Rroxscaffold_7G00208670

Receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000024
Physical Location & Seq
Reverse (-)
58807796 .. 58811238
3443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00208670.1

Sequence Viewer

Length: 3126 bp
ATGCTTTATAGCAAAATTATCAAAATATCAATTATGGGGCTATCACTGAGCTTGTGGAATAGTCGCATGCTTTCGAAACGAGTAATTCTTTTCATGTTTCATTTCTTGGTTATTGCCAACTCTTTACACTCTCTGCAGCAGCCATCATCTTCCTGCCATGATGAGGAGAGCTTCGCCTTGCTCCAGTTTAAGAAAAGCTTTGTCGTCGACGAATTTGCTTCTGTTGATGAGGGTGCTTATCCAAAGGTTTTGTCATGGAAATCAGCTGCTGCTAAAGGATGCTGCTCATGGGACGGGGTCGAGTGTGATGAGAAGACAGGTCATGTGATTGGACTTGATCTTAGTAGTAGCTGTCTCTCCGGCTCTATCAGCTCCAACAACACCCTCTTCCGTCTTGTTCATCTTCAGAGGCTGAACCTTGCGGACAATAACTTCAATCAATCTCAAATTCCTACTACCATCAGGAATTTTCGAATGCTTAGTTATCTCAACCTCTCTGCCTCTTCCTTTTCTGGTCAAATCCCATCTGAAATTTCTCAATTGTCAAAGTTGTCGTCCCTTGATCTATCCTCCAATAGTGACAGTACCGGTGAAAGATCACTGAAGCTAAACCAGTCCAATCTAAAGAGGCTAGTTCAAAACTTGACGAGCCTAGAAAAGCTTCATCTCAGCTCCGTCGTCATTTCTGCACCAATACCCAATTCCATGGCAAATTTATCATTTTTGACATCTCTCCTCCTAGAGTATTGCGAGCTGCTAGGCGAATTTCCAGTAAGTATTTTAAAATTACAGAGTTTAAAATTTCTTAATGTAGAATCCAATCCAGATCTCACAGGTTTTTTGCCGGCATTTGAACAAACTAGTCCTCTCATGTCACTGAGAGTTTCCAGAACAAGGTTTTCAGGAGACCTCCCTTTTTCTATTGAAAAGCTTGATTCACTGAATGAGTTGGTTGCTAGTCGATGCAATTTTTCAGGGTTGCTTCCATCTTCACTCGGTAATCTTAGGCGGCTGGTTTATTTAGACTTTTCAAATAACACACTTACTGGCTCAATCCCTGCTTCTTTGGCAACCCTTACCCAACTGTCACATCTGTCACTTGATACTAATCATTTCAGTGGTTACATCCCGTCTTCTCTTGGAAATCTAACCCAGCTCACAACACTTTCGCTTGCATCAAATCAATTAACTGGTCCAATCCCATCTTCTCTAGGAAACCTCACCCAAGTCACTGAGTTAGACCTTTCTGGTAATGATTTCGGTGGTTACATCCCGTCTTCCATTGGAAATCTCAACCAGCTTGTAAGACTTTCACTTTCTATGAATCAATTAACTGGGCCAATCCCCTCTTCAGTAGGAAATCTTAGCAAACTAATTGAGTTAGATCTTTTTTCAAATAATTTGCACAGTTCCATTCCTGAGTCCTTATCCAATCTCACGAATCTCGTGACACTTTATCTAGATAGTAATAGTCTGAGCGGCAAAGTGAATTTCCACACGTTTCTGAAGCTGCAAAATCTCCTCATACTGTATTTATCTGGAAATAAATTGGAATTATTGCTTGAAGAGACAAGATTTATGAATGCAACAACAACTTTTCCAAAGTTTATAACCCTGGGATTGGGTTCTTGCAACATAACAGAGTTCCCAAGTTTCCTAAGATATCAAGAAAATTTGCGATGGCTGGATCTTGCTGAGAATGGAATGCATGGCCAAGTACCGAGATGGATGTGGAATGTAAGCAAAGAAAGTTTGACAGTCATGAACATTTCTCATAACTTCCTTTCTGGCTTTGACCATCCTCCAGTTGTTCTTTCGTGGAGCGGCATACAACTCTTGGATCTTTCATCCAACATGATTCAGGGATCACTACTGATACCTTCACCATCCATCGAGTACTATGTAATTTCAAACAACGGGCTAAGTGGACAAGTTTCACCTTTGATATGCAATCTGACTTCTCTGAAGTATCTTGATTTGTCAAATAACAAGTTGAGTGGCACGCTGCCGCAGTGTCTTGGGAATTTCAGTGATAACTTGCGAGTTTTAAATCTCAGAAACAACTCTTTTGAAGGCCACCTCCCGCAAGCATACACAAGCAATCTGACGATGATTGATGTTAGTAATAACAAACTGCAGGGGATATTACCAAGGTCTTTGGTGAATTGTGTGATGCTTGAGTTTCTTGTTATATCAAACAATGAATTCAATGATGTTTTCCCTCTTTGGTTGGGGACTCTCCCAGAATTGAGACTCTTGGCAATGCACCATAATGGGTTCCATGGGGTGATAAGGAAACCTGAAAAGAATCTAGATCATTTTCTTCAGTTGCACATTCTTGATCTATCTTTCAACAATTTCTCAGGCAACTTCCCCTTTGAATACATCTTCTCTGGAAATGCAATCAAAGGTATCACTTCGAATGAGTTCACATACATGAAGACAACCTCAGATGTTGTTTATGATCCTTCATATCGTGGCGGGTATATCTCCTTCACAATGACAAGTAAAGGTGTGGACCGATTCTATCCCAAGATTCGAGAGGACTTTGCAGCCATTGACATCTCAAGCAACAGATTTGAAGGGAAGGTTCCTGAATTCATTGGGAATCTCACGGGGCTTCGTTCGCTCAATATGTCCCATAACATTCTCACTGGTTTGATCCCCTCATCCTTGGGAAAATTAAAGTTGCTTGAATCATTGGACCTTTCACAGAACAAACTCTCAGGGGAGATCCCTCGACAACTGACACAAATTTCATTCCTTGCAAAATTCAATGTCTCTCACAACAATCTCAGTGGTCCTATTCCTCGTGGAACCCAATTTGCTACATTTGACAGTACTTCATATGAAGGAAACCTGGGGTTGTGTGGAGAACCGTTGCCAAAGAAATGTGGCAATGAAGCTCCTCAATTGCCACCTTCAACAGAAGAACAAAATGGTTCTGATTTTGGAAATGAATTGGATTGGAAATTTGTTCTGGCAGGATCTGTGAGTGGGTTGCTAGTTGGAGTGGTTCTTGCAGACGTCCTCGTCACAAGGAAGCGTGAGTGTTTTCTTAATATTGTGGGGATACTAATCAGACTATTGAAAAGGAAAAGTGTGAAGAGGACTCGGAGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

