Rroxscaffold_2G00093990

Leucine rich repeat N-terminal domain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
15306384 .. 15309509
3126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00093990.1

Sequence Viewer

Length: 3126 bp
ATGGAAGATGCTCTGCTTTCTGTCTATAAAAGGGTCTTAAGTTCTCTGTTATGTGAAACCCACAAGCCTACATACACATATACAGAGGGCACAGAATTTTTCATGGGAACGGAAATGGGATCATCTTTGTGGGAATTCTTTTCTGTGCGTTATATTATACTCTTGTTGCTCATTAATGCTGCATGCTGTTTTTCTTTTGTACAAACGCAGACACTTTGCCACGATGATGAGCGCTCTGCCTTGTTGCAATTCAAAGCTAGTTTCACGATAAACAAGTATGCTTCCCAAGATCCCTTTGCTTATCCGAAAGTTGCATATTGGGGTAGGTCAGAAGGAGATCCTCCAAGGAGTAACTGTTGTTCATGGGATGGTGTTGAATGCAGCCACGACTCTGGCCACGTTATTGGCCTTGACCTCGCCAGCAGCTATCTTCATGGTTCCATCAACTCCAATAGCAGTCTTTTTCAACTTGTTCAGTTGCAGAGGCTTGACCTCTCGGACAACAACTTCAGCTACTCTCAAGTACCATCTAGGTTAGGCCATGATCTTACTAGTCTAACATATCTCAACCTATCCATGTCTTCTTTTTCTGGCCAAATTCCATCAGAAATTTCATATCTATCCAAGCTGTCTGCCCTTGATCTGTCTTTTAATTACGAGTCTAATCTCAAAATGGCCAACTTCGGAAGCCTAGTTCATAACTTGACCAACATAAAACAGCTTCATCTTAGTGGGCTAGAGATAGGCTCCACAGTGCCTAGTACATTGGTGAATGTGTCTTCTCTCACATCTCTCCGTCTTCAAGCATGTAACTTGGAAGGGCAGTTCCCAGTAGGCATTTTCCACCTACCAAACTTGCAAGTACTCGATTTGGCCAGTAACTTTGATCTAAACGGTTACTTTCCTGATGAGCTTAACAAGAGCAGTCCCTTGAAAATATTGAATGTGCAGTCAACCAATTTCTCTGGTCATCTACCTGCTTCAATCGGAGACCTTCGTGCCTTAAATTTGTTGAACATAGCATTCTGTCGGTTTTATCCCCATATTCCATCTTCACTCTCCAACCTTACCCAGCTCAATTTCCTTGGTCTTTCTTCCTTTTTTTCCAACGACGGTACTTTAAGTGGCCAAGTTACTGATTCCTGGTCTTGGGTTGGAAAGCTGACCAGACTTAACAATTTGTTCCTAGCCGAGACCAACTTAAGGGGAGATTTCCCATGTTTTTTGGCTAATCTGACGCAACTTGTGGAATTGGATTTGCACTACAATAATATAACTGGTGAAATCCCATGTTTTTTGGCTAATCTGACACAGCTTTCGATATTAACCTTGCGCCAAAATCAAATAACTGGTCAAATCCCATCTTGCCTTGGGCAGACCCATTTGACTGCATTAGACGCAGGATGGAACAATCTGCAAGGAACAATTCCCAGGTCACTATTCGAGCTTAGAAATCTTGAAGTTTTTTACCTCGACTCAAATAACTTGAGTGGGTATGTTGAATTCGATGAGTTTTCCAAGCTCGGAAAGTTGAGGGGACTTGATCTGTCGAACAACAAGTTATCTGTGCATATCAAAACTAGATTTACTGGTATTCCTCCAAAGCTTCAAGTACTAGGATTGGGTTCATGCAACTTAACAGAGTTTCCGGAATTTTTGAAGTTCAATAGTGTACTGACATATCTAGATCTATATGAAAACAATCTTCATGGCCAAATACCAAAATGGATGTGGAATTCAGCTAGTGAAACTTTGTTGTATCTCAACCTCTTTCACAACCACTTAACTGGATTTGAAGAAAATCCGGTCATTATTCCATGGCCTCGGTTAATCTCTTTACAGCTTGACTCTAACATGTTACGAGGATCATTGCCAATTCCAGGGCCATCAATGGCAGTCTATTCTGTTTCAAACAATGAATACGCAGGAGAAATTCCAGCAACATTCTGCAACGCGGGGGACCTATATCTTCTTGATTTGTCCAGCAACAACCTGAATGGCATGATTCCCCAATGTTTTGAGAATCTCAGAGCTCTTAAGATATTGAAACTGCAGAACAATTCTTTTCACGGGGATATTCCTCGAATAGGTTCAAACAGATGTTTGAACTTAGAAGCCATTGACTTGAGTTATAATCAGCTACAAGGGAAGCTACCAAGATCAATTGCCAATTGTTCTGGGTTGGTGTTTCTTAATTTGGGAAATAATCAGATCAGTGATACCTTCCCATCTTGGTTAGGAACACTTCAACAATTAAAAGTTCTCATTTTGCGGTCCAATGCATTTCATGGCATAATTGGGAAGCCTGCTAGTAGCCATGAGTTTCCTGAGCTGTCCATCATTGATTTATCTAGCAATGATTTTTCAAGTATGTTGCCCTCCGACTACTTAGAGAACTGGAATGCCATGAAATCTGTTGATGCAAACGAGCAAATATACCTCCAATACTGGATCACTTACGCGAATTACTATTATTTCTATGATTACGTGATTACAGTTTTTAGCAAAGGTGGTGAATTGAAGTATTTCAAGACCCCTTATCTTCTGAGAATCGTAGACTTCTCAAGTAACAGATTTCACGGAGAGATCCCCGGTATCATTGGGAACCTAAGAGGGCTTCATTTGCTTAATCTTTCCAACAACACTCTCACTGGTCTCATCCCCTCTTCTTTGGGGAATTTGAGTGCTCTTGAATCGTTGGATCTCTCCCAAAATCAGCTCTCAGGAAAGATCCCCAGTGATTTAGCACAACTGACATTCCTTGCATACTTTAATGTAACCCACAATCGTCTTTCGGGGTCCATTCCACAAGGTCGACAATTTGATACATTCCAAGAGGATATGTACCAAGGAAACTCAGGTTTGTGTGGAAAACCTTTGCCAAAGAAATGTGAAGAATCTGAGAGCACAACACCACAAACATCAAGCTTTGAACAAGACGAAGACTCTGGATTTCAAATTGAACTAGATTGGTTTGTGGTTCTGCCAGGAGTTGTTGCTGGTCTAATAGTTGGAGTTGTTGGGGCAGACTTCTGGACAACCAAGAAGCATGACTGGTTTATAGAGACATTCAGCAGGAAGAGGCAGCCGAGAGGCATAAGGCAGAAGAGGGGACTCAGAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1041

