transposition, RNA-mediated
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 372 |
| AccII | CGCG | 1 cut(s) | 96 |
| AciI | CCGC | 2 cut(s) | 298, 898 |
| AcsI | RAATTY | 9 cut(s) | 116, 446, 535, 547, 822, 1105, 1169, 1182, 1238 |
| AcuI | CTGAAG | 1 cut(s) | 534 |
| AcvI | CACGTG | 1 cut(s) | 946 |
| AfaI | GTAC | 3 cut(s) | 26, 974, 1159 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 329 |
| AjnI | CCWGG | 2 cut(s) | 651, 1141 |
| AleI | CACNNNNGTG | 1 cut(s) | 988 |
| AluBI | AGCT | 5 cut(s) | 295, 346, 559, 568, 755 |
| AluI | AGCT | 5 cut(s) | 295, 346, 559, 568, 755 |
| Alw21I | GWGCWC | 1 cut(s) | 85 |
| Alw26I | GTCTC | 1 cut(s) | 162 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1193 |
| Ama87I | CYCGRG | 2 cut(s) | 245, 839 |
| ApeKI | GCWGC | 3 cut(s) | 104, 295, 796 |
| ApoI | RAATTY | 9 cut(s) | 116, 446, 535, 547, 822, 1105, 1169, 1182, 1238 |
| AspLEI | GCGC | 2 cut(s) | 415, 478 |
| AspS9I | GGNCC | 1 cut(s) | 300 |
| AsuHPI | GGTGA | 3 cut(s) | 536, 840, 937 |
| AsuII | TTCGAA | 1 cut(s) | 112 |
| AvaI | CYCGRG | 2 cut(s) | 245, 839 |
| AvaII | GGWCC | 1 cut(s) | 300 |
| BbrPI | CACGTG | 1 cut(s) | 946 |
| Bbv12I | GWGCWC | 1 cut(s) | 85 |
| BbvCI | CCTCAGC | 1 cut(s) | 147 |
| BbvI | GCAGC | 3 cut(s) | 116, 282, 783 |
| BccI | CCATC | 5 cut(s) | 129, 224, 385, 1072, 1247 |
| BceAI | ACGGC | 1 cut(s) | 170 |
| BciT130I | CCWGG | 2 cut(s) | 653, 1143 |
| BclI | TGATCA | 3 cut(s) | 808, 1086, 1227 |
| BcoDI | GTCTC | 1 cut(s) | 162 |
| BfaI | CTAG | 7 cut(s) | 209, 281, 378, 623, 857, 962, 1070 |
| BfmI | CTRYAG | 1 cut(s) | 750 |
| BglII | AGATCT | 2 cut(s) | 211, 517 |
| BisI | GCNGC | 3 cut(s) | 105, 296, 797 |
| BlpI | GCTNAGC | 1 cut(s) | 909 |
| BlsI | GCNGC | 3 cut(s) | 106, 297, 798 |
| Bme1390I | CCNGG | 2 cut(s) | 653, 1143 |
| Bme18I | GGWCC | 1 cut(s) | 300 |
| BmeT110I | CYCGRG | 2 cut(s) | 245, 839 |
| BmgT120I | GGNCC | 1 cut(s) | 300 |
| BmrFI | CCNGG | 2 cut(s) | 653, 1143 |
| BmsI | GCATC | 4 cut(s) | 133, 165, 231, 661 |
| BpmI | CTGGAG | 1 cut(s) | 997 |
| Bpu10I | CCTNAGC | 1 cut(s) | 147 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 909 |
| Bpu14I | TTCGAA | 1 cut(s) | 112 |
| BpuEI | CTTGAG | 2 cut(s) | 332, 1004 |
| BsaAI | YACGTR | 1 cut(s) | 946 |
| BsaJI | CCNNGG | 3 cut(s) | 530, 651, 1261 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 329 |
