regulation of response to stimulus
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 630, 1814 |
| AccBSI | CCGCTC | 1 cut(s) | 1543 |
| AccII | CGCG | 1 cut(s) | 592 |
| AciI | CCGC | 9 cut(s) | 314, 348, 543, 592, 878, 1532, 1541, 1984, 2526 |
| AcsI | RAATTY | 7 cut(s) | 118, 645, 740, 1379, 1477, 1928, 2244 |
| AfaI | GTAC | 3 cut(s) | 845, 885, 2648 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 188, 284, 1221, 1958 |
| AflII | CTTAAG | 3 cut(s) | 1168, 1495, 2339 |
| AflIII | ACRYGT | 1 cut(s) | 2433 |
| AjnI | CCWGG | 1 cut(s) | 1269 |
| AleI | CACNNNNGTG | 1 cut(s) | 1065 |
| Alw21I | GWGCWC | 2 cut(s) | 1131, 1418 |
| Alw26I | GTCTC | 6 cut(s) | 154, 483, 1178, 1812, 2267, 2442 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2742 |
| AoxI | GGCC | 2 cut(s) | 2311, 2398 |
| ApeKI | GCWGC | 2 cut(s) | 1798, 1981 |
| ApoI | RAATTY | 7 cut(s) | 118, 645, 740, 1379, 1477, 1928, 2244 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 750, 782, 1562, 1594 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 860 |
| AspA2I | CCTAGG | 1 cut(s) | 1063 |
| AspLEI | GCGC | 1 cut(s) | 592 |
| AspS9I | GGNCC | 6 cut(s) | 206, 1658, 1846, 1937, 1961, 2406 |
| AsuHPI | GGTGA | 8 cut(s) | 415, 709, 1079, 1229, 1645, 2120, 2125, 2468 |
| AsuII | TTCGAA | 1 cut(s) | 1080 |
| AsuNHI | GCTAGC | 1 cut(s) | 2713 |
| AvaII | GGWCC | 6 cut(s) | 206, 1658, 1846, 1937, 1961, 2406 |
| AvrII | CCTAGG | 1 cut(s) | 1063 |
| AxyI | CCTNAGG | 1 cut(s) | 2402 |
| BaeGI | GKGCMC | 1 cut(s) | 1528 |
| BanII | GRGCYC | 2 cut(s) | 1131, 1418 |
| BauI | CACGAG | 1 cut(s) | 255 |
| BbsI | GAAGAC | 2 cut(s) | 866, 1312 |
| Bbv12I | GWGCWC | 2 cut(s) | 1131, 1418 |
| BbvCI | CCTCAGC | 1 cut(s) | 2203 |
| BbvI | GCAGC | 2 cut(s) | 1785, 1968 |
| BccI | CCATC | 2 cut(s) | 1270, 2341 |
| BciT130I | CCWGG | 1 cut(s) | 1271 |
| BciVI | GTATCC | 3 cut(s) | 1498, 1741, 1980 |
| BcoDI | GTCTC | 6 cut(s) | 154, 483, 1178, 1812, 2267, 2442 |
| BfaI | CTAG | 7 cut(s) | 761, 1049, 1064, 1094, 1236, 2357, 2714 |
| BfmI | CTRYAG | 2 cut(s) | 1829, 2148 |
| BfrI | CTTAAG | 3 cut(s) | 1168, 1495, 2339 |
| BfuI | GTATCC | 3 cut(s) | 1498, 1741, 1980 |
| BglII | AGATCT | 2 cut(s) | 1491, 2080 |
| BisI | GCNGC | 2 cut(s) | 1799, 1982 |
| BlnI | CCTAGG | 1 cut(s) | 1063 |
| BlpI | GCTNAGC | 1 cut(s) | 1822 |
| BlsI | GCNGC | 2 cut(s) | 1800, 1983 |
| Bme1390I | CCNGG | 1 cut(s) | 1271 |
| Bme18I | GGWCC | 6 cut(s) | 206, 1658, 1846, 1937, 1961, 2406 |
| BmgT120I | GGNCC | 6 cut(s) | 206, 1658, 1846, 1937, 1961, 2406 |
| BmiI | GGNNCC | 3 cut(s) | 208, 1400, 2408 |
| BmrFI | CCNGG | 1 cut(s) | 1271 |
| BmrI | ACTGGG | 2 cut(s) | 823, 2493 |