Amino Acids

116.48

Weight (kDa)

5.56

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 152 - 291 2e-07 Leucine-rich repeat region
LRR_14 PF23598 284 - 423 6.4e-10 Leucine-rich repeat region
LRR_14 PF23598 409 - 590 1.3e-06 Leucine-rich repeat region
LRR_8 PF13855 461 - 521 2.7e-06 Leucine rich repeat
LRR_8 PF13855 647 - 688 6.3e-06 Leucine rich repeat
LRR_14 PF23598 847 - 929 9.1e-06 Leucine-rich repeat region
LRR_8 PF13855 849 - 907 1e-07 Leucine rich repeat
LRR_8 PF13855 871 - 931 4.2e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000024)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45616 AT1G47890 AT2G25440 AT2G32660 AT2G32660 AT2G32680 AT2G33020 AT2G33030 AT2G33050 AT2G33060 AT2G33080 AT3G24900 AT3G24900 AT3G24982 AT3G25010 AT3G25010 AT3G25020 AT4G13810 AT4G13810 AT4G13810 AT4G13820 AT4G13880 AT4G13920 AT5G40170
fragaria_vesca FvH4_2g05950 FvH4_3g24110 FvH4_5g04000 FvH4_6g04890 FvH4_6g31760 FvH4_6g40760 FvH4_6g40800 FvH4_6g40820 FvH4_6g40840 FvH4_6g40842 FvH4_6g40843 FvH4_6g40847 FvH4_7g06093 FvH4_7g10111 FvH4_7g10112 FvH4_7g10113 FvH4_7g10114 FvH4_7g10130 FvH4_7g10150 FvH4_7g31280
malus_domestica MD00G1164200.v1.1 MD00G1164300.v1.1 MD01G1109000.v1.1 MD01G1109100.v1.1 MD07G1068900.v1.1 MD07G1069000.v1.1 MD07G1069300.v1.1 MD07G1069600.v1.1 MD07G1106700.v1.1 MD07G1106900.v1.1 MD07G1107200.v1.1 MD07G1107300.v1.1 MD07G1107400.v1.1 MD07G1107800.v1.1 MD09G1124300.v1.1 MD09G1124700.v1.1 MD09G1124800.v1.1 MD09G1124900.v1.1 MD09G1125100.v1.1 MD09G1125300.v1.1 MD09G1125400.v1.1 MD09G1125500.v1.1 MD09G1125600.v1.1 MD09G1130600.v1.1 MD09G1130900.v1.1 MD09G1131100.v1.1 MD17G1115000.v1.1 MD17G1115100.v1.1 MD17G1115300.v1.1 MD17G1115500.v1.1
prunus_persica Prupe.2G128400_v2.0.a1 Prupe.2G128600_v2.0.a1 Prupe.2G128700_v2.0.a1 Prupe.2G130100_v2.0.a1 Prupe.2G130300_v2.0.a1 Prupe.2G130400_v2.0.a1 Prupe.2G130500_v2.0.a1 Prupe.2G130600_v2.0.a1 Prupe.2G130700_v2.0.a1 Prupe.2G130900_v2.0.a1 Prupe.2G131000_v2.0.a1 Prupe.3G094800_v2.0.a1 Prupe.3G094900_v2.0.a1 Prupe.3G195900_v2.0.a1 Prupe.3G196000_v2.0.a1 Prupe.3G196000_v2.0.a1 Prupe.3G199200_v2.0.a1 Prupe.3G199200_v2.0.a1 Prupe.3G199400_v2.0.a1 Prupe.3G199500_v2.0.a1 Prupe.3G199900_v2.0.a1 Prupe.3G200000_v2.0.a1 Prupe.4G168900_v2.0.a1 Prupe.4G232400_v2.0.a1 Prupe.4G233100_v2.0.a1 Prupe.4G233100_v2.0.a1 Prupe.4G233200_v2.0.a1 Prupe.4G233600_v2.0.a1 Prupe.4G234000_v2.0.a1 Prupe.4G234200_v2.0.a1 Prupe.4G279000_v2.0.a1 Prupe.4G279000_v2.0.a1
pyrus_communis pycom01g13640 pycom05g05290 pycom05g05300 pycom05g05310 pycom05g05320 pycom07g05310 pycom07g05920 pycom07g09130 pycom07g09160 pycom07g09190 pycom07g09210 pycom09g04810 pycom09g04820 pycom09g04850 pycom09g04860 pycom09g04870 pycom09g04930 pycom09g04940 pycom09g04960 pycom09g04980 pycom11g17040 pycom11g17080 pycom11g17100 pycom17g10620 pycom17g10640 pycom17g10650 pycom17g10660
