCGCTTGTCCATACCAACTTAAGGGGAGATTTCCCATGTTCTTTGGCTAATCTGACGCAACTTGTGGAATTATACTTGAGCTTCAATCAAATAACTGGTGAAATCCCATCTTCTTTGGCTAATCTGACTCAACTTGTGGAATTAGACTTGAGCTCCAATCAAATAACTGGTGAAATCCCATCTTCTTTGGCTAATATGACGCAACTTGTGGAATTAGACTTGAGCTACAATCAAATAACTGGTGAAATCCCCTCTTGCCTTGGGCAGTTGACCCATTTAACTTTATTAGACGCAAGATTCAACAATCTGCAAGGAACGATTCCCAGGTCACTATTCGGGCTTAGAAATCTTGAATATATATACCTCGAATCAAATAACTTGAGTGGGTATGTTGAATTCGATGAGTTTTCCAAGCTAGAAAAGTTGAGGGTACTTCGTTTGTCGCTCAACAAGTTATCTGTGCAGATCAAAACTGGATTTACTGCTATTCCTCCAAAGCTTCAAGTACTAGGATTGGGTTCATGCAACTTAGCAGAGTTTCCGGAATTTTTGAAATACACTAGCGAACTGACGGATCTAGATGTAGCTGAGAACAGTCTTCACGGCCAAATACCAAAATGGATGTGGAATTCAGCTAGTGCAAATTTGTTGCATCTCAACCTCTCTCACAACCACTTAACTGGATTTGAAGAAAATCCAGTCATCATTCCATGGCCTCGGTTATACTCTTTAGAGCTCGACTCTAACATGTTACGAGGATCACTGCCAATTCCAGGGCTGACGTTACAAGCGATTGACTTGAGTTATAATCAGCTACAAGGGAAGCTACCAAGATCAATTGCCAATTGTTCTGAGTTGGTGTTTCTTAATTTGGGAAATAATCAGATCAGTGATACCTTCCCATCTTGGTTAGGAACACTTCAACTATTAAGAGTTCTCATTTTGCGGTCTAACTCATTTCATGGCATAATTGGAAAGCCTGCAAGTAGCCATGAGTTCCCTGAGCTGTCCATTCTTGATTTATCTAGCAATGATTTTTCAGGTATGTTGCCCTCCGACTACTTAGAGAACTGGAATGCCATGAAATCTGTTGATGAAAACAAGCAAATGTACGTCCATACTGCTGCTTTAGTCGGGAAGTATCAAGCGATTATCGACTATGAATACTCAATTACGGTTTTTAGCAAAGGTGTTGAATTGAAGTATGTCAAGACCCCTTATCTTCTGAGGCTCATAGACCTCTCGAGTAACAGATTTGAAGGAGAGATTCCAGCCGACCCGACCCGAGTTTTTGGCCTCCTCCGCACCGACCCGCCCCTCCGGATTCGCACAGCCCCGCCCAAGCTCCCCGTGGTGTTGCCTTGCCCCGCCGCCGCCCGCGAGCCGGATCGAAGGCGCTCCGGGCTCCGTCCGATCGGACCCGCCGGAAAACGACTTTTCCGCGATGCACGGCCGATCGTTTCCATTTTCGTGATCTCCTCCTCTCGTCGATCATCCCCATACCCTTCTTGCTTGACGATTTTGAGTGTGGAGCAAAAGATCAAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

943

Amino Acids

104.65

Weight (kDa)

5.99

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 108 - 162 3.9e-08 Leucine rich repeat N-terminal domain
LRR_14 PF23598 186 - 327 4.9e-07 Leucine-rich repeat region
LRR_14 PF23598 319 - 480 7.2e-16 Leucine-rich repeat region
LRR_8 PF13855 423 - 482 2.9e-07 Leucine rich repeat
LRR_4 PF12799 446 - 483 2.9e-07 Leucine Rich repeats (2 copies)
LRR_14 PF23598 465 - 674 6.2e-12 Leucine-rich repeat region
LRR_8 PF13855 527 - 579 7.3e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000024)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45616 AT1G47890 AT2G25440 AT2G32660 AT2G32660 AT2G32680 AT2G33020 AT2G33030 AT2G33050 AT2G33060 AT2G33080 AT3G24900 AT3G24900 AT3G24982 AT3G25010 AT3G25010 AT3G25020 AT4G13810 AT4G13810 AT4G13810 AT4G13820 AT4G13880 AT4G13920 AT5G40170
fragaria_vesca FvH4_2g05950 FvH4_3g24110 FvH4_5g04000 FvH4_6g04890 FvH4_6g31760 FvH4_6g40760 FvH4_6g40800 FvH4_6g40820 FvH4_6g40840 FvH4_6g40842 FvH4_6g40843 FvH4_6g40847 FvH4_7g06093 FvH4_7g10111 FvH4_7g10112 FvH4_7g10113 FvH4_7g10114 FvH4_7g10130 FvH4_7g10150 FvH4_7g31280
malus_domestica MD00G1164200.v1.1 MD00G1164300.v1.1 MD01G1109000.v1.1 MD01G1109100.v1.1 MD07G1068900.v1.1 MD07G1069000.v1.1 MD07G1069300.v1.1 MD07G1069600.v1.1 MD07G1106700.v1.1 MD07G1106900.v1.1 MD07G1107200.v1.1 MD07G1107300.v1.1 MD07G1107400.v1.1 MD07G1107800.v1.1 MD09G1124300.v1.1 MD09G1124700.v1.1 MD09G1124800.v1.1 MD09G1124900.v1.1 MD09G1125100.v1.1 MD09G1125300.v1.1 MD09G1125400.v1.1 MD09G1125500.v1.1 MD09G1125600.v1.1 MD09G1130600.v1.1 MD09G1130900.v1.1 MD09G1131100.v1.1 MD17G1115000.v1.1 MD17G1115100.v1.1 MD17G1115300.v1.1 MD17G1115500.v1.1