| BmsI | GCATC | 3 cut(s) | 312, 1543, 2066 |
| BmtI | GCTAGC | 1 cut(s) | 2717 |
| BmuI | ACTGGG | 2 cut(s) | 823, 2493 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1170 |
| BpiI | GAAGAC | 2 cut(s) | 866, 1312 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1088, 1120, 1390, 1422 |
| BpmI | CTGGAG | 1 cut(s) | 2012 |
| Bpu10I | CCTNAGC | 3 cut(s) | 530, 1977, 2203 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1822 |
| Bpu14I | TTCGAA | 1 cut(s) | 1080 |
| BpuEI | CTTGAG | 1 cut(s) | 1868 |
| Bsa29I | ATCGAT | 1 cut(s) | 1783 |
| BsaAI | YACGTR | 1 cut(s) | 2428 |
| BsaI | GGTCTC | 2 cut(s) | 1812, 2267 |
| BsaJI | CCNNGG | 5 cut(s) | 278, 306, 1063, 1269, 1802 |
| BsaWI | WCCGGW | 3 cut(s) | 1214, 1655, 2015 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 410, 440, 704, 734 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 188, 284, 1221, 1958 |
| Bse1I | ACTGG | 8 cut(s) | 379, 577, 829, 871, 1450, 1995, 2488, 2630 |
| Bse21I | CCTNAGG | 1 cut(s) | 2402 |
| Bse3DI | GCAATG | 1 cut(s) | 1291 |
| BseBI | CCWGG | 1 cut(s) | 1271 |
| BseCI | ATCGAT | 1 cut(s) | 1783 |
| BseDI | CCNNGG | 5 cut(s) | 278, 306, 1063, 1269, 1802 |
| BseGI | GGATG | 2 cut(s) | 778, 2578 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 188, 284, 1221, 1958 |
| BseMI | GCAATG | 1 cut(s) | 1291 |
| BseNI | ACTGG | 8 cut(s) | 379, 577, 829, 871, 1450, 1995, 2488, 2630 |
| BseRI | GAGGAG | 6 cut(s) | 418, 712, 1171, 1193, 1904, 1938 |
| BseSI | GKGCMC | 1 cut(s) | 1528 |
| BseXI | GCAGC | 2 cut(s) | 1785, 1968 |
| BsgI | GTGCAG | 1 cut(s) | 1508 |
| Bsh1236I | CGCG | 1 cut(s) | 592 |
| BshFI | GGCC | 2 cut(s) | 2313, 2400 |
| BshVI | ATCGAT | 1 cut(s) | 1783 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1131, 1418 |
| BsiSI | CCGG | 3 cut(s) | 1215, 1656, 2016 |
| BslFI | GGGAC | 3 cut(s) | 192, 2398, 2569 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 188, 284, 1221, 1958 |
| BsmAI | GTCTC | 6 cut(s) | 154, 483, 1178, 1812, 2267, 2442 |
| BsmFI | GGGAC | 3 cut(s) | 192, 2398, 2569 |
| BsmI | GAATGC | 1 cut(s) | 459 |
| BsnI | GGCC | 2 cut(s) | 2313, 2400 |
| Bso31I | GGTCTC | 2 cut(s) | 1812, 2267 |
| Bsp119I | TTCGAA | 1 cut(s) | 1080 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1131, 1418, 1528 |
| Bsp1407I | TGTACA | 1 cut(s) | 883 |
| Bsp143I | GATC | 5 cut(s) | 1207, 1491, 1633, 2080, 2277 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1822 |
| BspACI | CCGC | 9 cut(s) | 314, 348, 543, 592, 878, 1532, 1541, 1984, 2526 |
| BspANI | GGCC | 2 cut(s) | 2313, 2400 |
| BspDI | ATCGAT | 1 cut(s) | 1783 |
| BspFNI | CGCG | 1 cut(s) | 592 |