rosa_chinensis RchiOBHm_Chr1g0340311 RchiOBHm_Chr1g0340341 RchiOBHm_Chr1g0340351 RchiOBHm_Chr1g0340361 RchiOBHm_Chr1g0340411 RchiOBHm_Chr1g0340481 RchiOBHm_Chr1g0340521 RchiOBHm_Chr1g0340591 RchiOBHm_Chr1g0340631 RchiOBHm_Chr1g0340681 RchiOBHm_Chr1g0344431 RchiOBHm_Chr1g0346361 RchiOBHm_Chr1g0347011 RchiOBHm_Chr1g0347021 RchiOBHm_Chr1g0347031 RchiOBHm_Chr1g0347041 RchiOBHm_Chr1g0347561 RchiOBHm_Chr1g0347571 RchiOBHm_Chr1g0347811 RchiOBHm_Chr1g0347841 RchiOBHm_Chr1g0347861 RchiOBHm_Chr1g0348951 RchiOBHm_Chr1g0357511 RchiOBHm_Chr1g0367531 RchiOBHm_Chr1g0368411 RchiOBHm_Chr2g0154781 RchiOBHm_Chr2g0154841 RchiOBHm_Chr2g0155021 RchiOBHm_Chr2g0155091 RchiOBHm_Chr2g0155101 RchiOBHm_Chr2g0156211 RchiOBHm_Chr2g0156251 RchiOBHm_Chr2g0156281 RchiOBHm_Chr2g0156371 RchiOBHm_Chr2g0156381 RchiOBHm_Chr2g0156411 RchiOBHm_Chr2g0173751 RchiOBHm_Chr3g0494931 RchiOBHm_Chr4g0385161 RchiOBHm_Chr4g0385171 RchiOBHm_Chr4g0408231 RchiOBHm_Chr4g0408241 RchiOBHm_Chr5g0005251 RchiOBHm_Chr5g0030911 RchiOBHm_Chr5g0042831 RchiOBHm_Chr5g0042871 RchiOBHm_Chr5g0042881 RchiOBHm_Chr5g0043081 RchiOBHm_Chr5g0043131 RchiOBHm_Chr5g0043361 RchiOBHm_Chr5g0043371 RchiOBHm_Chr5g0043381 RchiOBHm_Chr5g0083391 RchiOBHm_Chr5g0083401 RchiOBHm_Chr5g0083441 RchiOBHm_Chr5g0083451 RchiOBHm_Chr5g0083461 RchiOBHm_Chr5g0083471 RchiOBHm_Chr5g0083501 RchiOBHm_Chr5g0083531 RchiOBHm_Chr5g0083601 RchiOBHm_Chr5g0083611 RchiOBHm_Chr5g0083651 RchiOBHm_Chr6g0257441 RchiOBHm_Chr6g0257601 RchiOBHm_Chr6g0257621 RchiOBHm_Chr6g0257631 RchiOBHm_Chr6g0263371 RchiOBHm_Chr6g0263391 RchiOBHm_Chr6g0263401 RchiOBHm_Chr6g0263411
rosa_laevigata RLG00000003361 RLG00000008615 RLG00000010252 RLG00000014349 RLG00000014351 RLG00000014359 RLG00000014696 RLG00000014706 RLG00000014711 RLG00000014712 RLG00000018865 RLG00000020803 RLG00000020804 RLG00000020808 RLG00000020811 RLG00000020812 RLG00000020816 RLG00000020817 RLG00000020818 RLG00000020896 RLG00000020902 RLG00000020904 RLG00000020905 RLG00000020906 RLG00000020907 RLG00000020908 RLG00000020909 RLG00000020910 RLG00000022216 RLG00000022218 RLG00000027211 RLG00000027212 RLG00000027213 RLG00000027214 RLG00000028474 RLG00000028475 RLG00000028613 RLG00000028708 RLG00000028709 RLG00000028737 RLG00000028738 RLG00000028764 RLG00000029010 RLG00000029012 RLG00000029019 RLG00000029022 RLG00000029025 RLG00000029027 RLG00000029031 RLG00000029035 RLG00000029141 RLG00000030130 RLG00000033005 RLG00000033271 RLG00000034150 RLG00000034153 RLG00000034158 RLG00000034160 RLG00000034164 RLG00000034166 RLG00000034167 RLG00000034183 RLG00000037034 RLG00000037035
rosa_multiflora Rmu_co8046282.1_g000001 Rmu_co8137732.1_g000001 Rmu_co8267491.1_g000001 Rmu_co8329695.1_g000001 Rmu_co8330005.1_g000001 Rmu_co8351095.1_g000001 Rmu_co8357797.1_g000001 Rmu_co8424479.1_g000001 Rmu_co8425575.1_g000001 Rmu_co8485497.1_g000001 Rmu_sc0000060.1_g000020 Rmu_sc0000260.1_g000009 Rmu_sc0000565.1_g000006 Rmu_sc0000566.1_g000023 Rmu_sc0000566.1_g000025 Rmu_sc0000566.1_g000031 Rmu_sc0000566.1_g000033 Rmu_sc0000566.1_g000036 Rmu_sc0000566.1_g000045 Rmu_sc0000566.1_g000048 Rmu_sc0000698.1_g000009 