prunus_persica Prupe.2G128400_v2.0.a1 Prupe.2G128600_v2.0.a1 Prupe.2G128700_v2.0.a1 Prupe.2G130100_v2.0.a1 Prupe.2G130300_v2.0.a1 Prupe.2G130400_v2.0.a1 Prupe.2G130500_v2.0.a1 Prupe.2G130600_v2.0.a1 Prupe.2G130700_v2.0.a1 Prupe.2G130900_v2.0.a1 Prupe.2G131000_v2.0.a1 Prupe.3G094800_v2.0.a1 Prupe.3G094900_v2.0.a1 Prupe.3G195900_v2.0.a1 Prupe.3G196000_v2.0.a1 Prupe.3G196000_v2.0.a1 Prupe.3G199200_v2.0.a1 Prupe.3G199200_v2.0.a1 Prupe.3G199400_v2.0.a1 Prupe.3G199500_v2.0.a1 Prupe.3G199900_v2.0.a1 Prupe.3G200000_v2.0.a1 Prupe.4G168900_v2.0.a1 Prupe.4G232400_v2.0.a1 Prupe.4G233100_v2.0.a1 Prupe.4G233100_v2.0.a1 Prupe.4G233200_v2.0.a1 Prupe.4G233600_v2.0.a1 Prupe.4G234000_v2.0.a1 Prupe.4G234200_v2.0.a1 Prupe.4G279000_v2.0.a1 Prupe.4G279000_v2.0.a1
pyrus_communis pycom01g13640 pycom05g05290 pycom05g05300 pycom05g05310 pycom05g05320 pycom07g05310 pycom07g05920 pycom07g09130 pycom07g09160 pycom07g09190 pycom07g09210 pycom09g04810 pycom09g04820 pycom09g04850 pycom09g04860 pycom09g04870 pycom09g04930 pycom09g04940 pycom09g04960 pycom09g04980 pycom11g17040 pycom11g17080 pycom11g17100 pycom17g10620 pycom17g10640 pycom17g10650 pycom17g10660
rosa_chinensis RchiOBHm_Chr1g0340311 RchiOBHm_Chr1g0340341 RchiOBHm_Chr1g0340351 RchiOBHm_Chr1g0340361 RchiOBHm_Chr1g0340411 RchiOBHm_Chr1g0340481 RchiOBHm_Chr1g0340521 RchiOBHm_Chr1g0340591 RchiOBHm_Chr1g0340631 RchiOBHm_Chr1g0340681 RchiOBHm_Chr1g0344431 RchiOBHm_Chr1g0346361 RchiOBHm_Chr1g0347011 RchiOBHm_Chr1g0347021 RchiOBHm_Chr1g0347031 RchiOBHm_Chr1g0347041 RchiOBHm_Chr1g0347561 RchiOBHm_Chr1g0347571 RchiOBHm_Chr1g0347811 RchiOBHm_Chr1g0347841 RchiOBHm_Chr1g0347861 RchiOBHm_Chr1g0348951 RchiOBHm_Chr1g0357511 RchiOBHm_Chr1g0367531 RchiOBHm_Chr1g0368411 RchiOBHm_Chr2g0154781 RchiOBHm_Chr2g0154841 RchiOBHm_Chr2g0155021 RchiOBHm_Chr2g0155091 RchiOBHm_Chr2g0155101 RchiOBHm_Chr2g0156211 RchiOBHm_Chr2g0156251 RchiOBHm_Chr2g0156281 RchiOBHm_Chr2g0156371 RchiOBHm_Chr2g0156381 RchiOBHm_Chr2g0156411 RchiOBHm_Chr2g0173751 RchiOBHm_Chr3g0494931 RchiOBHm_Chr4g0385161 RchiOBHm_Chr4g0385171 RchiOBHm_Chr4g0408231 RchiOBHm_Chr4g0408241 RchiOBHm_Chr5g0005251 RchiOBHm_Chr5g0030911 RchiOBHm_Chr5g0042831 RchiOBHm_Chr5g0042871 RchiOBHm_Chr5g0042881 RchiOBHm_Chr5g0043081 RchiOBHm_Chr5g0043131 RchiOBHm_Chr5g0043361 RchiOBHm_Chr5g0043371 RchiOBHm_Chr5g0043381 RchiOBHm_Chr5g0083391 RchiOBHm_Chr5g0083401 RchiOBHm_Chr5g0083441 RchiOBHm_Chr5g0083451 RchiOBHm_Chr5g0083461 RchiOBHm_Chr5g0083471 RchiOBHm_Chr5g0083501 RchiOBHm_Chr5g0083531 RchiOBHm_Chr5g0083601 RchiOBHm_Chr5g0083611 RchiOBHm_Chr5g0083651 RchiOBHm_Chr6g0257441 RchiOBHm_Chr6g0257601 RchiOBHm_Chr6g0257621 RchiOBHm_Chr6g0257631 RchiOBHm_Chr6g0263371 RchiOBHm_Chr6g0263391 RchiOBHm_Chr6g0263401 RchiOBHm_Chr6g0263411