| BspLI | GGNNCC | 3 cut(s) | 208, 1400, 2408 |
| BspOI | GCTAGC | 1 cut(s) | 2717 |
| BspT104I | TTCGAA | 1 cut(s) | 1080 |
| BspTI | CTTAAG | 3 cut(s) | 1168, 1495, 2339 |
| BspTNI | GGTCTC | 2 cut(s) | 1812, 2267 |
| BsrBI | CCGCTC | 1 cut(s) | 1543 |
| BsrDI | GCAATG | 1 cut(s) | 1291 |
| BsrGI | TGTACA | 1 cut(s) | 883 |
| BsrI | ACTGG | 8 cut(s) | 379, 577, 829, 871, 1450, 1995, 2488, 2630 |
| BssECI | CCNNGG | 5 cut(s) | 278, 306, 1063, 1269, 1802 |
| BssMI | GATC | 5 cut(s) | 1207, 1491, 1633, 2080, 2277 |
| BssSI | CACGAG | 1 cut(s) | 255 |
| BssT1I | CCWWGG | 3 cut(s) | 278, 1063, 1802 |
| Bst2BI | CACGAG | 1 cut(s) | 255 |
| Bst2UI | CCWGG | 1 cut(s) | 1271 |
| Bst4CI | ACNGT | 6 cut(s) | 368, 1010, 1514, 1761, 1833, 2744 |
| Bst6I | CTCTTC | 6 cut(s) | 436, 730, 962, 1181, 2541, 2592 |
| BstAFI | CTTAAG | 3 cut(s) | 1168, 1495, 2339 |
| BstAUI | TGTACA | 1 cut(s) | 883 |
| BstBAI | YACGTR | 1 cut(s) | 2428 |
| BstBI | TTCGAA | 1 cut(s) | 1080 |
| BstC8I | GCNNGC | 5 cut(s) | 262, 536, 605, 1619, 2715 |
| BstDSI | CCRYGG | 1 cut(s) | 306 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1956 |
| BstF5I | GGATG | 2 cut(s) | 778, 2578 |
| BstFNI | CGCG | 1 cut(s) | 592 |
| BstHHI | GCGC | 1 cut(s) | 592 |
| BstKTI | GATC | 5 cut(s) | 1210, 1494, 1636, 2083, 2280 |
| BstMAI | GTCTC | 6 cut(s) | 154, 483, 1178, 1812, 2267, 2442 |
| BstMBI | GATC | 5 cut(s) | 1207, 1491, 1633, 2080, 2277 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1288, 1540, 2279 |
| BstNI | CCWGG | 1 cut(s) | 1271 |
| BstNSI | RCATGY | 2 cut(s) | 342, 538 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1170 |
| BstSCI | CCNGG | 1 cut(s) | 1269 |
| BstSFI | CTRYAG | 2 cut(s) | 1829, 2148 |
| BstSLI | GKGCMC | 1 cut(s) | 1528 |
| BstUI | CGCG | 1 cut(s) | 592 |
| BstV1I | GCAGC | 2 cut(s) | 1785, 1968 |
| BstV2I | GAAGAC | 2 cut(s) | 866, 1312 |
| BstX2I | RGATCY | 2 cut(s) | 1491, 2080 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 866, 2453 |
| BstYI | RGATCY | 2 cut(s) | 1491, 2080 |
| Bsu15I | ATCGAT | 1 cut(s) | 1783 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2402 |
| BsuI | GTATCC | 3 cut(s) | 1498, 1741, 1980 |
| BsuRI | GGCC | 2 cut(s) | 2313, 2400 |
| BsuTUI | ATCGAT | 1 cut(s) | 1783 |
| BtgI | CCRYGG | 1 cut(s) | 306 |
| BtgZI | GCGATG | 1 cut(s) | 312 |
| BtsCI | GGATG | 2 cut(s) | 778, 2578 |
| BtsI | GCAGTG | 1 cut(s) | 2640 |
| BtsIMutI | CAGTG | 8 cut(s) | 570, 864, 1309, 1378, 1425, 1491, 2273, 2640 |
| Cac8I | GCNNGC | 5 cut(s) | 262, 536, 605, 1619, 2715 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2742 |
| CfoI | GCGC | 1 cut(s) | 592 |
| Cfr13I | GGNCC | 6 cut(s) | 206, 1658, 1846, 1937, 1961, 2406 |
