MD17G1115300.v1.1

receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000024
Physical Location & Seq
Reverse (-)
9847115 .. 9850355
3241 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1115300.v1.1.491

Sequence Viewer

Length: 1935 bp
ATGTATTTTCCTGGCAAAAGTTCTTTCGCAACAACAAACCAATCTCTGGTATCCGAATCCTTGTCTTGGCTTGGAAAACTAACCAAACTTTATCACTTGGGCCTTTCGCATACCAACCTAAGGGGAAAATTCCCATGTTTTGTGTCCAACCTGACCAACATTCAATATCTAGATTTGGGCGGTAATGAAATAACTGGTCAAATCCCATCTTGGGTTACAATGAATTTGACCCAGTTAACTGTTCTAGATCTTTCCTTTAATAACTTGAGGGGATCAGTTGAGTTTGATCAATTTTCCAACCTCAAGAAGTTAGAGGATCTTCGGTTATCAGACAACGAGTTATCTCTACGGATCAAATCCAATTTGAGTGCTACTCTTCCTATGTTCCAAATTCTGTGGCTGTCTCGGTGCAACTTAACAGTGTTTCCTGAATTTTTAAGTAATCAAAAGGAATTGTACGACCTACACCTTTCTGATAACAACATGCATGGCCAAATACCAAAATGGTTCTGGAATGCAACTACAGATACGTTGTTGAATGTTGACTTCTCTAGAAACTTGTTAACCGGTTTTGACCAAAATCCACTCATTCTTCCATGGAAAAATATGTTGTATTTTGGTATATCGTCCAACAGGTTACAAGGATCACTGCCTCTGCCAGTTCCGCCACAATCAATCACAGCTTATGATGTCGCAAACAATGATTATAGTGGAGAAAGTTCACCTTTGTTTTGCTACTTGGATAATCTACAACTTCTTGACTTGTCCAACAACAACTTGAGTGGCATGCTTCCGCAATGTTTGGGGAACTCCTCTACATTGGAAATACTGTACCTAAGGAACAATTCTTTCCATGGCAATATTCCTCAAATGTGTGCAAACAAAAATAGTTTGAAAATGGTTGATTTAAGTTTCAATCAGTTGCAAGGAAAGCTGCCAAGAACAGTGGCCCATTGCACTCAGTTAGAGTTTCTCAATCTTGGAAACAATCGCATTAGCGACAGCTTCCCATCTTGGTTAGGGGCACTTCCAGTATTAAGGGCTCTCATTTTGCGGCATAATGGATTTCATGGCATAATTGGGAAGCCTGCAACCAACCACGAGTTCCCCAACTTGTGCATCATTGATCTATCTAACAATGATTTTTCCGGTATGTTGCCCTCAAATTACCTACAGAACTGGAATTTCATGAAATTTGTTAGTGAAACCAATCAAACTTATTTTAAAGTCTCTGCAACCGGCAACCCAGATAAAATCTGGTATGAGTATCCATACACCATCACGATTGTTGCAAAAGGTGTTGAGTTGAAATATTTGGAGACACCTTATCTTTTGAGACTCATTGATCTCTCAAGTAATAGATTTGAAGGTGAGATTCCGGCAGGTATAATTGGGAATCTAAGAGGCCTTCATTTTCTAAGCCTTTCCAACAACTCTCTCACGGGTCCCATCCCCTTATCTCTAGGGAACTTGACAGCTCTTGAATCATTGGATCTCTCTGAAAACCAGCTCTCAGGAAGGATCCCTAGCAATTTGGTACAACTCAATTTTCTTGCATATTTCAACGTATCCCACAACCGTCTTTGGGGGCCTATACCACTTGGTCAACAGTTTGATACATTCCTAGAAGATTCATACCAAGAAAACCCGGGTTTGTGTGGAAAGCCTTTGTCAAAGAAATGCAAGGATTCTGGGAGCACAAAGCTACCACCACCATCAATCTTTGAAGAAGGTGAAGATTCGGGATTTCGATTTGAGTTTGATTGGTACGTGGTTCTGCCCGGAGTCATTAGTGGACTAATAGTTGGAGTGATTTCTGGGAACACTTTGGCAAACAACAAGCATGAATGGTTTGTGGATACATTTAGCAGGAAGAGGCAGCCAAGAGGCACAAAGGGAAAGGGACGCCGGACTTGGTCATTATTTTATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

645

Amino Acids

72.57

Weight (kDa)

6.65

Isoelectric Point (pI)

33.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 16 - 160 7.2e-08 Leucine-rich repeat region
LRR_8 PF13855 29 - 89 4.5e-06 Leucine rich repeat
LRR_4 PF12799 52 - 93 6e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 297 - 355 8.9e-08 Leucine rich repeat
LRR_14 PF23598 439 - 525 6.4e-08 Leucine-rich repeat region
LRR_8 PF13855 445 - 504 1.5e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000024)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45616 AT1G47890 AT2G25440 AT2G32660 AT2G32660 AT2G32680 AT2G33020 AT2G33030 AT2G33050 AT2G33060 AT2G33080 AT3G24900 AT3G24900 AT3G24982 AT3G25010 AT3G25010 AT3G25020 AT4G13810 AT4G13810 AT4G13810 AT4G13820 AT4G13880 AT4G13920 AT5G40170