rosa_laevigata RLG00000003361 RLG00000008615 RLG00000010252 RLG00000014349 RLG00000014351 RLG00000014359 RLG00000014696 RLG00000014706 RLG00000014711 RLG00000014712 RLG00000018865 RLG00000020803 RLG00000020804 RLG00000020808 RLG00000020811 RLG00000020812 RLG00000020816 RLG00000020817 RLG00000020818 RLG00000020896 RLG00000020902 RLG00000020904 RLG00000020905 RLG00000020906 RLG00000020907 RLG00000020908 RLG00000020909 RLG00000020910 RLG00000022216 RLG00000022218 RLG00000027211 RLG00000027212 RLG00000027213 RLG00000027214 RLG00000028474 RLG00000028475 RLG00000028613 RLG00000028708 RLG00000028709 RLG00000028737 RLG00000028738 RLG00000028764 RLG00000029010 RLG00000029012 RLG00000029019 RLG00000029022 RLG00000029025 RLG00000029027 RLG00000029031 RLG00000029035 RLG00000029141 RLG00000030130 RLG00000033005 RLG00000033271 RLG00000034150 RLG00000034153 RLG00000034158 RLG00000034160 RLG00000034164 RLG00000034166 RLG00000034167 RLG00000034183 RLG00000037034 RLG00000037035
rosa_multiflora Rmu_co8046282.1_g000001 Rmu_co8137732.1_g000001 Rmu_co8267491.1_g000001 Rmu_co8329695.1_g000001 Rmu_co8330005.1_g000001 Rmu_co8351095.1_g000001 Rmu_co8357797.1_g000001 Rmu_co8424479.1_g000001 Rmu_co8425575.1_g000001 Rmu_co8485497.1_g000001 Rmu_sc0000060.1_g000020 Rmu_sc0000260.1_g000009 Rmu_sc0000565.1_g000006 Rmu_sc0000566.1_g000023 Rmu_sc0000566.1_g000025 Rmu_sc0000566.1_g000031 Rmu_sc0000566.1_g000033 Rmu_sc0000566.1_g000036 Rmu_sc0000566.1_g000045 Rmu_sc0000566.1_g000048 Rmu_sc0000698.1_g000009 Rmu_sc0000698.1_g000031 Rmu_sc0000820.1_g000049 Rmu_sc0001099.1_g000008 Rmu_sc0001167.1_g000009 Rmu_sc0001167.1_g000070 Rmu_sc0001205.1_g000014 Rmu_sc0001444.1_g000008 Rmu_sc0001836.1_g000017 Rmu_sc0001836.1_g000021 Rmu_sc0001836.1_g000065 Rmu_sc0001974.1_g000014 Rmu_sc0002048.1_g000006 Rmu_sc0002048.1_g000018 Rmu_sc0002048.1_g000034 Rmu_sc0002079.1_g000008 Rmu_sc0002079.1_g000012 Rmu_sc0002079.1_g000034 Rmu_sc0002161.1_g000018 Rmu_sc0002245.1_g000018 Rmu_sc0002245.1_g000040 Rmu_sc0002538.1_g000004 Rmu_sc0002595.1_g000003 Rmu_sc0002595.1_g000004 Rmu_sc0002709.1_g000027 Rmu_sc0002709.1_g000043 Rmu_sc0003086.1_g000004 Rmu_sc0003188.1_g000002 Rmu_sc0003188.1_g000003 Rmu_sc0003301.1_g000003 Rmu_sc0003522.1_g000040 Rmu_sc0003785.1_g000004 Rmu_sc0003918.1_g000002 Rmu_sc0003918.1_g000015 Rmu_sc0004325.1_g000017 Rmu_sc0004355.1_g000007 Rmu_sc0004976.1_g000006 Rmu_sc0004976.1_g000010 Rmu_sc0004976.1_g000024 Rmu_sc0005144.1_g000016 Rmu_sc0005167.1_g000002 Rmu_sc0005451.1_g000002 Rmu_sc0006217.1_g000004 Rmu_sc0006908.1_g000027 Rmu_sc0008148.1_g000016 Rmu_sc0008148.1_g000044 Rmu_sc0008148.1_g000047 Rmu_sc0008734.1_g000012 Rmu_sc0008734.1_g000017 Rmu_sc0010137.1_g000014 Rmu_sc0010308.1_g000003 Rmu_sc0010719.1_g000001 Rmu_sc0014922.1_g000001 Rmu_sc0020148.1_g000001 Rmu_sc0024761.1_g000002 Rmu_sc0024761.1_g000003 Rmu_sc0027638.1_g000002 Rmu_sc0030439.1_g000001 Rmu_sc0033559.1_g000001 Rmu_sc0036789.1_g000001 Rmu_ssc0000173.1_g000015 Rmu_ssc0000245.1_g000025 Rmu_ssc0000342.1_g000001