1041

Amino Acids

115.12

Weight (kDa)

6.88

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 53 - 103 4.6e-07 Leucine rich repeat N-terminal domain
LRR_14 PF23598 112 - 245 3.9e-09 Leucine-rich repeat region
LRR_14 PF23598 293 - 418 1.1e-11 Leucine-rich repeat region
LRR_8 PF13855 313 - 372 5.6e-06 Leucine rich repeat
LRR_14 PF23598 379 - 588 1.1e-11 Leucine-rich repeat region
LRR_8 PF13855 433 - 492 4.1e-06 Leucine rich repeat
LRR_8 PF13855 679 - 735 1e-06 Leucine rich repeat
LRR_8 PF13855 700 - 759 6.2e-06 Leucine rich repeat
LRR_8 PF13855 853 - 908 4.9e-08 Leucine rich repeat
LRR_8 PF13855 873 - 932 4.3e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000024)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45616 AT1G47890 AT2G25440 AT2G32660 AT2G32660 AT2G32680 AT2G33020 AT2G33030 AT2G33050 AT2G33060 AT2G33080 AT3G24900 AT3G24900 AT3G24982 AT3G25010 AT3G25010 AT3G25020 AT4G13810 AT4G13810 AT4G13810 AT4G13820 AT4G13880 AT4G13920 AT5G40170
fragaria_vesca FvH4_2g05950 FvH4_3g24110 FvH4_5g04000 FvH4_6g04890 FvH4_6g31760 FvH4_6g40760 FvH4_6g40800 FvH4_6g40820 FvH4_6g40840 FvH4_6g40842 FvH4_6g40843 FvH4_6g40847 FvH4_7g06093 FvH4_7g10111 FvH4_7g10112 FvH4_7g10113 FvH4_7g10114 FvH4_7g10130 FvH4_7g10150 FvH4_7g31280
malus_domestica MD00G1164200.v1.1 MD00G1164300.v1.1 MD01G1109000.v1.1 MD01G1109100.v1.1 MD07G1068900.v1.1 MD07G1069000.v1.1 MD07G1069300.v1.1 MD07G1069600.v1.1 MD07G1106700.v1.1 MD07G1106900.v1.1 MD07G1107200.v1.1 MD07G1107300.v1.1 MD07G1107400.v1.1 MD07G1107800.v1.1 MD09G1124300.v1.1 MD09G1124700.v1.1 MD09G1124800.v1.1 MD09G1124900.v1.1 MD09G1125100.v1.1 MD09G1125300.v1.1 MD09G1125400.v1.1 MD09G1125500.v1.1 MD09G1125600.v1.1 MD09G1130600.v1.1 MD09G1130900.v1.1 MD09G1131100.v1.1 MD17G1115000.v1.1 MD17G1115100.v1.1 MD17G1115300.v1.1 MD17G1115500.v1.1
prunus_persica Prupe.2G128400_v2.0.a1 Prupe.2G128600_v2.0.a1 Prupe.2G128700_v2.0.a1 Prupe.2G130100_v2.0.a1 Prupe.2G130300_v2.0.a1 Prupe.2G130400_v2.0.a1 Prupe.2G130500_v2.0.a1 Prupe.2G130600_v2.0.a1 Prupe.2G130700_v2.0.a1 Prupe.2G130900_v2.0.a1 Prupe.2G131000_v2.0.a1 Prupe.3G094800_v2.0.a1 Prupe.3G094900_v2.0.a1 Prupe.3G195900_v2.0.a1 Prupe.3G196000_v2.0.a1 Prupe.3G196000_v2.0.a1 Prupe.3G199200_v2.0.a1 Prupe.3G199200_v2.0.a1 Prupe.3G199400_v2.0.a1 Prupe.3G199500_v2.0.a1 Prupe.3G199900_v2.0.a1 Prupe.3G200000_v2.0.a1 Prupe.4G168900_v2.0.a1 Prupe.4G232400_v2.0.a1 Prupe.4G233100_v2.0.a1 Prupe.4G233100_v2.0.a1 Prupe.4G233200_v2.0.a1 Prupe.4G233600_v2.0.a1 Prupe.4G234000_v2.0.a1 Prupe.4G234200_v2.0.a1 Prupe.4G279000_v2.0.a1 Prupe.4G279000_v2.0.a1
pyrus_communis pycom01g13640 pycom05g05290 pycom05g05300 pycom05g05310 pycom05g05320 pycom07g05310 pycom07g05920 pycom07g09130 pycom07g09160 pycom07g09190 pycom07g09210 pycom09g04810 pycom09g04820 pycom09g04850 pycom09g04860 pycom09g04870 pycom09g04930 pycom09g04940 pycom09g04960 pycom09g04980 pycom11g17040 pycom11g17080 pycom11g17100 pycom17g10620 pycom17g10640 pycom17g10650 pycom17g10660