fragaria_vesca FvH4_2g05950 FvH4_3g24110 FvH4_5g04000 FvH4_6g04890 FvH4_6g31760 FvH4_6g40760 FvH4_6g40800 FvH4_6g40820 FvH4_6g40840 FvH4_6g40842 FvH4_6g40843 FvH4_6g40847 FvH4_7g06093 FvH4_7g10111 FvH4_7g10112 FvH4_7g10113 FvH4_7g10114 FvH4_7g10130 FvH4_7g10150 FvH4_7g31280
malus_domestica MD00G1164200.v1.1 MD00G1164300.v1.1 MD01G1109000.v1.1 MD01G1109100.v1.1 MD07G1068900.v1.1 MD07G1069000.v1.1 MD07G1069300.v1.1 MD07G1069600.v1.1 MD07G1106700.v1.1 MD07G1106900.v1.1 MD07G1107200.v1.1 MD07G1107300.v1.1 MD07G1107400.v1.1 MD07G1107800.v1.1 MD09G1124300.v1.1 MD09G1124700.v1.1 MD09G1124800.v1.1 MD09G1124900.v1.1 MD09G1125100.v1.1 MD09G1125300.v1.1 MD09G1125400.v1.1 MD09G1125500.v1.1 MD09G1125600.v1.1 MD09G1130600.v1.1 MD09G1130900.v1.1 MD09G1131100.v1.1 MD17G1115000.v1.1 MD17G1115100.v1.1 MD17G1115300.v1.1 MD17G1115500.v1.1
prunus_persica Prupe.2G128400_v2.0.a1 Prupe.2G128600_v2.0.a1 Prupe.2G128700_v2.0.a1 Prupe.2G130100_v2.0.a1 Prupe.2G130300_v2.0.a1 Prupe.2G130400_v2.0.a1 Prupe.2G130500_v2.0.a1 Prupe.2G130600_v2.0.a1 Prupe.2G130700_v2.0.a1 Prupe.2G130900_v2.0.a1 Prupe.2G131000_v2.0.a1 Prupe.3G094800_v2.0.a1 Prupe.3G094900_v2.0.a1 Prupe.3G195900_v2.0.a1 Prupe.3G196000_v2.0.a1 Prupe.3G196000_v2.0.a1 Prupe.3G199200_v2.0.a1 Prupe.3G199200_v2.0.a1 Prupe.3G199400_v2.0.a1 Prupe.3G199500_v2.0.a1 Prupe.3G199900_v2.0.a1 Prupe.3G200000_v2.0.a1 Prupe.4G168900_v2.0.a1 Prupe.4G232400_v2.0.a1 Prupe.4G233100_v2.0.a1 Prupe.4G233100_v2.0.a1 Prupe.4G233200_v2.0.a1 Prupe.4G233600_v2.0.a1 Prupe.4G234000_v2.0.a1 Prupe.4G234200_v2.0.a1 Prupe.4G279000_v2.0.a1 Prupe.4G279000_v2.0.a1
pyrus_communis pycom01g13640 pycom05g05290 pycom05g05300 pycom05g05310 pycom05g05320 pycom07g05310 pycom07g05920 pycom07g09130 pycom07g09160 pycom07g09190 pycom07g09210 pycom09g04810 pycom09g04820 pycom09g04850 pycom09g04860 pycom09g04870 pycom09g04930 pycom09g04940 pycom09g04960 pycom09g04980 pycom11g17040 pycom11g17080 pycom11g17100 pycom17g10620 pycom17g10640 pycom17g10650 pycom17g10660
rosa_chinensis RchiOBHm_Chr1g0340311 RchiOBHm_Chr1g0340341 RchiOBHm_Chr1g0340351 RchiOBHm_Chr1g0340361 RchiOBHm_Chr1g0340411 RchiOBHm_Chr1g0340481 RchiOBHm_Chr1g0340521 RchiOBHm_Chr1g0340591 RchiOBHm_Chr1g0340631 RchiOBHm_Chr1g0340681 RchiOBHm_Chr1g0344431 RchiOBHm_Chr1g0346361 RchiOBHm_Chr1g0347011 RchiOBHm_Chr1g0347021 RchiOBHm_Chr1g0347031 RchiOBHm_Chr1g0347041 RchiOBHm_Chr1g0347561 RchiOBHm_Chr1g0347571 RchiOBHm_Chr1g0347811 RchiOBHm_Chr1g0347841 RchiOBHm_Chr1g0347861 RchiOBHm_Chr1g0348951 RchiOBHm_Chr1g0357511 RchiOBHm_Chr1g0367531 RchiOBHm_Chr1g0368411 RchiOBHm_Chr2g0154781 RchiOBHm_Chr2g0154841 RchiOBHm_Chr2g0155021 RchiOBHm_Chr2g0155091 RchiOBHm_Chr2g0155101 RchiOBHm_Chr2g0156211 