| Bse1I | ACTGG | 3 cut(s) | 633, 818, 980 |
| BseBI | CCWGG | 2 cut(s) | 653, 1143 |
| BseDI | CCNNGG | 3 cut(s) | 530, 651, 1261 |
| BseGI | GGATG | 2 cut(s) | 180, 1013 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 329 |
| BseMII | CTCAG | 3 cut(s) | 138, 246, 900 |
| BseNI | ACTGG | 3 cut(s) | 633, 818, 980 |
| BseXI | GCAGC | 3 cut(s) | 116, 282, 783 |
| Bsh1236I | CGCG | 1 cut(s) | 96 |
| BsiHKAI | GWGCWC | 1 cut(s) | 85 |
| BsiHKCI | CYCGRG | 2 cut(s) | 245, 839 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 329 |
| BsmAI | GTCTC | 1 cut(s) | 162 |
| BsoBI | CYCGRG | 2 cut(s) | 245, 839 |
| Bsp119I | TTCGAA | 1 cut(s) | 112 |
| Bsp1286I | GDGCHC | 1 cut(s) | 85 |
| Bsp143I | GATC | 7 cut(s) | 76, 211, 517, 808, 845, 1086, 1227 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 909 |
| Bsp19I | CCATGG | 2 cut(s) | 530, 1261 |
| Bsp68I | TCGCGA | 1 cut(s) | 96 |
| BspACI | CCGC | 2 cut(s) | 298, 898 |
| BspCNI | CTCAG | 3 cut(s) | 139, 247, 901 |
| BspFNI | CGCG | 1 cut(s) | 96 |
| BspT104I | TTCGAA | 1 cut(s) | 112 |
| BsrI | ACTGG | 3 cut(s) | 633, 818, 980 |
| BssECI | CCNNGG | 3 cut(s) | 530, 651, 1261 |
| BssMI | GATC | 7 cut(s) | 76, 211, 517, 808, 845, 1086, 1227 |
| BssT1I | CCWWGG | 2 cut(s) | 530, 1261 |
| Bst2UI | CCWGG | 2 cut(s) | 653, 1143 |
| Bst4CI | ACNGT | 2 cut(s) | 686, 1213 |
| Bst6I | CTCTTC | 4 cut(s) | 33, 52, 231, 912 |
| BstBAI | YACGTR | 1 cut(s) | 946 |
| BstBI | TTCGAA | 1 cut(s) | 112 |
| BstC8I | GCNNGC | 1 cut(s) | 757 |
| BstDEI | CTNAG | 4 cut(s) | 147, 255, 693, 909 |
| BstDSI | CCRYGG | 2 cut(s) | 530, 1261 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 327 |
| BstF5I | GGATG | 2 cut(s) | 180, 1013 |
| BstFNI | CGCG | 1 cut(s) | 96 |
| BstHHI | GCGC | 2 cut(s) | 415, 478 |
| BstKTI | GATC | 7 cut(s) | 79, 214, 520, 811, 848, 1089, 1230 |
| BstMAI | GTCTC | 1 cut(s) | 162 |
| BstMBI | GATC | 7 cut(s) | 76, 211, 517, 808, 845, 1086, 1227 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 565, 686 |
| BstNI | CCWGG | 2 cut(s) | 653, 1143 |
| BstSCI | CCNGG | 2 cut(s) | 651, 1141 |
| BstSFI | CTRYAG | 1 cut(s) | 750 |
| BstUI | CGCG | 1 cut(s) | 96 |
| BstV1I | GCAGC | 3 cut(s) | 116, 282, 783 |
| BstX2I | RGATCY | 2 cut(s) | 211, 517 |
| BstYI | RGATCY | 2 cut(s) | 211, 517 |