rosa_chinensis RchiOBHm_Chr1g0340311 RchiOBHm_Chr1g0340341 RchiOBHm_Chr1g0340351 RchiOBHm_Chr1g0340361 RchiOBHm_Chr1g0340411 RchiOBHm_Chr1g0340481 RchiOBHm_Chr1g0340521 RchiOBHm_Chr1g0340591 RchiOBHm_Chr1g0340631 RchiOBHm_Chr1g0340681 RchiOBHm_Chr1g0344431 RchiOBHm_Chr1g0346361 RchiOBHm_Chr1g0347011 RchiOBHm_Chr1g0347021 RchiOBHm_Chr1g0347031 RchiOBHm_Chr1g0347041 RchiOBHm_Chr1g0347561 RchiOBHm_Chr1g0347571 RchiOBHm_Chr1g0347811 RchiOBHm_Chr1g0347841 RchiOBHm_Chr1g0347861 RchiOBHm_Chr1g0348951 RchiOBHm_Chr1g0357511 RchiOBHm_Chr1g0367531 RchiOBHm_Chr1g0368411 RchiOBHm_Chr2g0154781 RchiOBHm_Chr2g0154841 RchiOBHm_Chr2g0155021 RchiOBHm_Chr2g0155091 RchiOBHm_Chr2g0155101 RchiOBHm_Chr2g0156211 RchiOBHm_Chr2g0156251 RchiOBHm_Chr2g0156281 RchiOBHm_Chr2g0156371 RchiOBHm_Chr2g0156381 RchiOBHm_Chr2g0156411 RchiOBHm_Chr2g0173751 RchiOBHm_Chr3g0494931 RchiOBHm_Chr4g0385161 RchiOBHm_Chr4g0385171 RchiOBHm_Chr4g0408231 RchiOBHm_Chr4g0408241 RchiOBHm_Chr5g0005251 RchiOBHm_Chr5g0030911 RchiOBHm_Chr5g0042831 RchiOBHm_Chr5g0042871 RchiOBHm_Chr5g0042881 RchiOBHm_Chr5g0043081 RchiOBHm_Chr5g0043131 RchiOBHm_Chr5g0043361 RchiOBHm_Chr5g0043371 RchiOBHm_Chr5g0043381 RchiOBHm_Chr5g0083391 RchiOBHm_Chr5g0083401 RchiOBHm_Chr5g0083441 RchiOBHm_Chr5g0083451 RchiOBHm_Chr5g0083461 RchiOBHm_Chr5g0083471 RchiOBHm_Chr5g0083501 RchiOBHm_Chr5g0083531 RchiOBHm_Chr5g0083601 RchiOBHm_Chr5g0083611 RchiOBHm_Chr5g0083651 RchiOBHm_Chr6g0257441 RchiOBHm_Chr6g0257601 RchiOBHm_Chr6g0257621 RchiOBHm_Chr6g0257631 RchiOBHm_Chr6g0263371 RchiOBHm_Chr6g0263391 RchiOBHm_Chr6g0263401 RchiOBHm_Chr6g0263411
rosa_laevigata RLG00000003361 RLG00000008615 RLG00000010252 RLG00000014349 RLG00000014351 RLG00000014359 RLG00000014696 RLG00000014706 RLG00000014711 RLG00000014712 RLG00000018865 RLG00000020803 RLG00000020804 RLG00000020808 RLG00000020811 RLG00000020812 RLG00000020816 RLG00000020817 RLG00000020818 RLG00000020896 RLG00000020902 RLG00000020904 RLG00000020905 RLG00000020906 RLG00000020907 RLG00000020908 RLG00000020909 RLG00000020910 RLG00000022216 RLG00000022218 RLG00000027211 RLG00000027212 RLG00000027213 RLG00000027214 RLG00000028474 RLG00000028475 RLG00000028613 RLG00000028708 RLG00000028709 RLG00000028737 RLG00000028738 RLG00000028764 RLG00000029010 RLG00000029012 RLG00000029019 RLG00000029022 RLG00000029025 RLG00000029027 RLG00000029031 RLG00000029035 RLG00000029141 RLG00000030130 RLG00000033005 RLG00000033271 RLG00000034150 RLG00000034153 RLG00000034158 RLG00000034160 RLG00000034164 RLG00000034166 RLG00000034167 RLG00000034183 RLG00000037034 RLG00000037035