Rmu_sc0000698.1_g000031 Rmu_sc0000820.1_g000049 Rmu_sc0001099.1_g000008 Rmu_sc0001167.1_g000009 Rmu_sc0001167.1_g000070 Rmu_sc0001205.1_g000014 Rmu_sc0001444.1_g000008 Rmu_sc0001836.1_g000017 Rmu_sc0001836.1_g000021 Rmu_sc0001836.1_g000065 Rmu_sc0001974.1_g000014 Rmu_sc0002048.1_g000006 Rmu_sc0002048.1_g000018 Rmu_sc0002048.1_g000034 Rmu_sc0002079.1_g000008 Rmu_sc0002079.1_g000012 Rmu_sc0002079.1_g000034 Rmu_sc0002161.1_g000018 Rmu_sc0002245.1_g000018 Rmu_sc0002245.1_g000040 Rmu_sc0002538.1_g000004 Rmu_sc0002595.1_g000003 Rmu_sc0002595.1_g000004 Rmu_sc0002709.1_g000027 Rmu_sc0002709.1_g000043 Rmu_sc0003086.1_g000004 Rmu_sc0003188.1_g000002 Rmu_sc0003188.1_g000003 Rmu_sc0003301.1_g000003 Rmu_sc0003522.1_g000040 Rmu_sc0003785.1_g000004 Rmu_sc0003918.1_g000002 Rmu_sc0003918.1_g000015 Rmu_sc0004325.1_g000017 Rmu_sc0004355.1_g000007 Rmu_sc0004976.1_g000006 Rmu_sc0004976.1_g000010 Rmu_sc0004976.1_g000024 Rmu_sc0005144.1_g000016 Rmu_sc0005167.1_g000002 Rmu_sc0005451.1_g000002 Rmu_sc0006217.1_g000004 Rmu_sc0006908.1_g000027 Rmu_sc0008148.1_g000016 Rmu_sc0008148.1_g000044 Rmu_sc0008148.1_g000047 Rmu_sc0008734.1_g000012 Rmu_sc0008734.1_g000017 Rmu_sc0010137.1_g000014 Rmu_sc0010308.1_g000003 Rmu_sc0010719.1_g000001 Rmu_sc0014922.1_g000001 Rmu_sc0020148.1_g000001 Rmu_sc0024761.1_g000002 Rmu_sc0024761.1_g000003 Rmu_sc0027638.1_g000002 Rmu_sc0030439.1_g000001 Rmu_sc0033559.1_g000001 Rmu_sc0036789.1_g000001 Rmu_ssc0000173.1_g000015 Rmu_ssc0000245.1_g000025 Rmu_ssc0000342.1_g000001
rosa_roxburghii Rroxscaffold_1G00000980 Rroxscaffold_1G00000990 Rroxscaffold_1G00001050 Rroxscaffold_1G00001070 Rroxscaffold_1G00037490 Rroxscaffold_1G00037600 Rroxscaffold_1G00037640 Rroxscaffold_1G00037680 Rroxscaffold_1G00037700 Rroxscaffold_1G00037720 Rroxscaffold_1G00037780 Rroxscaffold_1G00037810 Rroxscaffold_2G00078660 Rroxscaffold_2G00093050 Rroxscaffold_2G00093070 Rroxscaffold_2G00093120 Rroxscaffold_2G00093140 Rroxscaffold_2G00093950 Rroxscaffold_2G00093980 Rroxscaffold_2G00093990 Rroxscaffold_2G00094050 Rroxscaffold_2G00094080 Rroxscaffold_2G00125300 Rroxscaffold_3G00218210 Rroxscaffold_4G00288530 Rroxscaffold_4G00288580 Rroxscaffold_4G00306260 Rroxscaffold_4G00306350 Rroxscaffold_4G00306420 Rroxscaffold_4G00307420 Rroxscaffold_4G00307660 Rroxscaffold_4G00307690 Rroxscaffold_4G00307720 Rroxscaffold_4G00311180 Rroxscaffold_4G00311220 Rroxscaffold_4G00311240 Rroxscaffold_4G00315940 Rroxscaffold_4G00315950 Rroxscaffold_5G00333080 Rroxscaffold_7G00208670 Rroxscaffold_7G00208690 Rroxscaffold_7G00208700 Rroxscaffold_7G00208710 Rroxscaffold_7G00208830 Rroxscaffold_7G00208840 Rroxscaffold_7G00208860
rosa_rugosa Rorug01G0052800 Rorug01G0052900 Rorug01G0084800 Rorug01G0162300.1 Rorug01G0162600.1 Rorug01G0162700.1 Rorug01G0163100.1 Rorug01G0163300.1 Rorug01G0163800.1 Rorug01G0163900.1 Rorug01G0164200.1 Rorug01G0164400.1 Rorug01G0187700 Rorug01G0187800 Rorug01G0189400 Rorug01G0189500 Rorug01G0189600 Rorug01G0189800 Rorug01G0190200 Rorug01G0190300 Rorug01G0198800 Rorug01G0341700 Rorug02G0445100 Rorug02G0445300 Rorug02G0445400 Rorug02G0452600 Rorug02G0452700 Rorug02G0452800 Rorug02G0453000 Rorug02G0522500 Rorug02G0572500 Rorug05G0203900 Rorug05G0204100 Rorug05G0204200 Rorug05G0204400 Rorug05G0205500 Rorug05G0205600 Rorug05G0484800 Rorug05G0484800 Rorug05G0484900 Rorug05G0570000 Rorug05G0570100 Rorug05G0570200 Rorug05G0570300.1 Rorug05G0570800 Rorug05G0570900 Rorug05G0572200 Rorug05G0572500