| BtgI | CCRYGG | 2 cut(s) | 530, 1261 |
| BtsCI | GGATG | 2 cut(s) | 180, 1013 |
| BtsIMutI | CAGTG | 1 cut(s) | 811 |
| BtuMI | TCGCGA | 1 cut(s) | 96 |
| Cac8I | GCNNGC | 1 cut(s) | 757 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1193 |
| CfoI | GCGC | 2 cut(s) | 415, 478 |
| Cfr13I | GGNCC | 1 cut(s) | 300 |
| CseI | GACGC | 1 cut(s) | 802 |
| Csp6I | GTAC | 3 cut(s) | 25, 973, 1158 |
| CviAII | CATG | 3 cut(s) | 531, 878, 1262 |
| CviQI | GTAC | 3 cut(s) | 25, 973, 1158 |
| DdeI | CTNAG | 4 cut(s) | 147, 255, 693, 909 |
| DpnI | GATC | 7 cut(s) | 78, 213, 519, 810, 847, 1088, 1229 |
| DpnII | GATC | 7 cut(s) | 76, 211, 517, 808, 845, 1086, 1227 |
| Eam1104I | CTCTTC | 4 cut(s) | 33, 52, 231, 912 |
| EarI | CTCTTC | 4 cut(s) | 33, 52, 231, 912 |
| Eco130I | CCWWGG | 2 cut(s) | 530, 1261 |
| Eco32I | GATATC | 2 cut(s) | 643, 1067 |
| Eco47I | GGWCC | 1 cut(s) | 300 |
| Eco57I | CTGAAG | 1 cut(s) | 534 |
| Eco72I | CACGTG | 1 cut(s) | 946 |
| Eco88I | CYCGRG | 2 cut(s) | 245, 839 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 327 |
| EcoRI | GAATTC | 3 cut(s) | 446, 1105, 1169 |
| EcoRII | CCWGG | 2 cut(s) | 651, 1141 |
| EcoRV | GATATC | 2 cut(s) | 643, 1067 |
| EcoT14I | CCWWGG | 2 cut(s) | 530, 1261 |
| ErhI | CCWWGG | 2 cut(s) | 530, 1261 |
| FaeI | CATG | 3 cut(s) | 534, 881, 1265 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1043, 1075 |
| FatI | CATG | 3 cut(s) | 530, 877, 1261 |
| FauI | CCCGC | 1 cut(s) | 905 |
| FbaI | TGATCA | 3 cut(s) | 808, 1086, 1227 |
| Fnu4HI | GCNGC | 3 cut(s) | 105, 296, 797 |
| FokI | GGATG | 2 cut(s) | 187, 1000 |
| Fsp4HI | GCNGC | 3 cut(s) | 105, 296, 797 |
| FspBI | CTAG | 7 cut(s) | 209, 281, 378, 623, 857, 962, 1070 |
| GlaI | GCGC | 2 cut(s) | 414, 477 |
| GluI | GCNGC | 3 cut(s) | 105, 296, 797 |
| GsuI | CTGGAG | 1 cut(s) | 997 |
| HgaI | GACGC | 1 cut(s) | 802 |
| HhaI | GCGC | 2 cut(s) | 415, 478 |
| Hin1II | CATG | 3 cut(s) | 534, 881, 1265 |
| Hin6I | GCGC | 2 cut(s) | 413, 476 |
| HinP1I | GCGC | 2 cut(s) | 413, 476 |
| HindIII | AAGCTT | 2 cut(s) | 557, 566 |
| HphI | GGTGA | 3 cut(s) | 536, 840, 937 |
| Hpy166II | GTNNAC | 7 cut(s) | 6, 506, 527, 890, 949, 983, 1160 |
| Hpy188I | TCNGA | 4 cut(s) | 229, 729, 1189, 1195 |
| Hpy188III | TCNNGA | 9 cut(s) | 95, 316, 803, 839, 841, 857, 1021, 1070, 1231 |