rosa_multiflora Rmu_co8046282.1_g000001 Rmu_co8137732.1_g000001 Rmu_co8267491.1_g000001 Rmu_co8329695.1_g000001 Rmu_co8330005.1_g000001 Rmu_co8351095.1_g000001 Rmu_co8357797.1_g000001 Rmu_co8424479.1_g000001 Rmu_co8425575.1_g000001 Rmu_co8485497.1_g000001 Rmu_sc0000060.1_g000020 Rmu_sc0000260.1_g000009 Rmu_sc0000565.1_g000006 Rmu_sc0000566.1_g000023 Rmu_sc0000566.1_g000025 Rmu_sc0000566.1_g000031 Rmu_sc0000566.1_g000033 Rmu_sc0000566.1_g000036 Rmu_sc0000566.1_g000045 Rmu_sc0000566.1_g000048 Rmu_sc0000698.1_g000009 Rmu_sc0000698.1_g000031 Rmu_sc0000820.1_g000049 Rmu_sc0001099.1_g000008 Rmu_sc0001167.1_g000009 Rmu_sc0001167.1_g000070 Rmu_sc0001205.1_g000014 Rmu_sc0001444.1_g000008 Rmu_sc0001836.1_g000017 Rmu_sc0001836.1_g000021 Rmu_sc0001836.1_g000065 Rmu_sc0001974.1_g000014 Rmu_sc0002048.1_g000006 Rmu_sc0002048.1_g000018 Rmu_sc0002048.1_g000034 Rmu_sc0002079.1_g000008 Rmu_sc0002079.1_g000012 Rmu_sc0002079.1_g000034 Rmu_sc0002161.1_g000018 Rmu_sc0002245.1_g000018 Rmu_sc0002245.1_g000040 Rmu_sc0002538.1_g000004 Rmu_sc0002595.1_g000003 Rmu_sc0002595.1_g000004 Rmu_sc0002709.1_g000027 Rmu_sc0002709.1_g000043 Rmu_sc0003086.1_g000004 Rmu_sc0003188.1_g000002 Rmu_sc0003188.1_g000003 Rmu_sc0003301.1_g000003 Rmu_sc0003522.1_g000040 Rmu_sc0003785.1_g000004 Rmu_sc0003918.1_g000002 Rmu_sc0003918.1_g000015 Rmu_sc0004325.1_g000017 Rmu_sc0004355.1_g000007 Rmu_sc0004976.1_g000006 Rmu_sc0004976.1_g000010 Rmu_sc0004976.1_g000024 Rmu_sc0005144.1_g000016 Rmu_sc0005167.1_g000002 Rmu_sc0005451.1_g000002 Rmu_sc0006217.1_g000004 Rmu_sc0006908.1_g000027 Rmu_sc0008148.1_g000016 Rmu_sc0008148.1_g000044 Rmu_sc0008148.1_g000047 Rmu_sc0008734.1_g000012 Rmu_sc0008734.1_g000017 Rmu_sc0010137.1_g000014 Rmu_sc0010308.1_g000003 Rmu_sc0010719.1_g000001 Rmu_sc0014922.1_g000001 Rmu_sc0020148.1_g000001 Rmu_sc0024761.1_g000002 Rmu_sc0024761.1_g000003 Rmu_sc0027638.1_g000002 Rmu_sc0030439.1_g000001 Rmu_sc0033559.1_g000001 Rmu_sc0036789.1_g000001 Rmu_ssc0000173.1_g000015 Rmu_ssc0000245.1_g000025 Rmu_ssc0000342.1_g000001
rosa_roxburghii Rroxscaffold_1G00000980 Rroxscaffold_1G00000990 Rroxscaffold_1G00001050 Rroxscaffold_1G00001070 Rroxscaffold_1G00037490 Rroxscaffold_1G00037600 Rroxscaffold_1G00037640 Rroxscaffold_1G00037680 Rroxscaffold_1G00037700 Rroxscaffold_1G00037720 Rroxscaffold_1G00037780 Rroxscaffold_1G00037810 Rroxscaffold_2G00078660 Rroxscaffold_2G00093050 Rroxscaffold_2G00093070 Rroxscaffold_2G00093120 Rroxscaffold_2G00093140 Rroxscaffold_2G00093950 Rroxscaffold_2G00093980 Rroxscaffold_2G00093990 Rroxscaffold_2G00094050 Rroxscaffold_2G00094080 Rroxscaffold_2G00125300 Rroxscaffold_3G00218210 Rroxscaffold_4G00288530 Rroxscaffold_4G00288580 Rroxscaffold_4G00306260 Rroxscaffold_4G00306350 Rroxscaffold_4G00306420 Rroxscaffold_4G00307420 Rroxscaffold_4G00307660 Rroxscaffold_4G00307690 Rroxscaffold_4G00307720 Rroxscaffold_4G00311180 Rroxscaffold_4G00311220 Rroxscaffold_4G00311240 Rroxscaffold_4G00315940 Rroxscaffold_4G00315950 Rroxscaffold_5G00333080 Rroxscaffold_7G00208670 Rroxscaffold_7G00208690 Rroxscaffold_7G00208700 Rroxscaffold_7G00208710 Rroxscaffold_7G00208830 Rroxscaffold_7G00208840 Rroxscaffold_7G00208860