rosa_samantha Rh1AG178100 Rh1AG178500 Rh1AG178800 Rh1AG206800 Rh1AG207200 Rh1AG207700 Rh1AG348900 Rh2AG316000 Rh2BG522100 Rh2BG522400 Rh2BG530500 Rh2BG531000 Rh3AG317700 Rh4CG003500 Rh5AG289600 Rh5BG293800 Rh5BG294000 Rh5BG295500 Rh5BG296000 Rh5BG296300 Rh5BG297800 Rh5DG303900 Rh5DG305200 Rh5DG305500 Rh6AG126500
rosa_wichuraiana Rw0G002430 Rw0G013640 Rw1G014810 Rw1G014830 Rw1G014860 Rw1G014870 Rw1G014910 Rw1G017200 Rw1G017210 Rw1G017300 Rw1G017610 Rw1G017670 Rw1G017710 Rw1G017730 Rw1G018330 Rw1G018440 Rw1G031010 Rw1G031040 Rw1G031060 Rw2G042020 Rw2G042760 Rw2G042790 Rw2G042800 Rw2G053460 Rw2G053470 Rw4G000600 Rw5G019620 Rw5G027010 Rw5G049870 Rw5G050460 Rw5G050530 Rw6G007730 Rw6G007740 Rw6G007770 Rw6G007860 Rw6G010660 Rw6G010800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2133
Acc36I ACCTGC 1 cut(s) 985
AccI GTMKAC 2 cut(s) 2556, 2815
AccII CGCG 2 cut(s) 1955, 2462
AccIII TCCGGA 1 cut(s) 1648
AciI CCGC 2 cut(s) 1955, 2272
AclWI GGATC 8 cut(s) 127, 284, 332, 1873, 2459, 2581, 2709, 2725
AcoI YGGCCR 6 cut(s) 394, 592, 675, 873, 1126, 1711
AcuI CTGAAG 1 cut(s) 493
AfaI GTAC 8 cut(s) 201, 525, 763, 864, 1117, 1614, 1674, 2846
AfeI AGCGCT 1 cut(s) 233
AfiI CCNNNNNNNGG 4 cut(s) 1149, 1203, 1880, 2087
AflII CTTAAG 3 cut(s) 37, 1201, 2036
AflIII ACRYGT 1 cut(s) 1854
AhlI ACTAGT 1 cut(s) 551
AjnI CCWGG 4 cut(s) 1142, 1430, 1879, 2986
AloI GAACNNNNNNTCC 4 cut(s) 678, 710, 809, 841
Alw21I GWGCWC 3 cut(s) 2035, 2689, 2909
Alw26I GTCTC 4 cut(s) 984, 1187, 2660, 3059
AlwI GGATC 8 cut(s) 127, 284, 332, 1873, 2459, 2581, 2709, 2725
Aor13HI TCCGGA 1 cut(s) 1648
Aor51HI AGCGCT 1 cut(s) 233
ApeKI GCWGC 4 cut(s) 179, 381, 423, 3085
ArsI GACNNNNNNTTYG 4 cut(s) 1300, 1332, 1336, 1368
AseI ATTAAT 1 cut(s) 174
Asp700I GAANNNNTTC 2 cut(s) 2089, 2525
AspLEI GCGC 2 cut(s) 234, 1335
AspS9I GGNCC 4 cut(s) 1883, 1960, 2274, 2799
AsuC2I CCSGG 1 cut(s) 2592
AsuHPI GGTGA 3 cut(s) 781, 1292, 2525
AvaII GGWCC 3 cut(s) 1960, 2274, 2799
BaeGI GKGCMC 1 cut(s) 92
BalI TGGCCA 6 cut(s) 396, 594, 677, 875, 1128, 1713
BanII GRGCYC 1 cut(s) 2035
BbsI GAAGAC 4 cut(s) 573, 771, 791, 2949
Bbv12I GWGCWC 3 cut(s) 2035, 2689, 2909
BbvI GCAGC 4 cut(s) 166, 393, 435, 3097
BciT130I CCWGG 4 cut(s) 1144, 1432, 1881, 2988
BcnI CCSGG 1 cut(s) 2592
BcoDI GTCTC 4 cut(s) 984, 1187, 2660, 3059
BcuI ACTAGT 1 cut(s) 551
BfmI CTRYAG 1 cut(s) 2051
BfoI RGCGCY 1 cut(s) 235
BfrI CTTAAG 3 cut(s) 37, 1201, 2036
BfuAI ACCTGC 1 cut(s) 985
BglII AGATCT 1 cut(s) 1687
BisI GCNGC 4 cut(s) 180, 382, 424, 3086
BlsI GCNGC 4 cut(s) 181, 383, 425, 3087
BmcAI AGTACT 2 cut(s) 864, 1614
Bme1390I CCNGG 5 cut(s) 1144, 1432, 1881, 2592, 2988
Bme18I GGWCC 3 cut(s) 1960, 2274, 2799
BmgT120I GGNCC 4 cut(s) 1883, 1960, 2274, 2799
BmiI GGNNCC 5 cut(s) 439, 748, 1961, 2606, 2800
BmrFI CCNGG 5 cut(s) 1144, 1432, 1881, 2592, 2988
BmrI ACTGGG 2 cut(s) 824, 2730