rosa_roxburghii Rroxscaffold_1G00000980 Rroxscaffold_1G00000990 Rroxscaffold_1G00001050 Rroxscaffold_1G00001070 Rroxscaffold_1G00037490 Rroxscaffold_1G00037600 Rroxscaffold_1G00037640 Rroxscaffold_1G00037680 Rroxscaffold_1G00037700 Rroxscaffold_1G00037720 Rroxscaffold_1G00037780 Rroxscaffold_1G00037810 Rroxscaffold_2G00078660 Rroxscaffold_2G00093050 Rroxscaffold_2G00093070 Rroxscaffold_2G00093120 Rroxscaffold_2G00093140 Rroxscaffold_2G00093950 Rroxscaffold_2G00093980 Rroxscaffold_2G00093990 Rroxscaffold_2G00094050 Rroxscaffold_2G00094080 Rroxscaffold_2G00125300 Rroxscaffold_3G00218210 Rroxscaffold_4G00288530 Rroxscaffold_4G00288580 Rroxscaffold_4G00306260 Rroxscaffold_4G00306350 Rroxscaffold_4G00306420 Rroxscaffold_4G00307420 Rroxscaffold_4G00307660 Rroxscaffold_4G00307690 Rroxscaffold_4G00307720 Rroxscaffold_4G00311180 Rroxscaffold_4G00311220 Rroxscaffold_4G00311240 Rroxscaffold_4G00315940 Rroxscaffold_4G00315950 Rroxscaffold_5G00333080 Rroxscaffold_7G00208670 Rroxscaffold_7G00208690 Rroxscaffold_7G00208700 Rroxscaffold_7G00208710 Rroxscaffold_7G00208830 Rroxscaffold_7G00208840 Rroxscaffold_7G00208860
rosa_rugosa Rorug01G0052800 Rorug01G0052900 Rorug01G0084800 Rorug01G0162300.1 Rorug01G0162600.1 Rorug01G0162700.1 Rorug01G0163100.1 Rorug01G0163300.1 Rorug01G0163800.1 Rorug01G0163900.1 Rorug01G0164200.1 Rorug01G0164400.1 Rorug01G0187700 Rorug01G0187800 Rorug01G0189400 Rorug01G0189500 Rorug01G0189600 Rorug01G0189800 Rorug01G0190200 Rorug01G0190300 Rorug01G0198800 Rorug01G0341700 Rorug02G0445100 Rorug02G0445300 Rorug02G0445400 Rorug02G0452600 Rorug02G0452700 Rorug02G0452800 Rorug02G0453000 Rorug02G0522500 Rorug02G0572500 Rorug05G0203900 Rorug05G0204100 Rorug05G0204200 Rorug05G0204400 Rorug05G0205500 Rorug05G0205600 Rorug05G0484800 Rorug05G0484800 Rorug05G0484900 Rorug05G0570000 Rorug05G0570100 Rorug05G0570200 Rorug05G0570300.1 Rorug05G0570800 Rorug05G0570900 Rorug05G0572200 Rorug05G0572500
rosa_samantha Rh1AG178100 Rh1AG178500 Rh1AG178800 Rh1AG206800 Rh1AG207200 Rh1AG207700 Rh1AG348900 Rh2AG316000 Rh2BG522100 Rh2BG522400 Rh2BG530500 Rh2BG531000 Rh3AG317700 Rh4CG003500 Rh5AG289600 Rh5BG293800 Rh5BG294000 Rh5BG295500 Rh5BG296000 Rh5BG296300 Rh5BG297800 Rh5DG303900 Rh5DG305200 Rh5DG305500 Rh6AG126500
rosa_wichuraiana Rw0G002430 Rw0G013640 Rw1G014810 Rw1G014830 Rw1G014860 Rw1G014870 Rw1G014910 Rw1G017200 Rw1G017210 Rw1G017300 Rw1G017610 Rw1G017670 Rw1G017710 Rw1G017730 Rw1G018330 Rw1G018440 Rw1G031010 Rw1G031040 Rw1G031060 Rw2G042020 Rw2G042760 Rw2G042790 Rw2G042800 Rw2G053460 Rw2G053470 Rw4G000600 Rw5G019620 Rw5G027010 Rw5G049870 Rw5G050460 Rw5G050530 Rw6G007730 Rw6G007740 Rw6G007770 Rw6G007860 Rw6G010660 Rw6G010800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2088
Acc36I ACCTGC 1 cut(s) 1087
AccB1I GGYRCC 1 cut(s) 202
AccB7I CCANNNNNTGG 2 cut(s) 212, 277
AccBSI CCGCTC 2 cut(s) 33, 150
AccII CGCG 2 cut(s) 2661, 2724
AccIII TCCGGA 2 cut(s) 1822, 2601
AclWI GGATC 5 cut(s) 2, 386, 1863, 2047, 2676