| Hpy8I | GTNNAC | 7 cut(s) | 6, 506, 527, 890, 949, 983, 1160 |
| HpyAV | CCTTC | 1 cut(s) | 1228 |
| HpyCH4III | ACNGT | 2 cut(s) | 686, 1213 |
| HpyCH4IV | ACGT | 1 cut(s) | 945 |
| HpyCH4V | TGCA | 3 cut(s) | 178, 273, 689 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 565, 686 |
| HpyF3I | CTNAG | 4 cut(s) | 147, 255, 693, 909 |
| HpySE526I | ACGT | 1 cut(s) | 945 |
| Hsp92II | CATG | 3 cut(s) | 534, 881, 1265 |
| HspAI | GCGC | 2 cut(s) | 413, 476 |
| Ksp22I | TGATCA | 3 cut(s) | 808, 1086, 1227 |
| Kzo9I | GATC | 7 cut(s) | 76, 211, 517, 808, 845, 1086, 1227 |
| Lsp1109I | GCAGC | 3 cut(s) | 116, 282, 783 |
| LweI | GCATC | 4 cut(s) | 133, 165, 231, 661 |
| MaeI | CTAG | 7 cut(s) | 209, 281, 378, 623, 857, 962, 1070 |
| MaeII | ACGT | 1 cut(s) | 945 |
| MaeIII | GTNAC | 1 cut(s) | 249 |
| MalI | GATC | 7 cut(s) | 78, 213, 519, 810, 847, 1088, 1229 |
| MboI | GATC | 7 cut(s) | 76, 211, 517, 808, 845, 1086, 1227 |
| MboII | GAAGA | 8 cut(s) | 39, 50, 116, 248, 527, 929, 1135, 1178 |
| MflI | RGATCY | 2 cut(s) | 211, 517 |
| MhlI | GDGCHC | 1 cut(s) | 85 |
| MlyI | GAGTC | 6 cut(s) | 268, 380, 724, 890, 988, 1199 |
| MnlI | CCTC | 8 cut(s) | 61, 142, 277, 365, 574, 685, 913, 1028 |
| MseI | TTAA | 7 cut(s) | 29, 494, 720, 1100, 1268, 1275, 1294 |
| MslI | CAYNNNNRTG | 3 cut(s) | 132, 331, 988 |
| MspA1I | CMGCKG | 1 cut(s) | 900 |
| MspR9I | CCNGG | 2 cut(s) | 653, 1143 |
| MvaI | CCWGG | 2 cut(s) | 653, 1143 |
| MvnI | CGCG | 1 cut(s) | 96 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 565, 686 |
| NcoI | CCATGG | 2 cut(s) | 530, 1261 |
| NdeII | GATC | 7 cut(s) | 76, 211, 517, 808, 845, 1086, 1227 |
| NlaIII | CATG | 3 cut(s) | 534, 881, 1265 |
| NruI | TCGCGA | 1 cut(s) | 96 |
| NspV | TTCGAA | 1 cut(s) | 112 |
| OliI | CACNNNNGTG | 1 cut(s) | 988 |
| PaeR7I | CTCGAG | 2 cut(s) | 245, 839 |
| PfeI | GAWTC | 6 cut(s) | 98, 319, 853, 860, 1056, 1257 |
| PfoI | TCCNGGA | 1 cut(s) | 1141 |
| PkrI | GCNGC | 3 cut(s) | 106, 297, 798 |
| PleI | GAGTC | 6 cut(s) | 267, 380, 724, 889, 987, 1198 |
| PmaCI | CACGTG | 1 cut(s) | 946 |
| PmlI | CACGTG | 1 cut(s) | 946 |
| PpsI | GAGTC | 6 cut(s) | 267, 380, 724, 889, 987, 1198 |
| Ppu21I | YACGTR | 1 cut(s) | 946 |
| PsiI | TTATAA | 1 cut(s) | 372 |
| Psp6I | CCWGG | 2 cut(s) | 651, 1141 |
| PspCI | CACGTG | 1 cut(s) | 946 |