RchiOBHm_Chr2g0156251 RchiOBHm_Chr2g0156281 RchiOBHm_Chr2g0156371 RchiOBHm_Chr2g0156381 RchiOBHm_Chr2g0156411 RchiOBHm_Chr2g0173751 RchiOBHm_Chr3g0494931 RchiOBHm_Chr4g0385161 RchiOBHm_Chr4g0385171 RchiOBHm_Chr4g0408231 RchiOBHm_Chr4g0408241 RchiOBHm_Chr5g0005251 RchiOBHm_Chr5g0030911 RchiOBHm_Chr5g0042831 RchiOBHm_Chr5g0042871 RchiOBHm_Chr5g0042881 RchiOBHm_Chr5g0043081 RchiOBHm_Chr5g0043131 RchiOBHm_Chr5g0043361 RchiOBHm_Chr5g0043371 RchiOBHm_Chr5g0043381 RchiOBHm_Chr5g0083391 RchiOBHm_Chr5g0083401 RchiOBHm_Chr5g0083441 RchiOBHm_Chr5g0083451 RchiOBHm_Chr5g0083461 RchiOBHm_Chr5g0083471 RchiOBHm_Chr5g0083501 RchiOBHm_Chr5g0083531 RchiOBHm_Chr5g0083601 RchiOBHm_Chr5g0083611 RchiOBHm_Chr5g0083651 RchiOBHm_Chr6g0257441 RchiOBHm_Chr6g0257601 RchiOBHm_Chr6g0257621 RchiOBHm_Chr6g0257631 RchiOBHm_Chr6g0263371 RchiOBHm_Chr6g0263391 RchiOBHm_Chr6g0263401 RchiOBHm_Chr6g0263411
rosa_laevigata RLG00000003361 RLG00000008615 RLG00000010252 RLG00000014349 RLG00000014351 RLG00000014359 RLG00000014696 RLG00000014706 RLG00000014711 RLG00000014712 RLG00000018865 RLG00000020803 RLG00000020804 RLG00000020808 RLG00000020811 RLG00000020812 RLG00000020816 RLG00000020817 RLG00000020818 RLG00000020896 RLG00000020902 RLG00000020904 RLG00000020905 RLG00000020906 RLG00000020907 RLG00000020908 RLG00000020909 RLG00000020910 RLG00000022216 RLG00000022218 RLG00000027211 RLG00000027212 RLG00000027213 RLG00000027214 RLG00000028474 RLG00000028475 RLG00000028613 RLG00000028708 RLG00000028709 RLG00000028737 RLG00000028738 RLG00000028764 RLG00000029010 RLG00000029012 RLG00000029019 RLG00000029022 RLG00000029025 RLG00000029027 RLG00000029031 RLG00000029035 RLG00000029141 RLG00000030130 RLG00000033005 RLG00000033271 RLG00000034150 RLG00000034153 RLG00000034158 RLG00000034160 RLG00000034164 RLG00000034166 RLG00000034167 RLG00000034183 RLG00000037034 RLG00000037035
rosa_multiflora Rmu_co8046282.1_g000001 Rmu_co8137732.1_g000001 Rmu_co8267491.1_g000001 Rmu_co8329695.1_g000001 Rmu_co8330005.1_g000001 Rmu_co8351095.1_g000001 Rmu_co8357797.1_g000001 Rmu_co8424479.1_g000001 Rmu_co8425575.1_g000001 Rmu_co8485497.1_g000001 Rmu_sc0000060.1_g000020 Rmu_sc0000260.1_g000009 Rmu_sc0000565.1_g000006 Rmu_sc0000566.1_g000023 Rmu_sc0000566.1_g000025 Rmu_sc0000566.1_g000031 Rmu_sc0000566.1_g000033 Rmu_sc0000566.1_g000036 Rmu_sc0000566.1_g000045 Rmu_sc0000566.1_g000048 Rmu_sc0000698.1_g000009 Rmu_sc0000698.1_g000031 Rmu_sc0000820.1_g000049 Rmu_sc0001099.1_g000008 Rmu_sc0001167.1_g000009 Rmu_sc0001167.1_g000070 Rmu_sc0001205.1_g000014 Rmu_sc0001444.1_g000008 Rmu_sc0001836.1_g000017 Rmu_sc0001836.1_g000021 Rmu_sc0001836.1_g000065 Rmu_sc0001974.1_g000014 Rmu_sc0002048.1_g000006 Rmu_sc0002048.1_g000018 Rmu_sc0002048.1_g000034 Rmu_sc0002079.1_g000008 Rmu_sc0002079.1_g000012 Rmu_sc0002079.1_g000034 Rmu_sc0002161.1_g000018 Rmu_sc0002245.1_g000018 Rmu_sc0002245.1_g000040 