AcoI YGGCCR 7 cut(s) 71, 496, 694, 777, 1225, 1885, 2732
AcsI RAATTY 9 cut(s) 624, 699, 711, 1045, 1108, 1676, 1826, 1909, 1924
AcuI CTGAAG 1 cut(s) 595
AfaI GTAC 6 cut(s) 66, 194, 966, 1713, 1788, 2393
AfeI AGCGCT 1 cut(s) 335
AfiI CCNNNNNNNGG 7 cut(s) 138, 212, 277, 1248, 1302, 2054, 2665
AflII CTTAAG 1 cut(s) 1300
AflIII ACRYGT 1 cut(s) 2028
AgeI ACCGGT 1 cut(s) 995
AhlI ACTAGT 1 cut(s) 653
AjnI CCWGG 4 cut(s) 632, 1241, 1604, 2053
AloI GAACNNNNNNTCC 4 cut(s) 780, 812, 1109, 1141
Alw21I GWGCWC 2 cut(s) 1436, 2019
AlwI GGATC 5 cut(s) 2, 386, 1863, 2047, 2676
Ama87I CYCGRG 3 cut(s) 162, 2524, 2565
Aor13HI TCCGGA 2 cut(s) 1822, 2601
Aor51HI AGCGCT 1 cut(s) 335
ApeKI GCWGC 3 cut(s) 38, 525, 2405
ApoI RAATTY 9 cut(s) 624, 699, 711, 1045, 1108, 1676, 1826, 1909, 1924
AsiGI ACCGGT 1 cut(s) 995
AspA2I CCTAGG 1 cut(s) 218
AspLEI GCGC 2 cut(s) 336, 2679
AspS9I GGNCC 5 cut(s) 113, 215, 222, 849, 2699
AsuC2I CCSGG 1 cut(s) 2683
AsuHPI GGTGA 4 cut(s) 883, 1391, 1463, 1535
AvaI CYCGRG 3 cut(s) 162, 2524, 2565
AvaII GGWCC 2 cut(s) 849, 2699
AvrII CCTAGG 1 cut(s) 218
BalI TGGCCA 5 cut(s) 73, 498, 696, 779, 1227
BanI GGYRCC 1 cut(s) 202
BanII GRGCYC 3 cut(s) 1436, 2019, 2688
BbsI GAAGAC 4 cut(s) 675, 741, 873, 1871
Bbv12I GWGCWC 2 cut(s) 1436, 2019
BbvI GCAGC 3 cut(s) 50, 537, 2392
BceAI ACGGC 2 cut(s) 1900, 2747
BciT130I CCWGG 4 cut(s) 634, 1243, 1606, 2055
BcnI CCSGG 1 cut(s) 2683
BcuI ACTAGT 1 cut(s) 653
BfmI CTRYAG 1 cut(s) 369
BfoI RGCGCY 2 cut(s) 337, 2680
BfrI CTTAAG 1 cut(s) 1300
BfuAI ACCTGC 1 cut(s) 1087
BglII AGATCT 1 cut(s) 439
BisI GCNGC 7 cut(s) 39, 90, 151, 526, 2406, 2652, 2655
BlnI CCTAGG 1 cut(s) 218
BlsI GCNGC 7 cut(s) 40, 91, 152, 527, 2407, 2653, 2656
BmcAI AGTACT 2 cut(s) 966, 1788
Bme1390I CCNGG 5 cut(s) 634, 1243, 1606, 2055, 2683
Bme18I GGWCC 2 cut(s) 849, 2699
BmeT110I CYCGRG 3 cut(s) 162, 2524, 2565
BmgT120I GGNCC 5 cut(s) 113, 215, 222, 849, 2699
BmiI GGNNCC 7 cut(s) 114, 124, 204, 541, 850, 2687, 2701
BmrFI CCNGG 5 cut(s) 634, 1243, 1606, 2055, 2683
BmsI GCATC 7 cut(s) 68, 425, 772, 1091, 1133, 1942, 2716
BpiI GAAGAC 4 cut(s) 675, 741, 873, 1871
BplI GAGNNNNNCTC 2 cut(s) 2006, 2038
Bpu10I CCTNAGC 1 cut(s) 2283
BpuEI CTTGAG 5 cut(s) 1378, 1450, 1522, 1681, 2101
BpuMI CCSGG 1 cut(s) 2683
BsaJI CCNNGG 9 cut(s) 19, 132, 218, 1540, 1604, 1991, 1997, 2054, 2631
BsaWI WCCGGW 3 cut(s) 995, 1822, 2601
BsaXI ACNNNNNCTCC 6 cut(s) 139, 169, 442, 472, 1418, 1448
Bsc4I CCNNNNNNNGG 7 cut(s) 138, 212, 277, 1248, 1302, 2054, 2665
Bse118I RCCGGY 1 cut(s) 995
Bse3DI GCAATG 1 cut(s) 2317
BseAI TCCGGA 2 cut(s) 1822, 2601
BseBI CCWGG 4 cut(s) 634, 1243, 1606, 2055
BseDI CCNNGG 9 cut(s) 19, 132, 218, 1540, 1604, 1991, 1997, 2054, 2631
BseGI GGATG 8 cut(s) 11, 266, 475, 629, 914, 1124, 1908, 2774
BseLI CCNNNNNNNGG 7 cut(s) 138, 212, 277, 1248, 1302, 2054, 2665
BseMI GCAATG 1 cut(s) 2317
BseMII CTCAG 4 cut(s) 1860, 2124, 2274, 2498
BseRI GAGGAG 3 cut(s) 2570, 2749, 2752
BseX3I CGGCCG 1 cut(s) 2732
BseXI GCAGC 3 cut(s) 50, 537, 2392
BseYI CCCAGC 1 cut(s) 1173