rosa_rugosa Rorug01G0052800 Rorug01G0052900 Rorug01G0084800 Rorug01G0162300.1 Rorug01G0162600.1 Rorug01G0162700.1 Rorug01G0163100.1 Rorug01G0163300.1 Rorug01G0163800.1 Rorug01G0163900.1 Rorug01G0164200.1 Rorug01G0164400.1 Rorug01G0187700 Rorug01G0187800 Rorug01G0189400 Rorug01G0189500 Rorug01G0189600 Rorug01G0189800 Rorug01G0190200 Rorug01G0190300 Rorug01G0198800 Rorug01G0341700 Rorug02G0445100 Rorug02G0445300 Rorug02G0445400 Rorug02G0452600 Rorug02G0452700 Rorug02G0452800 Rorug02G0453000 Rorug02G0522500 Rorug02G0572500 Rorug05G0203900 Rorug05G0204100 Rorug05G0204200 Rorug05G0204400 Rorug05G0205500 Rorug05G0205600 Rorug05G0484800 Rorug05G0484800 Rorug05G0484900 Rorug05G0570000 Rorug05G0570100 Rorug05G0570200 Rorug05G0570300.1 Rorug05G0570800 Rorug05G0570900 Rorug05G0572200 Rorug05G0572500
rosa_samantha Rh1AG178100 Rh1AG178500 Rh1AG178800 Rh1AG206800 Rh1AG207200 Rh1AG207700 Rh1AG348900 Rh2AG316000 Rh2BG522100 Rh2BG522400 Rh2BG530500 Rh2BG531000 Rh3AG317700 Rh4CG003500 Rh5AG289600 Rh5BG293800 Rh5BG294000 Rh5BG295500 Rh5BG296000 Rh5BG296300 Rh5BG297800 Rh5DG303900 Rh5DG305200 Rh5DG305500 Rh6AG126500
rosa_wichuraiana Rw0G002430 Rw0G013640 Rw1G014810 Rw1G014830 Rw1G014860 Rw1G014870 Rw1G014910 Rw1G017200 Rw1G017210 Rw1G017300 Rw1G017610 Rw1G017670 Rw1G017710 Rw1G017730 Rw1G018330 Rw1G018440 Rw1G031010 Rw1G031040 Rw1G031060 Rw2G042020 Rw2G042760 Rw2G042790 Rw2G042800 Rw2G053460 Rw2G053470 Rw4G000600 Rw5G019620 Rw5G027010 Rw5G049870 Rw5G050460 Rw5G050530 Rw6G007730 Rw6G007740 Rw6G007770 Rw6G007860 Rw6G010660 Rw6G010800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1610
AasI GACNNNNNNGTC 1 cut(s) 3032
AatII GACGTC 1 cut(s) 3030
AccBSI CCGCTC 2 cut(s) 1479, 1824
AccI GTMKAC 1 cut(s) 207
AciI CCGC 7 cut(s) 422, 1009, 1479, 1824, 2009, 2084, 2481
AclWI GGATC 7 cut(s) 1695, 1848, 1873, 2459, 2656, 2728, 2995
AcoI YGGCCR 1 cut(s) 1711
AcuI CTGAAG 6 cut(s) 389, 623, 1335, 1526, 1985, 2309
AcyI GRCGYC 1 cut(s) 3027
AfaI GTAC 4 cut(s) 586, 1719, 1898, 2842
AfiI CCNNNNNNNGG 3 cut(s) 163, 894, 1621
AflIII ACRYGT 1 cut(s) 1497
AgeI ACCGGT 1 cut(s) 587
AhlI ACTAGT 1 cut(s) 860
AjnI CCWGG 2 cut(s) 1614, 2859
AjuI GAANNNNNNNTTGG 6 cut(s) 685, 717, 1189, 1221, 1333, 1365
Alw26I GTCTC 5 cut(s) 359, 900, 1562, 2245, 2785
AlwI GGATC 7 cut(s) 1695, 1848, 1873, 2459, 2656, 2728, 2995
AlwNI CAGNNNCTG 3 cut(s) 269, 412, 2990
AoxI GGCC 3 cut(s) 1337, 1711, 2074
ApeKI GCWGC 9 cut(s) 136, 139, 266, 269, 282, 754, 1510, 2005, 2552
ArsI GACNNNNNNTTYG 4 cut(s) 236, 268, 539, 571
AsiGI ACCGGT 1 cut(s) 587
Asp700I GAANNNNTTC 2 cut(s) 660, 2426
AspS9I GGNCC 5 cut(s) 1193, 1337, 2518, 2704, 2801
AsuHPI GGTGA 6 cut(s) 602, 1213, 1875, 1929, 2173, 2299
AsuII TTCGAA 3 cut(s) 74, 472, 2420
AvaII GGWCC 4 cut(s) 1193, 2518, 2704, 2801
BalI TGGCCA 1 cut(s) 1713
BarI GAAGNNNNNNTAC 2 cut(s) 2477, 2509
BauI CACGAG 2 cut(s) 1445, 2811
BbsI GAAGAC 4 cut(s) 320, 1125, 1269, 2447
BbvI GCAGC 9 cut(s) 148, 151, 253, 256, 269, 741, 1497, 1992, 2564
BcgI CGANNNNNNTGC 2 cut(s) 197, 231
BciT130I CCWGG 2 cut(s) 1616, 2861
BciVI GTATCC 1 cut(s) 3066
BcoDI GTCTC 5 cut(s) 359, 900, 1562, 2245, 2785
BcuI ACTAGT 1 cut(s) 860
BfmI CTRYAG 2 cut(s) 134, 2135
BfuI GTATCC 1 cut(s) 3066
BglII AGATCT 2 cut(s) 826, 1384
BmcAI AGTACT 2 cut(s) 1898, 2842
Bme1390I CCNGG 2 cut(s) 1616, 2861
Bme18I GGWCC 4 cut(s) 1193, 2518, 2704, 2801
BmgT120I GGNCC 5 cut(s) 1193, 1337, 2518, 2704, 2801
BmiI GGNNCC 3 cut(s) 2279, 2592, 2818