Rmu_sc0002538.1_g000004 Rmu_sc0002595.1_g000003 Rmu_sc0002595.1_g000004 Rmu_sc0002709.1_g000027 Rmu_sc0002709.1_g000043 Rmu_sc0003086.1_g000004 Rmu_sc0003188.1_g000002 Rmu_sc0003188.1_g000003 Rmu_sc0003301.1_g000003 Rmu_sc0003522.1_g000040 Rmu_sc0003785.1_g000004 Rmu_sc0003918.1_g000002 Rmu_sc0003918.1_g000015 Rmu_sc0004325.1_g000017 Rmu_sc0004355.1_g000007 Rmu_sc0004976.1_g000006 Rmu_sc0004976.1_g000010 Rmu_sc0004976.1_g000024 Rmu_sc0005144.1_g000016 Rmu_sc0005167.1_g000002 Rmu_sc0005451.1_g000002 Rmu_sc0006217.1_g000004 Rmu_sc0006908.1_g000027 Rmu_sc0008148.1_g000016 Rmu_sc0008148.1_g000044 Rmu_sc0008148.1_g000047 Rmu_sc0008734.1_g000012 Rmu_sc0008734.1_g000017 Rmu_sc0010137.1_g000014 Rmu_sc0010308.1_g000003 Rmu_sc0010719.1_g000001 Rmu_sc0014922.1_g000001 Rmu_sc0020148.1_g000001 Rmu_sc0024761.1_g000002 Rmu_sc0024761.1_g000003 Rmu_sc0027638.1_g000002 Rmu_sc0030439.1_g000001 Rmu_sc0033559.1_g000001 Rmu_sc0036789.1_g000001 Rmu_ssc0000173.1_g000015 Rmu_ssc0000245.1_g000025 Rmu_ssc0000342.1_g000001
rosa_roxburghii Rroxscaffold_1G00000980 Rroxscaffold_1G00000990 Rroxscaffold_1G00001050 Rroxscaffold_1G00001070 Rroxscaffold_1G00037490 Rroxscaffold_1G00037600 Rroxscaffold_1G00037640 Rroxscaffold_1G00037680 Rroxscaffold_1G00037700 Rroxscaffold_1G00037720 Rroxscaffold_1G00037780 Rroxscaffold_1G00037810 Rroxscaffold_2G00078660 Rroxscaffold_2G00093050 Rroxscaffold_2G00093070 Rroxscaffold_2G00093120 Rroxscaffold_2G00093140 Rroxscaffold_2G00093950 Rroxscaffold_2G00093980 Rroxscaffold_2G00093990 Rroxscaffold_2G00094050 Rroxscaffold_2G00094080 Rroxscaffold_2G00125300 Rroxscaffold_3G00218210 Rroxscaffold_4G00288530 Rroxscaffold_4G00288580 Rroxscaffold_4G00306260 Rroxscaffold_4G00306350 Rroxscaffold_4G00306420 Rroxscaffold_4G00307420 Rroxscaffold_4G00307660 Rroxscaffold_4G00307690 Rroxscaffold_4G00307720 Rroxscaffold_4G00311180 Rroxscaffold_4G00311220 Rroxscaffold_4G00311240 Rroxscaffold_4G00315940 Rroxscaffold_4G00315950 Rroxscaffold_5G00333080 Rroxscaffold_7G00208670 Rroxscaffold_7G00208690 Rroxscaffold_7G00208700 Rroxscaffold_7G00208710 Rroxscaffold_7G00208830 Rroxscaffold_7G00208840 Rroxscaffold_7G00208860
rosa_rugosa Rorug01G0052800 Rorug01G0052900 Rorug01G0084800 Rorug01G0162300.1 Rorug01G0162600.1 Rorug01G0162700.1 Rorug01G0163100.1 Rorug01G0163300.1 Rorug01G0163800.1 Rorug01G0163900.1 Rorug01G0164200.1 Rorug01G0164400.1 Rorug01G0187700 Rorug01G0187800 Rorug01G0189400 Rorug01G0189500 Rorug01G0189600 Rorug01G0189800 Rorug01G0190200 Rorug01G0190300 Rorug01G0198800 Rorug01G0341700 Rorug02G0445100 Rorug02G0445300 Rorug02G0445400 Rorug02G0452600 Rorug02G0452700 Rorug02G0452800 Rorug02G0453000 Rorug02G0522500 Rorug02G0572500 Rorug05G0203900 Rorug05G0204100 Rorug05G0204200 Rorug05G0204400 Rorug05G0205500 Rorug05G0205600 Rorug05G0484800 Rorug05G0484800 Rorug05G0484900 Rorug05G0570000 Rorug05G0570100 Rorug05G0570200 Rorug05G0570300.1 Rorug05G0570800 Rorug05G0570900 Rorug05G0572200 Rorug05G0572500