BsgI GTGCAG 2 cut(s) 57, 1763
Bsh1236I CGCG 2 cut(s) 2661, 2724
Bsh1285I CGRYCG 4 cut(s) 157, 2697, 2735, 2739
BshNI GGYRCC 1 cut(s) 202
BshTI ACCGGT 1 cut(s) 995
BsiEI CGRYCG 4 cut(s) 157, 2697, 2735, 2739
BsiHKAI GWGCWC 2 cut(s) 1436, 2019
BsiHKCI CYCGRG 3 cut(s) 162, 2524, 2565
BsiSI CCGG 6 cut(s) 996, 1823, 2602, 2666, 2682, 2706
BslFI GGGAC 1 cut(s) 1014
BslI CCNNNNNNNGG 7 cut(s) 138, 212, 277, 1248, 1302, 2054, 2665
BsmFI GGGAC 1 cut(s) 1014
BsmI GAATGC 3 cut(s) 485, 880, 2362
BsoBI CYCGRG 3 cut(s) 162, 2524, 2565
Bsp1286I GDGCHC 3 cut(s) 1436, 2019, 2688
Bsp13I TCCGGA 2 cut(s) 1822, 2601
Bsp19I CCATGG 1 cut(s) 1991
BspCNI CTCAG 4 cut(s) 1861, 2125, 2275, 2499
BspEI TCCGGA 2 cut(s) 1822, 2601
BspFNI CGCG 2 cut(s) 2661, 2724
BspHI TCATGA 1 cut(s) 643
BspLI GGNNCC 7 cut(s) 114, 124, 204, 541, 850, 2687, 2701
BspMI ACCTGC 1 cut(s) 1087
BspPI GGATC 5 cut(s) 2, 386, 1863, 2047, 2676
BspT107I GGYRCC 1 cut(s) 202
BspTI CTTAAG 1 cut(s) 1300
BsrBI CCGCTC 2 cut(s) 33, 150
BsrDI GCAATG 1 cut(s) 2317
BsrFI RCCGGY 1 cut(s) 995
BssAI RCCGGY 1 cut(s) 995
BssECI CCNNGG 9 cut(s) 19, 132, 218, 1540, 1604, 1991, 1997, 2054, 2631
BssT1I CCWWGG 3 cut(s) 218, 1540, 1991
Bst2UI CCWGG 4 cut(s) 634, 1243, 1606, 2055
Bst4CI ACNGT 4 cut(s) 69, 458, 1877, 2458
BstAFI CTTAAG 1 cut(s) 1300
BstC8I GCNNGC 4 cut(s) 523, 2262, 2659, 2663
BstDEI CTNAG 8 cut(s) 830, 1622, 1810, 1869, 2133, 2283, 2344, 2507
BstDSI CCRYGG 2 cut(s) 1991, 2631
BstF5I GGATG 8 cut(s) 11, 266, 475, 629, 914, 1124, 1908, 2774
BstFNI CGCG 2 cut(s) 2661, 2724
BstH2I RGCGCY 2 cut(s) 337, 2680
BstHHI GCGC 2 cut(s) 336, 2679
BstMCI CGRYCG 4 cut(s) 157, 2697, 2735, 2739
BstMWI GCNNNNNNNGC 5 cut(s) 30, 86, 413, 2583, 2683
BstNI CCWGG 4 cut(s) 634, 1243, 1606, 2055
BstNSI RCATGY 1 cut(s) 2032
BstSCI CCNGG 5 cut(s) 632, 1241, 1604, 2053, 2681
BstSFI CTRYAG 1 cut(s) 369
BstUI CGCG 2 cut(s) 2661, 2724
BstV1I GCAGC 3 cut(s) 50, 537, 2392
BstV2I GAAGAC 4 cut(s) 675, 741, 873, 1871
BstX2I RGATCY 3 cut(s) 391, 439, 1855
BstXI CCANNNNNNTGG 4 cut(s) 81, 494, 506, 1961
BstYI RGATCY 3 cut(s) 391, 439, 1855
BstZI CGGCCG 1 cut(s) 2732
BtgI CCRYGG 2 cut(s) 1991, 2631
BtgZI GCGATG 2 cut(s) 39, 2739
BtsCI GGATG 8 cut(s) 11, 266, 475, 629, 914, 1124, 1908, 2774
BtsI GCAGTG 2 cut(s) 861, 2042
BtsIMutI CAGTG 5 cut(s) 81, 861, 1228, 2042, 2176
BveI ACCTGC 1 cut(s) 1087
Cac8I GCNNGC 4 cut(s) 523, 2262, 2659, 2663
CciI TCATGA 1 cut(s) 643
CfoI GCGC 2 cut(s) 336, 2679
Cfr10I RCCGGY 1 cut(s) 995
Cfr13I GGNCC 5 cut(s) 113, 215, 222, 849, 2699
CseI GACGC 4 cut(s) 867, 1345, 1489, 1580
Csp6I GTAC 6 cut(s) 65, 193, 965, 1712, 1787, 2392
CspAI ACCGGT 1 cut(s) 995
CviQI GTAC 6 cut(s) 65, 193, 965, 1712, 1787, 2392
DdeI CTNAG 8 cut(s) 830, 1622, 1810, 1869, 2133, 2283, 2344, 2507
EaeI YGGCCR 7 cut(s) 71, 496, 694, 777, 1225, 1885, 2732
EagI CGGCCG 1 cut(s) 2732
Ecl136II GAGCTC 2 cut(s) 1434, 2017
EclXI CGGCCG 1 cut(s) 2732
Eco130I CCWWGG 3 cut(s) 218, 1540, 1991
Eco24I GRGCYC 3 cut(s) 1436, 2019, 2688
Eco47I GGWCC 2 cut(s) 849, 2699