BmrFI CCNGG 2 cut(s) 1616, 2861
BmrI ACTGGG 1 cut(s) 1344
BmsI GCATC 4 cut(s) 269, 953, 1184, 2163
BmuI ACTGGG 1 cut(s) 1344
BpiI GAAGAC 4 cut(s) 320, 1125, 1269, 2447
BpmI CTGGAG 2 cut(s) 167, 1788
Bpu14I TTCGAA 3 cut(s) 74, 472, 2420
BpuEI CTTGAG 2 cut(s) 2198, 2551
BsaBI GATNNNNATC 2 cut(s) 1107, 3077
BsaHI GRCGYC 1 cut(s) 3027
BsaI GGTCTC 1 cut(s) 900
BsaJI CCNNGG 7 cut(s) 705, 1614, 1615, 2150, 2281, 2673, 2860
BsaWI WCCGGW 1 cut(s) 587
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 894, 1621
Bse118I RCCGGY 2 cut(s) 587, 844
Bse1I ACTGG 8 cut(s) 184, 613, 770, 1051, 1195, 1339, 1805, 2659
Bse3DI GCAATG 2 cut(s) 2268, 2905
Bse8I GATNNNNATC 2 cut(s) 1107, 3077
BseBI CCWGG 2 cut(s) 1616, 2861
BseDI CCNNGG 7 cut(s) 705, 1614, 1615, 2150, 2281, 2673, 2860
BseGI GGATG 8 cut(s) 284, 1125, 1269, 1734, 1798, 1847, 1886, 2669
BseJI GATNNNNATC 2 cut(s) 1107, 3077
BseLI CCNNNNNNNGG 3 cut(s) 163, 894, 1621
BseMI GCAATG 2 cut(s) 2268, 2905
BseNI ACTGG 8 cut(s) 184, 613, 770, 1051, 1195, 1339, 1805, 2659
BseRI GAGGAG 4 cut(s) 179, 725, 1511, 2898
BseXI GCAGC 9 cut(s) 148, 151, 253, 256, 269, 741, 1497, 1992, 2564
BseYI CCCAGC 1 cut(s) 1152
BsgI GTGCAG 1 cut(s) 672
BshFI GGCC 3 cut(s) 1339, 1713, 2076
BshTI ACCGGT 1 cut(s) 587
BsiSI CCGG 3 cut(s) 360, 588, 845
BslFI GGGAC 4 cut(s) 305, 541, 2248, 2623
BslI CCNNNNNNNGG 3 cut(s) 163, 894, 1621
BsmAI GTCTC 5 cut(s) 359, 900, 1562, 2245, 2785
BsmFI GGGAC 4 cut(s) 305, 541, 2248, 2623
BsmI GAATGC 3 cut(s) 480, 1588, 1710
BsnI GGCC 3 cut(s) 1339, 1713, 2076
Bso31I GGTCTC 1 cut(s) 900
Bsp119I TTCGAA 3 cut(s) 74, 472, 2420
Bsp19I CCATGG 2 cut(s) 705, 2281
BspACI CCGC 7 cut(s) 422, 1009, 1479, 1824, 2009, 2084, 2481
BspANI GGCC 3 cut(s) 1339, 1713, 2076
BspHI TCATGA 1 cut(s) 1761
BspLI GGNNCC 3 cut(s) 2279, 2592, 2818
BspMAI CTGCAG 2 cut(s) 138, 2139
BspPI GGATC 7 cut(s) 1695, 1848, 1873, 2459, 2656, 2728, 2995
BspT104I TTCGAA 3 cut(s) 74, 472, 2420
BspTNI GGTCTC 1 cut(s) 900
BsrBI CCGCTC 2 cut(s) 1479, 1824
BsrDI GCAATG 2 cut(s) 2268, 2905
BsrFI RCCGGY 2 cut(s) 587, 844
BsrI ACTGG 8 cut(s) 184, 613, 770, 1051, 1195, 1339, 1805, 2659
BssAI RCCGGY 2 cut(s) 587, 844
BssECI CCNNGG 7 cut(s) 705, 1614, 1615, 2150, 2281, 2673, 2860
BssNI GRCGYC 1 cut(s) 3027
BssSI CACGAG 2 cut(s) 1445, 2811
BssT1I CCWWGG 4 cut(s) 705, 2150, 2281, 2673
Bst2BI CACGAG 2 cut(s) 1445, 2811
Bst2UI CCWGG 2 cut(s) 1616, 2861
Bst4CI ACNGT 7 cut(s) 584, 1086, 1409, 1530, 1759, 2840, 2880
Bst6I CTCTTC 5 cut(s) 392, 508, 1354, 1560, 3101
BstACI GRCGYC 1 cut(s) 3027
BstBI TTCGAA 3 cut(s) 74, 472, 2420
BstC8I GCNNGC 6 cut(s) 68, 752, 846, 1173, 2003, 2088
BstDSI CCRYGG 2 cut(s) 705, 2281
BstF5I GGATG 8 cut(s) 284, 1125, 1269, 1734, 1798, 1847, 1886, 2669
BstMAI GTCTC 5 cut(s) 359, 900, 1562, 2245, 2785
BstMWI GCNNNNNNNGC 3 cut(s) 369, 1067, 2626
BstNI CCWGG 2 cut(s) 1616, 2861
BstNSI RCATGY 1 cut(s) 70
BstSCI CCNGG 2 cut(s) 1614, 2859
BstSFI CTRYAG 2 cut(s) 134, 2135
BstV1I GCAGC 9 cut(s) 148, 151, 253, 256, 269, 741, 1497, 1992, 2564
BstV2I GAAGAC 4 cut(s) 320, 1125, 1269, 2447
BstX2I RGATCY 6 cut(s) 826, 1384, 1687, 1840, 2733, 2987