rosa_samantha Rh1AG178100 Rh1AG178500 Rh1AG178800 Rh1AG206800 Rh1AG207200 Rh1AG207700 Rh1AG348900 Rh2AG316000 Rh2BG522100 Rh2BG522400 Rh2BG530500 Rh2BG531000 Rh3AG317700 Rh4CG003500 Rh5AG289600 Rh5BG293800 Rh5BG294000 Rh5BG295500 Rh5BG296000 Rh5BG296300 Rh5BG297800 Rh5DG303900 Rh5DG305200 Rh5DG305500 Rh6AG126500
rosa_wichuraiana Rw0G002430 Rw0G013640 Rw1G014810 Rw1G014830 Rw1G014860 Rw1G014870 Rw1G014910 Rw1G017200 Rw1G017210 Rw1G017300 Rw1G017610 Rw1G017670 Rw1G017710 Rw1G017730 Rw1G018330 Rw1G018440 Rw1G031010 Rw1G031040 Rw1G031060 Rw2G042020 Rw2G042760 Rw2G042790 Rw2G042800 Rw2G053460 Rw2G053470 Rw4G000600 Rw5G019620 Rw5G027010 Rw5G049870 Rw5G050460 Rw5G050530 Rw6G007730 Rw6G007740 Rw6G007770 Rw6G007860 Rw6G010660 Rw6G010800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1373
AccB7I CCANNNNNTGG 1 cut(s) 46
AciI CCGC 4 cut(s) 180, 665, 794, 1054
AclWI GGATC 7 cut(s) 280, 324, 359, 652, 1500, 1516, 1529
AcoI YGGCCR 1 cut(s) 490
AcsI RAATTY 6 cut(s) 128, 223, 390, 431, 1183, 1193
AcyI GRCGYC 1 cut(s) 1906
AfaI GTAC 4 cut(s) 458, 833, 1539, 1769
AfiI CCNNNNNNNGG 5 cut(s) 46, 66, 120, 211, 1585
AgeI ACCGGT 1 cut(s) 566
AgsI TTSAA 9 cut(s) 164, 538, 895, 916, 1309, 1367, 1484, 1564, 1727
AjnI CCWGG 1 cut(s) 10
AjuI GAANNNNNNNTTGG 2 cut(s) 1088, 1120
AluBI AGCT 6 cut(s) 683, 934, 1005, 1478, 1510, 1705
AluI AGCT 6 cut(s) 683, 934, 1005, 1478, 1510, 1705
Alw21I GWGCWC 1 cut(s) 1700
Alw26I GTCTC 4 cut(s) 408, 1234, 1313, 1330
AlwI GGATC 7 cut(s) 280, 324, 359, 652, 1500, 1516, 1529
Ama87I CYCGRG 1 cut(s) 1648
AoxI GGCC 5 cut(s) 100, 490, 948, 1405, 1589
ApeKI GCWGC 2 cut(s) 934, 1879
ApoI RAATTY 6 cut(s) 128, 223, 390, 431, 1183, 1193
AsiGI ACCGGT 1 cut(s) 566
AspS9I GGNCC 4 cut(s) 100, 949, 1445, 1589
AsuC2I CCSGG 3 cut(s) 1649, 1650, 1782
AsuHPI GGTGA 3 cut(s) 714, 1382, 1745
AvaI CYCGRG 1 cut(s) 1648
AvaII GGWCC 1 cut(s) 1445
AxyI CCTNAGG 2 cut(s) 119, 836
BaeGI GKGCMC 1 cut(s) 1027
BalI TGGCCA 1 cut(s) 492
BamHI GGATCC 1 cut(s) 1521
BanII GRGCYC 1 cut(s) 1045
BauI CACGAG 1 cut(s) 1100
Bbv12I GWGCWC 1 cut(s) 1700
BbvI GCAGC 2 cut(s) 921, 1891
BccI CCATC 5 cut(s) 214, 1018, 1286, 1457, 1723
BciT130I CCWGG 1 cut(s) 12
BciVI GTATCC 4 cut(s) 61, 1278, 1579, 1852
BclI TGATCA 1 cut(s) 286
BcnI CCSGG 3 cut(s) 1649, 1650, 1782
BcoDI GTCTC 4 cut(s) 408, 1234, 1313, 1330
BfaI CTAG 6 cut(s) 170, 245, 552, 1463, 1527, 1625
BfmI CTRYAG 2 cut(s) 522, 1172
BfuAI ACCTGC 1 cut(s) 1373
BfuI GTATCC 4 cut(s) 61, 1278, 1579, 1852
BglII AGATCT 1 cut(s) 247
BisI GCNGC 3 cut(s) 935, 1055, 1880
BlsI GCNGC 3 cut(s) 936, 1056, 1881
Bme1390I CCNGG 4 cut(s) 12, 1649, 1650, 1782
Bme18I GGWCC 1 cut(s) 1445
BmeT110I CYCGRG 1 cut(s) 1648
BmgT120I GGNCC 4 cut(s) 100, 949, 1445, 1589
BmiI GGNNCC 4 cut(s) 1446, 1447, 1523, 1590