BmsI GCATC 1 cut(s) 2410
BmuI ACTGGG 2 cut(s) 824, 2730
BpiI GAAGAC 4 cut(s) 573, 771, 791, 2949
BplI GAGNNNNNCTC 2 cut(s) 731, 763
Bpu10I CCTNAGC 1 cut(s) 2328
BpuEI CTTGAG 4 cut(s) 504, 1507, 2146, 2548
BpuMI CCSGG 1 cut(s) 2592
BsaAI YACGTR 1 cut(s) 2488
BsaI GGTCTC 3 cut(s) 984, 1187, 2660
BsaJI CCNNGG 9 cut(s) 344, 1084, 1369, 1430, 1817, 1823, 1880, 2590, 2848
BsaWI WCCGGW 2 cut(s) 1648, 1804
BsaXI ACNNNNNCTCC 2 cut(s) 340, 370
Bsc4I CCNNNNNNNGG 4 cut(s) 1149, 1203, 1880, 2087
Bse3DI GCAATG 2 cut(s) 1868, 2362
BseAI TCCGGA 1 cut(s) 1648
BseBI CCWGG 4 cut(s) 1144, 1432, 1881, 2988
BseDI CCNNGG 9 cut(s) 344, 1084, 1369, 1430, 1817, 1823, 1880, 2590, 2848
BseGI GGATG 4 cut(s) 373, 1409, 1734, 2658
BseLI CCNNNNNNNGG 4 cut(s) 1149, 1203, 1880, 2087
BseMI GCAATG 2 cut(s) 1868, 2362
BseMII CTCAG 6 cut(s) 2041, 2319, 2537, 2736, 2871, 2892
BseSI GKGCMC 1 cut(s) 92
BseXI GCAGC 4 cut(s) 166, 393, 435, 3097
BseYI CCCAGC 1 cut(s) 1071
BsgI GTGCAG 1 cut(s) 968
Bsh1236I CGCG 2 cut(s) 1955, 2462
BsiHKAI GWGCWC 3 cut(s) 2035, 2689, 2909
BsiSI CCGG 3 cut(s) 1649, 1805, 2592
BslFI GGGAC 3 cut(s) 912, 1551, 1973
BslI CCNNNNNNNGG 4 cut(s) 1149, 1203, 1880, 2087
BsmAI GTCTC 4 cut(s) 984, 1187, 2660, 3059
BsmFI GGGAC 3 cut(s) 912, 1551, 1973
BsmI GAATGC 3 cut(s) 383, 1022, 2407
Bso31I GGTCTC 3 cut(s) 984, 1187, 2660
Bsp1286I GDGCHC 4 cut(s) 92, 2035, 2689, 2909
Bsp13I TCCGGA 1 cut(s) 1648
Bsp1407I TGTACA 1 cut(s) 199
Bsp19I CCATGG 1 cut(s) 1817
BspACI CCGC 2 cut(s) 1955, 2272
BspCNI CTCAG 6 cut(s) 2040, 2320, 2538, 2735, 2870, 2893
BspEI TCCGGA 1 cut(s) 1648
BspFNI CGCG 2 cut(s) 1955, 2462
BspLI GGNNCC 5 cut(s) 439, 748, 1961, 2606, 2800
BspMAI CTGCAG 1 cut(s) 2055
BspMI ACCTGC 1 cut(s) 985
BspPI GGATC 8 cut(s) 127, 284, 332, 1873, 2459, 2581, 2709, 2725
BspTI CTTAAG 3 cut(s) 37, 1201, 2036
BspTNI GGTCTC 3 cut(s) 984, 1187, 2660
BsrDI GCAATG 2 cut(s) 1868, 2362
BsrGI TGTACA 1 cut(s) 199
BssECI CCNNGG 9 cut(s) 344, 1084, 1369, 1430, 1817, 1823, 1880, 2590, 2848
BssT1I CCWWGG 5 cut(s) 344, 1084, 1369, 1817, 2848
Bst2UI CCWGG 4 cut(s) 1144, 1432, 1881, 2988
Bst4CI ACNGT 5 cut(s) 356, 754, 896, 1115, 2497
Bst6I CTCTTC 3 cut(s) 2671, 3074, 3101
BstAFI CTTAAG 3 cut(s) 37, 1201, 2036
BstAUI TGTACA 1 cut(s) 199
BstBAI YACGTR 1 cut(s) 2488
BstC8I GCNNGC 3 cut(s) 184, 421, 2307
BstDSI CCRYGG 1 cut(s) 1817
BstENI CCTNNNNNAGG 1 cut(s) 2085
BstF5I GGATG 4 cut(s) 373, 1409, 1734, 2658
BstFNI CGCG 2 cut(s) 1955, 2462
BstH2I RGCGCY 1 cut(s) 235
BstHHI GCGC 2 cut(s) 234, 1335
BstMAI GTCTC 4 cut(s) 984, 1187, 2660, 3059
BstMWI GCNNNNNNNGC 2 cut(s) 1397, 2623
BstNI CCWGG 4 cut(s) 1144, 1432, 1881, 2988
BstNSI RCATGY 3 cut(s) 186, 810, 1858
BstSCI CCNGG 5 cut(s) 1142, 1430, 1879, 2590, 2986
BstSFI CTRYAG 1 cut(s) 2051
BstSLI GKGCMC 1 cut(s) 92
BstUI CGCG 2 cut(s) 1955, 2462
BstV1I GCAGC 4 cut(s) 166, 393, 435, 3097
BstV2I GAAGAC 4 cut(s) 573, 771, 791, 2949
BstX2I RGATCY 6 cut(s) 289, 337, 1687, 2586, 2701, 2730
BstXI CCANNNNNNTGG 3 cut(s) 392, 404, 1787
BstYI RGATCY 6 cut(s) 289, 337, 1687, 2586, 2701, 2730
BtgI CCRYGG 1 cut(s) 1817
BtsCI GGATG 4 cut(s) 373, 1409, 1734, 2658