BstXI CCANNNNNNTGG 1 cut(s) 706
BstYI RGATCY 6 cut(s) 826, 1384, 1687, 1840, 2733, 2987
BsuI GTATCC 1 cut(s) 3066
BsuRI GGCC 3 cut(s) 1339, 1713, 2076
BtgI CCRYGG 2 cut(s) 705, 2281
BtgZI GCGATG 1 cut(s) 1693
BtsCI GGATG 8 cut(s) 284, 1125, 1269, 1734, 1798, 1847, 1886, 2669
BtsI GCAGTG 1 cut(s) 2018
Cac8I GCNNGC 6 cut(s) 68, 752, 846, 1173, 2003, 2088
CaiI CAGNNNCTG 3 cut(s) 269, 412, 2990
CciI TCATGA 1 cut(s) 1761
Cfr10I RCCGGY 2 cut(s) 587, 844
Cfr13I GGNCC 5 cut(s) 1193, 1337, 2518, 2704, 2801
Csp6I GTAC 4 cut(s) 585, 1718, 1897, 2841
CspAI ACCGGT 1 cut(s) 587
CspCI CAANNNNNGTGG 4 cut(s) 1978, 2013, 2779, 2814
CviQI GTAC 4 cut(s) 585, 1718, 1897, 2841
DraI TTTAAA 3 cut(s) 783, 798, 2049
DrdI GACNNNNNNGTC 1 cut(s) 3032
DseDI GACNNNNNNGTC 1 cut(s) 3032
EaeI YGGCCR 1 cut(s) 1711
Eam1104I CTCTTC 5 cut(s) 392, 508, 1354, 1560, 3101
EarI CTCTTC 5 cut(s) 392, 508, 1354, 1560, 3101
Eco130I CCWWGG 4 cut(s) 705, 2150, 2281, 2673
Eco31I GGTCTC 1 cut(s) 900
Eco32I GATATC 1 cut(s) 1664
Eco47I GGWCC 4 cut(s) 1193, 2518, 2704, 2801
Eco57I CTGAAG 6 cut(s) 389, 623, 1335, 1526, 1985, 2309
EcoRI GAATTC 2 cut(s) 2204, 2597
EcoRII CCWGG 2 cut(s) 1614, 2859
EcoRV GATATC 1 cut(s) 1664
EcoT14I CCWWGG 4 cut(s) 705, 2150, 2281, 2673
EcoT22I ATGCAT 1 cut(s) 1710
ErhI CCWWGG 4 cut(s) 705, 2150, 2281, 2673
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FaqI GGGAC 4 cut(s) 305, 541, 2248, 2623
FauI CCCGC 2 cut(s) 2091, 2474
FauNDI CATATG 1 cut(s) 2848
FblI GTMKAC 1 cut(s) 207
FokI GGATG 8 cut(s) 291, 1112, 1256, 1741, 1785, 1834, 1873, 2656
GsaI CCCAGC 1 cut(s) 1156
GsuI CTGGAG 2 cut(s) 167, 1788
HaeIII GGCC 3 cut(s) 1339, 1713, 2076
HapII CCGG 3 cut(s) 360, 588, 845
Hin1I GRCGYC 1 cut(s) 3027
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HindIII AAGCTT 3 cut(s) 196, 659, 929
HpaII CCGG 3 cut(s) 360, 588, 845
HphI GGTGA 6 cut(s) 602, 1213, 1875, 1929, 2173, 2299
Hpy166II GTNNAC 4 cut(s) 208, 1928, 2430, 2518
Hpy8I GTNNAC 4 cut(s) 208, 1928, 2430, 2518
Hpy99I CGWCG 3 cut(s) 209, 212, 680
HpyAV CCTTC 8 cut(s) 1890, 2066, 2478, 2503, 2576, 2581, 2846, 2931
HpyCH4III ACNGT 7 cut(s) 584, 1086, 1409, 1530, 1759, 2840, 2880
HpyCH4IV ACGT 2 cut(s) 1499, 3027
HpyF10VI GCNNNNNNNGC 3 cut(s) 369, 1067, 2626
HpySE526I ACGT 2 cut(s) 1499, 3027
Hsp92I GRCGYC 1 cut(s) 3027
KroI GCCGGC 1 cut(s) 844
KroNI GCCGGC 1 cut(s) 846
LmnI GCTCC 5 cut(s) 186, 377, 677, 1821, 2911
Lsp1109I GCAGC 9 cut(s) 148, 151, 253, 256, 269, 741, 1497, 1992, 2564
LweI GCATC 4 cut(s) 269, 953, 1184, 2163
MaeII ACGT 2 cut(s) 1499, 3027
MaeIII GTNAC 9 cut(s) 578, 873, 1086, 1095, 1121, 1228, 1265, 1447, 3034
MbiI CCGCTC 2 cut(s) 1479, 1824
MfeI CAATTG 2 cut(s) 539, 2912
MflI RGATCY 6 cut(s) 826, 1384, 1687, 1840, 2733, 2987
MlsI TGGCCA 1 cut(s) 1713
MluNI TGGCCA 1 cut(s) 1713
MlyI GAGTC 4 cut(s) 1430, 2230, 2247, 3106
MmeI TCCRAC 3 cut(s) 399, 1875, 2989
Mox20I TGGCCA 1 cut(s) 1713
Mph1103I ATGCAT 1 cut(s) 1710
MroNI GCCGGC 1 cut(s) 844
MroXI GAANNNNTTC 2 cut(s) 660, 2426
MscI TGGCCA 1 cut(s) 1713
MseI TTAA 9 cut(s) 189, 782, 797, 807, 1187, 1331, 2048, 2684, 3060
MslI CAYNNNNRTG 3 cut(s) 1116, 2271, 2435