| PspGI | CCWGG | 2 cut(s) | 651, 1141 |
| PspPI | GGNCC | 1 cut(s) | 300 |
| PspXI | VCTCGAGB | 1 cut(s) | 245 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 941, 973 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1193 |
| PsuI | RGATCY | 2 cut(s) | 211, 517 |
| RruI | TCGCGA | 1 cut(s) | 96 |
| RsaI | GTAC | 3 cut(s) | 26, 974, 1159 |
| RsaNI | GTAC | 3 cut(s) | 25, 973, 1158 |
| RseI | CAYNNNNRTG | 3 cut(s) | 132, 331, 988 |
| SaqAI | TTAA | 7 cut(s) | 29, 494, 720, 1100, 1268, 1275, 1294 |
| SatI | GCNGC | 3 cut(s) | 105, 296, 797 |
| Sau3AI | GATC | 7 cut(s) | 76, 211, 517, 808, 845, 1086, 1227 |
| Sau96I | GGNCC | 1 cut(s) | 300 |
| SchI | GAGTC | 6 cut(s) | 268, 380, 724, 890, 988, 1199 |
| ScrFI | CCNGG | 2 cut(s) | 653, 1143 |
| SduI | GDGCHC | 1 cut(s) | 85 |
| SfaNI | GCATC | 4 cut(s) | 133, 165, 231, 661 |
| SfcI | CTRYAG | 1 cut(s) | 750 |
| Sfr274I | CTCGAG | 2 cut(s) | 245, 839 |
| SfuI | TTCGAA | 1 cut(s) | 112 |
| SinI | GGWCC | 1 cut(s) | 300 |
| SlaI | CTCGAG | 2 cut(s) | 245, 839 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 132, 331, 988 |
| SmlI | CTYRAG | 4 cut(s) | 245, 347, 839, 1019 |
| SmoI | CTYRAG | 4 cut(s) | 245, 347, 839, 1019 |
| SsiI | CCGC | 2 cut(s) | 298, 898 |
| SspI | AATATT | 1 cut(s) | 422 |
| SspMI | CTAG | 7 cut(s) | 209, 281, 378, 623, 857, 962, 1070 |
| StyD4I | CCNGG | 2 cut(s) | 651, 1141 |
| StyI | CCWWGG | 2 cut(s) | 530, 1261 |
| TaaI | ACNGT | 2 cut(s) | 686, 1213 |
| TaiI | ACGT | 1 cut(s) | 948 |
| TaqI | TCGA | 5 cut(s) | 79, 112, 246, 389, 840 |
| TatI | WGTACW | 2 cut(s) | 24, 972 |
| TfiI | GAWTC | 6 cut(s) | 98, 319, 853, 860, 1056, 1257 |
| Tru1I | TTAA | 7 cut(s) | 29, 494, 720, 1100, 1268, 1275, 1294 |
| Tru9I | TTAA | 7 cut(s) | 29, 494, 720, 1100, 1268, 1275, 1294 |
| TscAI | CASTG | 1 cut(s) | 818 |
| TseI | GCWGC | 3 cut(s) | 104, 295, 796 |
| TspDTI | ATGAA | 6 cut(s) | 51, 116, 678, 726, 845, 1194 |
| TspGWI | ACGGA | 2 cut(s) | 122, 1279 |
| TspRI | CASTG | 1 cut(s) | 818 |
| VpaK11BI | GGWCC | 1 cut(s) | 300 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 327 |
| XapI | RAATTY | 9 cut(s) | 116, 446, 535, 547, 822, 1105, 1169, 1182, 1238 |
| XbaI | TCTAGA | 2 cut(s) | 856, 1069 |
| XhoI | CTCGAG | 2 cut(s) | 245, 839 |
| XspI | CTAG | 7 cut(s) | 209, 281, 378, 623, 857, 962, 1070 |