BmrFI CCNGG 4 cut(s) 12, 1649, 1650, 1782
BmrI ACTGGG 1 cut(s) 226
BmsI GCATC 1 cut(s) 1128
BmuI ACTGGG 1 cut(s) 226
BplI GAGNNNNNCTC 2 cut(s) 358, 390
BpuEI CTTGAG 4 cut(s) 286, 287, 799, 1336
BpuMI CCSGG 3 cut(s) 1649, 1650, 1782
BsaAI YACGTR 1 cut(s) 1771
BsaHI GRCGYC 1 cut(s) 1906
BsaJI CCNNGG 3 cut(s) 596, 853, 1648
BsaWI WCCGGW 2 cut(s) 566, 1148
Bsc4I CCNNNNNNNGG 5 cut(s) 46, 66, 120, 211, 1585
Bse118I RCCGGY 2 cut(s) 566, 1238
Bse1I ACTGG 5 cut(s) 199, 232, 659, 1031, 1184
Bse21I CCTNAGG 2 cut(s) 119, 836
Bse3DI GCAATG 2 cut(s) 803, 952
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 3 cut(s) 596, 853, 1648
BseGI GGATG 1 cut(s) 1449
BseLI CCNNNNNNNGG 5 cut(s) 46, 66, 120, 211, 1585
BseMI GCAATG 2 cut(s) 803, 952
BseMII CTCAG 2 cut(s) 974, 1527
BseNI ACTGG 5 cut(s) 199, 232, 659, 1031, 1184
BseRI GAGGAG 1 cut(s) 802
BseSI GKGCMC 1 cut(s) 1027
BseXI GCAGC 2 cut(s) 921, 1891
BshFI GGCC 5 cut(s) 102, 492, 950, 1407, 1591
BshTI ACCGGT 1 cut(s) 566
BsiHKAI GWGCWC 1 cut(s) 1700
BsiHKCI CYCGRG 1 cut(s) 1648
BsiSI CCGG 7 cut(s) 567, 1149, 1239, 1379, 1649, 1782, 1909
BslFI GGGAC 2 cut(s) 1431, 1917
BslI CCNNNNNNNGG 5 cut(s) 46, 66, 120, 211, 1585
BsmAI GTCTC 4 cut(s) 408, 1234, 1313, 1330
BsmFI GGGAC 2 cut(s) 1431, 1917
BsmI GAATGC 1 cut(s) 520
BsnI GGCC 5 cut(s) 102, 492, 950, 1407, 1591
BsoBI CYCGRG 1 cut(s) 1648
Bsp1286I GDGCHC 3 cut(s) 1027, 1045, 1700
Bsp19I CCATGG 2 cut(s) 596, 853
BspACI CCGC 4 cut(s) 180, 665, 794, 1054
BspANI GGCC 5 cut(s) 102, 492, 950, 1407, 1591
BspCNI CTCAG 2 cut(s) 973, 1526
BspHI TCATGA 1 cut(s) 1188
BspLI GGNNCC 4 cut(s) 1446, 1447, 1523, 1590
BspMI ACCTGC 1 cut(s) 1373
BspPI GGATC 7 cut(s) 280, 324, 359, 652, 1500, 1516, 1529
BsrDI GCAATG 2 cut(s) 803, 952
BsrFI RCCGGY 2 cut(s) 566, 1238
BsrI ACTGG 5 cut(s) 199, 232, 659, 1031, 1184
BssAI RCCGGY 2 cut(s) 566, 1238
BssECI CCNNGG 3 cut(s) 596, 853, 1648
BssNI GRCGYC 1 cut(s) 1906
BssSI CACGAG 1 cut(s) 1100
BssT1I CCWWGG 2 cut(s) 596, 853
Bst2BI CACGAG 1 cut(s) 1100
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 6 cut(s) 241, 421, 831, 946, 1580, 1611
Bst6I CTCTTC 2 cut(s) 381, 1868
BstACI GRCGYC 1 cut(s) 1906
BstBAI YACGTR 1 cut(s) 1771
BstC8I GCNNGC 2 cut(s) 788, 1089
BstDEI CTNAG 6 cut(s) 119, 836, 960, 1400, 1418, 1513
BstDSI CCRYGG 2 cut(s) 596, 853
BstF5I GGATG 1 cut(s) 1449
BstMAI GTCTC 4 cut(s) 408, 1234, 1313, 1330
BstMWI GCNNNNNNNGC 2 cut(s) 664, 931
BstNI CCWGG 1 cut(s) 12
BstNSI RCATGY 2 cut(s) 487, 790
BstSCI CCNGG 4 cut(s) 10, 1647, 1648, 1780
BstSFI CTRYAG 2 cut(s) 522, 1172
BstSLI GKGCMC 1 cut(s) 1027
BstV1I GCAGC 2 cut(s) 921, 1891
BstX2I RGATCY 4 cut(s) 247, 316, 1492, 1521
BstYI RGATCY 4 cut(s) 247, 316, 1492, 1521
Bsu36I CCTNAGG 2 cut(s) 119, 836
BsuI GTATCC 4 cut(s) 61, 1278, 1579, 1852
BsuRI GGCC 5 cut(s) 102, 492, 950, 1407, 1591
BtgI CCRYGG 2 cut(s) 596, 853
BtsCI GGATG 1 cut(s) 1449