Eco47III AGCGCT 1 cut(s) 335
Eco52I CGGCCG 1 cut(s) 2732
Eco53kI GAGCTC 2 cut(s) 1434, 2017
Eco57I CTGAAG 1 cut(s) 595
Eco88I CYCGRG 3 cut(s) 162, 2524, 2565
EcoICRI GAGCTC 2 cut(s) 1434, 2017
EcoO109I RGGNCCY 1 cut(s) 222
EcoRI GAATTC 2 cut(s) 1676, 1909
EcoRII CCWGG 4 cut(s) 632, 1241, 1604, 2053
EcoT14I CCWWGG 3 cut(s) 218, 1540, 1991
EcoT38I GRGCYC 3 cut(s) 1436, 2019, 2688
ErhI CCWWGG 3 cut(s) 218, 1540, 1991
FalI AAGNNNNNCTT 4 cut(s) 381, 413, 426, 458
FaqI GGGAC 1 cut(s) 1014
FauI CCCGC 5 cut(s) 2601, 2625, 2656, 2666, 2710
Fnu4HI GCNGC 7 cut(s) 39, 90, 151, 526, 2406, 2652, 2655
FokI GGATG 7 cut(s) 253, 482, 616, 921, 1111, 1915, 2761
FriOI GRGCYC 3 cut(s) 1436, 2019, 2688
Fsp4HI GCNGC 7 cut(s) 39, 90, 151, 526, 2406, 2652, 2655
GlaI GCGC 2 cut(s) 335, 2678
GluI GCNGC 7 cut(s) 39, 90, 151, 526, 2406, 2652, 2655
GsaI CCCAGC 1 cut(s) 1177
HaeII RGCGCY 2 cut(s) 337, 2680
HapII CCGG 6 cut(s) 996, 1823, 2602, 2666, 2682, 2706
HgaI GACGC 4 cut(s) 867, 1345, 1489, 1580
HhaI GCGC 2 cut(s) 336, 2679
Hin6I GCGC 2 cut(s) 334, 2677
HinP1I GCGC 2 cut(s) 334, 2677
HincII GTYRAC 2 cut(s) 1056, 1551
HindII GTYRAC 2 cut(s) 1056, 1551
HindIII AAGCTT 1 cut(s) 1778
HpaII CCGG 6 cut(s) 996, 1823, 2602, 2666, 2682, 2706
HphI GGTGA 4 cut(s) 883, 1391, 1463, 1535
Hpy166II GTNNAC 2 cut(s) 1056, 1551
Hpy8I GTNNAC 2 cut(s) 1056, 1551
Hpy99I CGWCG 1 cut(s) 2772
HpyCH4III ACNGT 4 cut(s) 69, 458, 1877, 2458
HpyCH4IV ACGT 2 cut(s) 2063, 2394
HpyF10VI GCNNNNNNNGC 5 cut(s) 30, 86, 413, 2583, 2683
HpyF3I CTNAG 8 cut(s) 830, 1622, 1810, 1869, 2133, 2283, 2344, 2507
HpySE526I ACGT 2 cut(s) 2063, 2394
HspAI GCGC 2 cut(s) 334, 2677
Kpn2I TCCGGA 2 cut(s) 1822, 2601
LmnI GCTCC 7 cut(s) 30, 147, 1439, 2631, 2684, 2691, 2812
Lsp1109I GCAGC 3 cut(s) 50, 537, 2392
LweI GCATC 7 cut(s) 68, 425, 772, 1091, 1133, 1942, 2716
MaeII ACGT 2 cut(s) 2063, 2394
MaeIII GTNAC 9 cut(s) 310, 452, 755, 911, 1231, 1608, 2031, 2064, 2528
MbiI CCGCTC 2 cut(s) 33, 150
MfeI CAATTG 2 cut(s) 2118, 2125
MflI RGATCY 3 cut(s) 391, 439, 1855
MhlI GDGCHC 3 cut(s) 1436, 2019, 2688
MlsI TGGCCA 5 cut(s) 73, 498, 696, 779, 1227
MluNI TGGCCA 5 cut(s) 73, 498, 696, 779, 1227
MlyI GAGTC 4 cut(s) 318, 1263, 1402, 2015
MmeI TCCRAC 6 cut(s) 215, 624, 1188, 1230, 1234, 2361
Mox20I TGGCCA 5 cut(s) 73, 498, 696, 779, 1227
MroI TCCGGA 2 cut(s) 1822, 2601
MscI TGGCCA 5 cut(s) 73, 498, 696, 779, 1227
MseI TTAA 8 cut(s) 263, 1017, 1106, 1301, 1559, 1958, 2148, 2210
MslI CAYNNNNRTG 2 cut(s) 327, 2750
Msp20I TGGCCA 5 cut(s) 73, 498, 696, 779, 1227
MspCI CTTAAG 1 cut(s) 1300
MspI CCGG 6 cut(s) 996, 1823, 2602, 2666, 2682, 2706
MspR9I CCNGG 5 cut(s) 634, 1243, 1606, 2055, 2683
MunI CAATTG 2 cut(s) 2118, 2125
Mva1269I GAATGC 3 cut(s) 485, 880, 2362
MvaI CCWGG 4 cut(s) 634, 1243, 1606, 2055
MvnI CGCG 2 cut(s) 2661, 2724
MwoI GCNNNNNNNGC 5 cut(s) 30, 86, 413, 2583, 2683
NciI CCSGG 1 cut(s) 2683
NcoI CCATGG 1 cut(s) 1991
NlaIV GGNNCC 7 cut(s) 114, 124, 204, 541, 850, 2687, 2701
NmeAIII GCCGAG 1 cut(s) 141