Msp20I TGGCCA 1 cut(s) 1713
MspA1I CMGCKG 1 cut(s) 266
MspI CCGG 3 cut(s) 360, 588, 845
MspR9I CCNGG 2 cut(s) 1616, 2861
MunI CAATTG 2 cut(s) 539, 2912
Mva1269I GAATGC 3 cut(s) 480, 1588, 1710
MvaI CCWGG 2 cut(s) 1616, 2861
MwoI GCNNNNNNNGC 3 cut(s) 369, 1067, 2626
NaeI GCCGGC 1 cut(s) 846
NcoI CCATGG 2 cut(s) 705, 2281
NdeI CATATG 1 cut(s) 2848
NgoMIV GCCGGC 1 cut(s) 844
NlaIV GGNNCC 3 cut(s) 2279, 2592, 2818
NmuCI GTSAC 7 cut(s) 578, 873, 1086, 1095, 1228, 1447, 3034
NsiI ATGCAT 1 cut(s) 1710
NspI RCATGY 1 cut(s) 70
NspV TTCGAA 3 cut(s) 74, 472, 2420
PaeI GCATGC 1 cut(s) 70
PagI TCATGA 1 cut(s) 1761
PasI CCCWGGG 1 cut(s) 1615
PctI GAATGC 3 cut(s) 480, 1588, 1710
PdiI GCCGGC 1 cut(s) 846
PdmI GAANNNNTTC 2 cut(s) 660, 2426
PflFI GACNNNGTC 1 cut(s) 296
PinAI ACCGGT 1 cut(s) 587
PleI GAGTC 4 cut(s) 1429, 2230, 2247, 3106
PpsI GAGTC 4 cut(s) 1429, 2230, 2247, 3106
PsiI TTATAA 1 cut(s) 1610
Psp6I CCWGG 2 cut(s) 1614, 2859
PspFI CCCAGC 1 cut(s) 1152
PspGI CCWGG 2 cut(s) 1614, 2859
PspN4I GGNNCC 3 cut(s) 2279, 2592, 2818
PspPI GGNCC 5 cut(s) 1193, 1337, 2518, 2704, 2801
PstI CTGCAG 2 cut(s) 138, 2139
PstNI CAGNNNCTG 3 cut(s) 269, 412, 2990
PsuI RGATCY 6 cut(s) 826, 1384, 1687, 1840, 2733, 2987
PsyI GACNNNGTC 1 cut(s) 296
PvuII CAGCTG 1 cut(s) 266
RsaI GTAC 4 cut(s) 586, 1719, 1898, 2842
RsaNI GTAC 4 cut(s) 585, 1718, 1897, 2841
RseI CAYNNNNRTG 3 cut(s) 1116, 2271, 2435
SalI GTCGAC 1 cut(s) 206
SaqAI TTAA 9 cut(s) 189, 782, 797, 807, 1187, 1331, 2048, 2684, 3060
Sau96I GGNCC 5 cut(s) 1193, 1337, 2518, 2704, 2801
ScaI AGTACT 2 cut(s) 1898, 2842
SchI GAGTC 4 cut(s) 1430, 2230, 2247, 3106
ScrFI CCNGG 2 cut(s) 1616, 2861
SfaNI GCATC 4 cut(s) 269, 953, 1184, 2163
SfcI CTRYAG 2 cut(s) 134, 2135
SfuI TTCGAA 3 cut(s) 74, 472, 2420
SgrDI CGTCGACG 1 cut(s) 206
SinI GGWCC 4 cut(s) 1193, 2518, 2704, 2801
SmiMI CAYNNNNRTG 3 cut(s) 1116, 2271, 2435
SmlI CTYRAG 2 cut(s) 2177, 2566
SmoI CTYRAG 2 cut(s) 2177, 2566
SpeI ACTAGT 1 cut(s) 860
SphI GCATGC 1 cut(s) 70
SsiI CCGC 7 cut(s) 422, 1009, 1479, 1824, 2009, 2084, 2481
SspI AATATT 1 cut(s) 3064
StyD4I CCNGG 2 cut(s) 1614, 2859
StyI CCWWGG 4 cut(s) 705, 2150, 2281, 2673
TaaI ACNGT 7 cut(s) 584, 1086, 1409, 1530, 1759, 2840, 2880
TaiI ACGT 2 cut(s) 1502, 3030
TaqI TCGA 9 cut(s) 74, 207, 300, 472, 961, 1893, 2420, 2539, 2740
TaqII GACCGA 1 cut(s) 2535
TatI WGTACW 2 cut(s) 1896, 2840
TauI GCSGC 4 cut(s) 1012, 1482, 1827, 2011
Tru1I TTAA 9 cut(s) 189, 782, 797, 807, 1187, 1331, 2048, 2684, 3060
Tru9I TTAA 9 cut(s) 189, 782, 797, 807, 1187, 1331, 2048, 2684, 3060
TseFI GTSAC 7 cut(s) 578, 873, 1086, 1095, 1228, 1447, 3034
TseI GCWGC 9 cut(s) 136, 139, 266, 269, 282, 754, 1510, 2005, 2552
Tsp45I GTSAC 7 cut(s) 578, 873, 1086, 1095, 1228, 1447, 3034
TspGWI ACGGA 2 cut(s) 380, 664
Tth111I GACNNNGTC 1 cut(s) 296
VpaK11BI GGWCC 4 cut(s) 1193, 2518, 2704, 2801
XbaI TCTAGA 2 cut(s) 1459, 2311
XceI RCATGY 1 cut(s) 70
XmiI GTMKAC 1 cut(s) 207
XmnI GAANNNNTTC 2 cut(s) 660, 2426
ZraI GACGTC 1 cut(s) 3028
ZrmI AGTACT 2 cut(s) 1898, 2842
Zsp2I ATGCAT 1 cut(s) 1710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.