BtsI GCAGTG 1 cut(s) 647
BtsIMutI CAGTG 3 cut(s) 426, 647, 951
BveI ACCTGC 1 cut(s) 1373
Cac8I GCNNGC 2 cut(s) 788, 1089
CciI TCATGA 1 cut(s) 1188
Cfr10I RCCGGY 2 cut(s) 566, 1238
Cfr13I GGNCC 4 cut(s) 100, 949, 1445, 1589
Cfr9I CCCGGG 1 cut(s) 1648
CseI GACGC 1 cut(s) 1914
Csp6I GTAC 4 cut(s) 457, 832, 1538, 1768
CspAI ACCGGT 1 cut(s) 566
CspCI CAANNNNNGTGG 6 cut(s) 377, 412, 763, 798, 927, 962
CviQI GTAC 4 cut(s) 457, 832, 1538, 1768
DdeI CTNAG 6 cut(s) 119, 836, 960, 1400, 1418, 1513
DraI TTTAAA 1 cut(s) 1225
EaeI YGGCCR 1 cut(s) 490
Eam1104I CTCTTC 2 cut(s) 381, 1868
EarI CTCTTC 2 cut(s) 381, 1868
EciI GGCGGA 1 cut(s) 654
Eco130I CCWWGG 2 cut(s) 596, 853
Eco147I AGGCCT 1 cut(s) 1407
Eco24I GRGCYC 1 cut(s) 1045
Eco47I GGWCC 1 cut(s) 1445
Eco81I CCTNAGG 2 cut(s) 119, 836
Eco88I CYCGRG 1 cut(s) 1648
EcoO109I RGGNCCY 2 cut(s) 1445, 1589
EcoRII CCWGG 1 cut(s) 10
EcoT14I CCWWGG 2 cut(s) 596, 853
EcoT22I ATGCAT 1 cut(s) 489
EcoT38I GRGCYC 1 cut(s) 1045
ErhI CCWWGG 2 cut(s) 596, 853
FalI AAGNNNNNCTT 2 cut(s) 709, 741
FaqI GGGAC 2 cut(s) 1431, 1917
FbaI TGATCA 1 cut(s) 286
Fnu4HI GCNGC 3 cut(s) 935, 1055, 1880
FokI GGATG 1 cut(s) 1436
FriOI GRGCYC 1 cut(s) 1045
Fsp4HI GCNGC 3 cut(s) 935, 1055, 1880
FspBI CTAG 6 cut(s) 170, 245, 552, 1463, 1527, 1625
GluI GCNGC 3 cut(s) 935, 1055, 1880
HaeIII GGCC 5 cut(s) 102, 492, 950, 1407, 1591
HapII CCGG 7 cut(s) 567, 1149, 1239, 1379, 1649, 1782, 1909
HgaI GACGC 1 cut(s) 1914
Hin1I GRCGYC 1 cut(s) 1906
HincII GTYRAC 4 cut(s) 237, 544, 564, 1607
HindII GTYRAC 4 cut(s) 237, 544, 564, 1607
HinfI GANTC 9 cut(s) 56, 1338, 1375, 1396, 1484, 1631, 1688, 1739, 1785
HpaI GTTAAC 2 cut(s) 237, 564
HpaII CCGG 7 cut(s) 567, 1149, 1239, 1379, 1649, 1782, 1909
HphI GGTGA 3 cut(s) 714, 1382, 1745
Hpy166II GTNNAC 6 cut(s) 237, 544, 564, 722, 1607, 1796
Hpy188I TCNGA 4 cut(s) 55, 331, 475, 1501
Hpy8I GTNNAC 6 cut(s) 237, 544, 564, 722, 1607, 1796
HpyAV CCTTC 4 cut(s) 1361, 1418, 1512, 1724
HpyCH4III ACNGT 6 cut(s) 241, 421, 831, 946, 1580, 1611
HpyCH4IV ACGT 3 cut(s) 530, 1566, 1770
HpyF10VI GCNNNNNNNGC 2 cut(s) 664, 931
HpyF3I CTNAG 6 cut(s) 119, 836, 960, 1400, 1418, 1513
HpySE526I ACGT 3 cut(s) 530, 1566, 1770
Hsp92I GRCGYC 1 cut(s) 1906
KflI GGGWCCC 1 cut(s) 1445
Ksp22I TGATCA 1 cut(s) 286
KspAI GTTAAC 2 cut(s) 237, 564
LmnI GCTCC 1 cut(s) 1695
Lsp1109I GCAGC 2 cut(s) 921, 1891
LweI GCATC 1 cut(s) 1128
MaeI CTAG 6 cut(s) 170, 245, 552, 1463, 1527, 1625
MaeII ACGT 3 cut(s) 530, 1566, 1770
MaeIII GTNAC 2 cut(s) 214, 636
MboII GAAGA 7 cut(s) 311, 368, 584, 1640, 1739, 1748, 1885
MflI RGATCY 4 cut(s) 247, 316, 1492, 1521
MhlI GDGCHC 3 cut(s) 1027, 1045, 1700
MlsI TGGCCA 1 cut(s) 492
MluNI TGGCCA 1 cut(s) 492
MlyI GAGTC 2 cut(s) 1332, 1794
MmeI TCCRAC 6 cut(s) 171, 321, 654, 792, 1452, 1786
Mox20I TGGCCA 1 cut(s) 492
Mph1103I ATGCAT 1 cut(s) 489
MscI TGGCCA 1 cut(s) 492