NmuCI GTSAC 3 cut(s) 310, 755, 1608
NspI RCATGY 1 cut(s) 2032
PaeR7I CTCGAG 1 cut(s) 2524
PagI TCATGA 1 cut(s) 643
PciI ACATGT 1 cut(s) 2028
PcsI WCGNNNNNNNCGW 1 cut(s) 2069
PctI GAATGC 3 cut(s) 485, 880, 2362
PfeI GAWTC 6 cut(s) 1238, 1578, 1600, 1649, 2548, 2605
PflMI CCANNNNNTGG 2 cut(s) 212, 277
PinAI ACCGGT 1 cut(s) 995
PkrI GCNGC 7 cut(s) 40, 91, 152, 527, 2407, 2653, 2656
Ple19I CGATCG 2 cut(s) 2697, 2739
PleI GAGTC 4 cut(s) 317, 1263, 1402, 2015
PpsI GAGTC 4 cut(s) 317, 1263, 1402, 2015
PscI ACATGT 1 cut(s) 2028
PsiI TTATAA 1 cut(s) 2088
Psp124BI GAGCTC 2 cut(s) 1436, 2019
Psp6I CCWGG 4 cut(s) 632, 1241, 1604, 2053
PspFI CCCAGC 1 cut(s) 1173
PspGI CCWGG 4 cut(s) 632, 1241, 1604, 2053
PspN4I GGNNCC 7 cut(s) 114, 124, 204, 541, 850, 2687, 2701
PspPI GGNCC 5 cut(s) 113, 215, 222, 849, 2699
PsrI GAACNNNNNNTAC 2 cut(s) 445, 477
PsuI RGATCY 3 cut(s) 391, 439, 1855
PvuI CGATCG 2 cut(s) 2697, 2739
RsaI GTAC 6 cut(s) 66, 194, 966, 1713, 1788, 2393
RsaNI GTAC 6 cut(s) 65, 193, 965, 1712, 1787, 2392
RseI CAYNNNNRTG 2 cut(s) 327, 2750
SacI GAGCTC 2 cut(s) 1436, 2019
SaqAI TTAA 8 cut(s) 263, 1017, 1106, 1301, 1559, 1958, 2148, 2210
SatI GCNGC 7 cut(s) 39, 90, 151, 526, 2406, 2652, 2655
Sau96I GGNCC 5 cut(s) 113, 215, 222, 849, 2699
ScaI AGTACT 2 cut(s) 966, 1788
SchI GAGTC 4 cut(s) 318, 1263, 1402, 2015
ScrFI CCNGG 5 cut(s) 634, 1243, 1606, 2055, 2683
SduI GDGCHC 3 cut(s) 1436, 2019, 2688
SfaNI GCATC 7 cut(s) 68, 425, 772, 1091, 1133, 1942, 2716
SfcI CTRYAG 1 cut(s) 369
Sfr274I CTCGAG 1 cut(s) 2524
SinI GGWCC 2 cut(s) 849, 2699
SlaI CTCGAG 1 cut(s) 2524
SmiMI CAYNNNNRTG 2 cut(s) 327, 2750
SmlI CTYRAG 7 cut(s) 1300, 1357, 1429, 1501, 1660, 2080, 2524
SmoI CTYRAG 7 cut(s) 1300, 1357, 1429, 1501, 1660, 2080, 2524
SpeI ACTAGT 1 cut(s) 653
SstI GAGCTC 2 cut(s) 1436, 2019
StyD4I CCNGG 5 cut(s) 632, 1241, 1604, 2053, 2681
StyI CCWWGG 3 cut(s) 218, 1540, 1991
TaaI ACNGT 4 cut(s) 69, 458, 1877, 2458
TaiI ACGT 2 cut(s) 2066, 2397
TaqI TCGA 9 cut(s) 6, 157, 1647, 1680, 2019, 2436, 2525, 2671, 2770
TatI WGTACW 3 cut(s) 64, 964, 1786
TauI GCSGC 4 cut(s) 92, 153, 2654, 2657
TfiI GAWTC 6 cut(s) 1238, 1578, 1600, 1649, 2548, 2605
Tru1I TTAA 8 cut(s) 263, 1017, 1106, 1301, 1559, 1958, 2148, 2210
Tru9I TTAA 8 cut(s) 263, 1017, 1106, 1301, 1559, 1958, 2148, 2210
TscAI CASTG 5 cut(s) 81, 861, 1228, 2049, 2176
TseFI GTSAC 3 cut(s) 310, 755, 1608
TseI GCWGC 3 cut(s) 38, 525, 2405
Tsp45I GTSAC 3 cut(s) 310, 755, 1608
TspDTI ATGAA 9 cut(s) 453, 524, 675, 705, 1791, 2231, 2378, 2391, 2457
TspGWI ACGGA 3 cut(s) 887, 1868, 2678
TspRI CASTG 5 cut(s) 81, 861, 1228, 2049, 2176
Van91I CCANNNNNTGG 2 cut(s) 212, 277
Vha464I CTTAAG 1 cut(s) 1300
VpaK11BI GGWCC 2 cut(s) 849, 2699
XapI RAATTY 9 cut(s) 624, 699, 711, 1045, 1108, 1676, 1826, 1909, 1924
XbaI TCTAGA 1 cut(s) 1858
XceI RCATGY 1 cut(s) 2032
XcmI CCANNNNNNNNNTGG 2 cut(s) 1902, 2629
XhoI CTCGAG 1 cut(s) 2524
XmaJI CCTAGG 1 cut(s) 218
ZrmI AGTACT 2 cut(s) 966, 1788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.