BtsIMutI CAGTG 4 cut(s) 759, 2221, 2649, 2743
BveI ACCTGC 1 cut(s) 985
Cac8I GCNNGC 3 cut(s) 184, 421, 2307
CfoI GCGC 2 cut(s) 234, 1335
Cfr13I GGNCC 4 cut(s) 1883, 1960, 2274, 2799
CseI GACGC 2 cut(s) 1246, 1406
Csp6I GTAC 8 cut(s) 200, 524, 762, 863, 1116, 1613, 1673, 2845
CviQI GTAC 8 cut(s) 200, 524, 762, 863, 1116, 1613, 1673, 2845
EaeI YGGCCR 6 cut(s) 394, 592, 675, 873, 1126, 1711
Eam1104I CTCTTC 3 cut(s) 2671, 3074, 3101
EarI CTCTTC 3 cut(s) 2671, 3074, 3101
Ecl136II GAGCTC 1 cut(s) 2033
Eco130I CCWWGG 5 cut(s) 344, 1084, 1369, 1817, 2848
Eco24I GRGCYC 1 cut(s) 2035
Eco31I GGTCTC 3 cut(s) 984, 1187, 2660
Eco47I GGWCC 3 cut(s) 1960, 2274, 2799
Eco47III AGCGCT 1 cut(s) 233
Eco53kI GAGCTC 1 cut(s) 2033
Eco57I CTGAAG 1 cut(s) 493
EcoICRI GAGCTC 1 cut(s) 2033
EcoNI CCTNNNNNAGG 1 cut(s) 2085
EcoO109I RGGNCCY 1 cut(s) 1960
EcoRI GAATTC 3 cut(s) 134, 1502, 1735
EcoRII CCWGG 4 cut(s) 1142, 1430, 1879, 2986
EcoT14I CCWWGG 5 cut(s) 344, 1084, 1369, 1817, 2848
EcoT22I ATGCAT 1 cut(s) 2284
EcoT38I GRGCYC 1 cut(s) 2035
ErhI CCWWGG 5 cut(s) 344, 1084, 1369, 1817, 2848
FaqI GGGAC 3 cut(s) 912, 1551, 1973
FauI CCCGC 1 cut(s) 1948
FblI GTMKAC 2 cut(s) 2556, 2815
Fnu4HI GCNGC 4 cut(s) 180, 382, 424, 3086
FokI GGATG 4 cut(s) 380, 1416, 1741, 2645
FriOI GRGCYC 1 cut(s) 2035
Fsp4HI GCNGC 4 cut(s) 180, 382, 424, 3086
GlaI GCGC 2 cut(s) 233, 1334
GluI GCNGC 4 cut(s) 180, 382, 424, 3086
GsaI CCCAGC 1 cut(s) 1075
HaeII RGCGCY 1 cut(s) 235
HapII CCGG 3 cut(s) 1649, 1805, 2592
HgaI GACGC 2 cut(s) 1246, 1406
HhaI GCGC 2 cut(s) 234, 1335
Hin6I GCGC 2 cut(s) 232, 1333
HinP1I GCGC 2 cut(s) 232, 1333
HincII GTYRAC 2 cut(s) 954, 2816
HindII GTYRAC 2 cut(s) 954, 2816
HindIII AAGCTT 2 cut(s) 1604, 2926
HpaII CCGG 3 cut(s) 1649, 1805, 2592
HphI GGTGA 3 cut(s) 781, 1292, 2525
Hpy166II GTNNAC 4 cut(s) 954, 1673, 2557, 2816
Hpy8I GTNNAC 4 cut(s) 954, 1673, 2557, 2816
Hpy99I CGWCG 1 cut(s) 1115
HpyAV CCTTC 4 cut(s) 326, 812, 1004, 2233
HpyCH4III ACNGT 5 cut(s) 356, 754, 896, 1115, 2497
HpyCH4IV ACGT 2 cut(s) 399, 2487
HpyF10VI GCNNNNNNNGC 2 cut(s) 1397, 2623
HpySE526I ACGT 2 cut(s) 399, 2487
HspAI GCGC 2 cut(s) 232, 1333
Kpn2I TCCGGA 1 cut(s) 1648
LmnI GCTCC 1 cut(s) 752
Lsp1109I GCAGC 4 cut(s) 166, 393, 435, 3097
LweI GCATC 1 cut(s) 2410
MaeII ACGT 2 cut(s) 399, 2487
MaeIII GTNAC 9 cut(s) 350, 809, 878, 896, 1132, 1434, 1857, 2567, 2776
MfeI CAATTG 2 cut(s) 2163, 2170
MflI RGATCY 6 cut(s) 289, 337, 1687, 2586, 2701, 2730
MhlI GDGCHC 4 cut(s) 92, 2035, 2689, 2909
MlsI TGGCCA 6 cut(s) 396, 594, 677, 875, 1128, 1713
MluNI TGGCCA 6 cut(s) 396, 594, 677, 875, 1128, 1713
MlyI GAGTC 6 cut(s) 383, 668, 1469, 1841, 2939, 3108
MmeI TCCRAC 7 cut(s) 1086, 1131, 1135, 2406, 2661, 2679, 2992
Mox20I TGGCCA 6 cut(s) 396, 594, 677, 875, 1128, 1713
Mph1103I ATGCAT 1 cut(s) 2284
MroI TCCGGA 1 cut(s) 1648
MroXI GAANNNNTTC 2 cut(s) 2089, 2525
MscI TGGCCA 6 cut(s) 396, 594, 677, 875, 1128, 1713
MslI CAYNNNNRTG 3 cut(s) 127, 225, 729
Msp20I TGGCCA 6 cut(s) 396, 594, 677, 875, 1128, 1713
MspCI CTTAAG 3 cut(s) 37, 1201, 2036
MspI CCGG 3 cut(s) 1649, 1805, 2592
MspR9I CCNGG 5 cut(s) 1144, 1432, 1881, 2592, 2988