MseI TTAA 8 cut(s) 236, 258, 416, 437, 563, 908, 1037, 1224
Msp20I TGGCCA 1 cut(s) 492
MspI CCGG 7 cut(s) 567, 1149, 1239, 1379, 1649, 1782, 1909
MspR9I CCNGG 4 cut(s) 12, 1649, 1650, 1782
Mva1269I GAATGC 1 cut(s) 520
MvaI CCWGG 1 cut(s) 12
MwoI GCNNNNNNNGC 2 cut(s) 664, 931
NciI CCSGG 3 cut(s) 1649, 1650, 1782
NcoI CCATGG 2 cut(s) 596, 853
NlaIV GGNNCC 4 cut(s) 1446, 1447, 1523, 1590
NsiI ATGCAT 1 cut(s) 489
NspI RCATGY 2 cut(s) 487, 790
PaeI GCATGC 1 cut(s) 790
PagI TCATGA 1 cut(s) 1188
PceI AGGCCT 1 cut(s) 1407
PctI GAATGC 1 cut(s) 520
PfeI GAWTC 7 cut(s) 56, 1375, 1396, 1484, 1631, 1688, 1739
PflFI GACNNNGTC 1 cut(s) 1915
PflMI CCANNNNNTGG 1 cut(s) 46
PinAI ACCGGT 1 cut(s) 566
PkrI GCNGC 3 cut(s) 936, 1056, 1881
PleI GAGTC 2 cut(s) 1332, 1793
PpsI GAGTC 2 cut(s) 1332, 1793
Ppu21I YACGTR 1 cut(s) 1771
PpuMI RGGWCCY 1 cut(s) 1445
Psp5II RGGWCCY 1 cut(s) 1445
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 4 cut(s) 1446, 1447, 1523, 1590
PspPI GGNCC 4 cut(s) 100, 949, 1445, 1589
PspPPI RGGWCCY 1 cut(s) 1445
PsuI RGATCY 4 cut(s) 247, 316, 1492, 1521
PsyI GACNNNGTC 1 cut(s) 1915
RsaI GTAC 4 cut(s) 458, 833, 1539, 1769
RsaNI GTAC 4 cut(s) 457, 832, 1538, 1768
SaqAI TTAA 8 cut(s) 236, 258, 416, 437, 563, 908, 1037, 1224
SatI GCNGC 3 cut(s) 935, 1055, 1880
Sau96I GGNCC 4 cut(s) 100, 949, 1445, 1589
SchI GAGTC 2 cut(s) 1332, 1794
ScrFI CCNGG 4 cut(s) 12, 1649, 1650, 1782
SduI GDGCHC 3 cut(s) 1027, 1045, 1700
SfaNI GCATC 1 cut(s) 1128
SfcI CTRYAG 2 cut(s) 522, 1172
SinI GGWCC 1 cut(s) 1445
SmaI CCCGGG 1 cut(s) 1650
SmlI CTYRAG 4 cut(s) 265, 302, 778, 1351
SmoI CTYRAG 4 cut(s) 265, 302, 778, 1351
SphI GCATGC 1 cut(s) 790
SseBI AGGCCT 1 cut(s) 1407
SsiI CCGC 4 cut(s) 180, 665, 794, 1054
SspI AATATT 2 cut(s) 862, 1313
SspMI CTAG 6 cut(s) 170, 245, 552, 1463, 1527, 1625
StuI AGGCCT 1 cut(s) 1407
StyD4I CCNGG 4 cut(s) 10, 1647, 1648, 1780
StyI CCWWGG 2 cut(s) 596, 853
TaaI ACNGT 6 cut(s) 241, 421, 831, 946, 1580, 1611
TaiI ACGT 3 cut(s) 533, 1569, 1773
TaqI TCGA 1 cut(s) 1750
TauI GCSGC 1 cut(s) 1057
TfiI GAWTC 7 cut(s) 56, 1375, 1396, 1484, 1631, 1688, 1739
Tru1I TTAA 8 cut(s) 236, 258, 416, 437, 563, 908, 1037, 1224
Tru9I TTAA 8 cut(s) 236, 258, 416, 437, 563, 908, 1037, 1224
TscAI CASTG 3 cut(s) 426, 654, 951
TseI GCWGC 2 cut(s) 934, 1879
TspDTI ATGAA 8 cut(s) 201, 236, 1058, 1177, 1205, 1400, 1623, 1860
TspGWI ACGGA 1 cut(s) 364
TspMI CCCGGG 1 cut(s) 1648
TspRI CASTG 3 cut(s) 426, 654, 951
Tth111I GACNNNGTC 1 cut(s) 1915
Van91I CCANNNNNTGG 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 1445
XapI RAATTY 6 cut(s) 128, 223, 390, 431, 1183, 1193
XbaI TCTAGA 3 cut(s) 169, 244, 551
XceI RCATGY 2 cut(s) 487, 790
XcmI CCANNNNNNNNNTGG 2 cut(s) 507, 1254
XmaI CCCGGG 1 cut(s) 1648
XspI CTAG 6 cut(s) 170, 245, 552, 1463, 1527, 1625
Zsp2I ATGCAT 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.