MunI CAATTG 2 cut(s) 2163, 2170
Mva1269I GAATGC 3 cut(s) 383, 1022, 2407
MvaI CCWGG 4 cut(s) 1144, 1432, 1881, 2988
MvnI CGCG 2 cut(s) 1955, 2462
MwoI GCNNNNNNNGC 2 cut(s) 1397, 2623
NciI CCSGG 1 cut(s) 2592
NcoI CCATGG 1 cut(s) 1817
NlaIV GGNNCC 5 cut(s) 439, 748, 1961, 2606, 2800
NmeAIII GCCGAG 2 cut(s) 1216, 3114
NmuCI GTSAC 1 cut(s) 1434
NsiI ATGCAT 1 cut(s) 2284
NspI RCATGY 3 cut(s) 186, 810, 1858
PaeI GCATGC 1 cut(s) 186
PciI ACATGT 1 cut(s) 1854
PctI GAATGC 3 cut(s) 383, 1022, 2407
PdmI GAANNNNTTC 2 cut(s) 2089, 2525
PfeI GAWTC 6 cut(s) 1139, 2005, 2023, 2550, 2693, 2897
PkrI GCNGC 4 cut(s) 181, 383, 425, 3087
PleI GAGTC 6 cut(s) 383, 667, 1469, 1841, 2939, 3108
PpsI GAGTC 6 cut(s) 383, 667, 1469, 1841, 2939, 3108
Ppu21I YACGTR 1 cut(s) 2488
PpuMI RGGWCCY 1 cut(s) 1960
PscI ACATGT 1 cut(s) 1854
PshBI ATTAAT 1 cut(s) 174
PsiI TTATAA 1 cut(s) 2133
Psp124BI GAGCTC 1 cut(s) 2035
Psp5II RGGWCCY 1 cut(s) 1960
Psp6I CCWGG 4 cut(s) 1142, 1430, 1879, 2986
PspFI CCCAGC 1 cut(s) 1071
PspGI CCWGG 4 cut(s) 1142, 1430, 1879, 2986
PspN4I GGNNCC 5 cut(s) 439, 748, 1961, 2606, 2800
PspPI GGNCC 4 cut(s) 1883, 1960, 2274, 2799
PspPPI RGGWCCY 1 cut(s) 1960
PsrI GAACNNNNNNTAC 2 cut(s) 343, 375
PstI CTGCAG 1 cut(s) 2055
PsuI RGATCY 6 cut(s) 289, 337, 1687, 2586, 2701, 2730
RsaI GTAC 8 cut(s) 201, 525, 763, 864, 1117, 1614, 1674, 2846
RsaNI GTAC 8 cut(s) 200, 524, 762, 863, 1116, 1613, 1673, 2845
RseI CAYNNNNRTG 3 cut(s) 127, 225, 729
SacI GAGCTC 1 cut(s) 2035
SalI GTCGAC 1 cut(s) 2814
SatI GCNGC 4 cut(s) 180, 382, 424, 3086
Sau96I GGNCC 4 cut(s) 1883, 1960, 2274, 2799
ScaI AGTACT 2 cut(s) 864, 1614
SchI GAGTC 6 cut(s) 383, 668, 1469, 1841, 2939, 3108
ScrFI CCNGG 5 cut(s) 1144, 1432, 1881, 2592, 2988
SduI GDGCHC 4 cut(s) 92, 2035, 2689, 2909
SfaNI GCATC 1 cut(s) 2410
SfcI CTRYAG 1 cut(s) 2051
SinI GGWCC 3 cut(s) 1960, 2274, 2799
SmiMI CAYNNNNRTG 3 cut(s) 127, 225, 729
SmlI CTYRAG 7 cut(s) 37, 519, 1201, 1486, 2036, 2125, 2563
SmoI CTYRAG 7 cut(s) 37, 519, 1201, 1486, 2036, 2125, 2563
SpeI ACTAGT 1 cut(s) 551
SphI GCATGC 1 cut(s) 186
SsiI CCGC 2 cut(s) 1955, 2272
SspI AATATT 1 cut(s) 939
SstI GAGCTC 1 cut(s) 2035
StyD4I CCNGG 5 cut(s) 1142, 1430, 1879, 2590, 2986
StyI CCWWGG 5 cut(s) 344, 1084, 1369, 1817, 2848
TaaI ACNGT 5 cut(s) 356, 754, 896, 1115, 2497
TaiI ACGT 2 cut(s) 402, 2490
TaqI TCGA 8 cut(s) 867, 1319, 1443, 1473, 1506, 1550, 2083, 2815
TatI WGTACW 5 cut(s) 199, 761, 862, 1612, 1672
TfiI GAWTC 6 cut(s) 1139, 2005, 2023, 2550, 2693, 2897
TscAI CASTG 4 cut(s) 759, 2221, 2656, 2743
TseFI GTSAC 1 cut(s) 1434
TseI GCWGC 4 cut(s) 179, 381, 423, 3085
Tsp45I GTSAC 1 cut(s) 1434
TspGWI ACGGA 3 cut(s) 125, 785, 2595
TspRI CASTG 4 cut(s) 759, 2221, 2656, 2743
Vha464I CTTAAG 3 cut(s) 37, 1201, 2036
VpaK11BI GGWCC 3 cut(s) 1960, 2274, 2799
VspI ATTAAT 1 cut(s) 174
XagI CCTNNNNNAGG 1 cut(s) 2085
XbaI TCTAGA 1 cut(s) 1684
XceI RCATGY 3 cut(s) 186, 810, 1858
XcmI CCANNNNNNNNNTGG 1 cut(s) 1728
XmiI GTMKAC 2 cut(s) 2556, 2815
XmnI GAANNNNTTC 2 cut(s) 2089, 2525
ZrmI AGTACT 2 cut(s) 864, 1614
Zsp2I ATGCAT 1 cut(s) 2284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.