| ClaI | ATCGAT | 1 cut(s) | 1783 |
| Csp6I | GTAC | 3 cut(s) | 844, 884, 2647 |
| CviAII | CATG | 4 cut(s) | 94, 339, 535, 1671 |
| CviQI | GTAC | 3 cut(s) | 844, 884, 2647 |
| DpnI | GATC | 5 cut(s) | 1209, 1493, 1635, 2082, 2279 |
| DpnII | GATC | 5 cut(s) | 1207, 1491, 1633, 2080, 2277 |
| Eam1104I | CTCTTC | 6 cut(s) | 436, 730, 962, 1181, 2541, 2592 |
| EarI | CTCTTC | 6 cut(s) | 436, 730, 962, 1181, 2541, 2592 |
| EciI | GGCGGA | 1 cut(s) | 532 |
| Ecl136II | GAGCTC | 2 cut(s) | 1129, 1416 |
| Eco130I | CCWWGG | 3 cut(s) | 278, 1063, 1802 |
| Eco24I | GRGCYC | 2 cut(s) | 1131, 1418 |
| Eco31I | GGTCTC | 2 cut(s) | 1812, 2267 |
| Eco32I | GATATC | 1 cut(s) | 1227 |
| Eco47I | GGWCC | 6 cut(s) | 206, 1658, 1846, 1937, 1961, 2406 |
| Eco53kI | GAGCTC | 2 cut(s) | 1129, 1416 |
| Eco81I | CCTNAGG | 1 cut(s) | 2402 |
| EcoICRI | GAGCTC | 2 cut(s) | 1129, 1416 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1956 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1961, 2406 |
| EcoRII | CCWGG | 1 cut(s) | 1269 |
| EcoRV | GATATC | 1 cut(s) | 1227 |
| EcoT14I | CCWWGG | 3 cut(s) | 278, 1063, 1802 |
| EcoT38I | GRGCYC | 2 cut(s) | 1131, 1418 |
| ErhI | CCWWGG | 3 cut(s) | 278, 1063, 1802 |
| FaeI | CATG | 4 cut(s) | 97, 342, 538, 1674 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1697, 1729 |
| FaqI | GGGAC | 3 cut(s) | 192, 2398, 2569 |
| FatI | CATG | 4 cut(s) | 93, 338, 534, 1670 |
| FauI | CCCGC | 1 cut(s) | 1539 |
| Fnu4HI | GCNGC | 2 cut(s) | 1799, 1982 |
| FokI | GGATG | 2 cut(s) | 785, 2565 |
| FriOI | GRGCYC | 2 cut(s) | 1131, 1418 |
| Fsp4HI | GCNGC | 2 cut(s) | 1799, 1982 |
| FspBI | CTAG | 7 cut(s) | 761, 1049, 1064, 1094, 1236, 2357, 2714 |
| GlaI | GCGC | 1 cut(s) | 591 |
| GluI | GCNGC | 2 cut(s) | 1799, 1982 |
| GsuI | CTGGAG | 1 cut(s) | 2012 |
| HaeIII | GGCC | 2 cut(s) | 2313, 2400 |
| HapII | CCGG | 3 cut(s) | 1215, 1656, 2016 |
| HhaI | GCGC | 1 cut(s) | 592 |
| Hin1II | CATG | 4 cut(s) | 97, 342, 538, 1674 |
| Hin6I | GCGC | 1 cut(s) | 590 |
| HinP1I | GCGC | 1 cut(s) | 590 |
| HincII | GTYRAC | 2 cut(s) | 834, 1443 |
| HindII | GTYRAC | 2 cut(s) | 834, 1443 |
| HindIII | AAGCTT | 2 cut(s) | 160, 2020 |
| HpaI | GTTAAC | 2 cut(s) | 834, 1443 |
| HpaII | CCGG | 3 cut(s) | 1215, 1656, 2016 |
| HphI | GGTGA | 8 cut(s) | 415, 709, 1079, 1229, 1645, 2120, 2125, 2468 |
| Hpy166II | GTNNAC | 4 cut(s) | 834, 1443, 1846, 2431 |
| Hpy188I | TCNGA | 9 cut(s) | 100, 357, 611, 1413, 1465, 1583, 1677, 1703, 2035 |
| Hpy8I | GTNNAC | 4 cut(s) | 834, 1443, 1846, 2431 |
| Hpy99I | CGWCG | 1 cut(s) | 1772 |
| HpyCH4III | ACNGT | 6 cut(s) | 368, 1010, 1514, 1761, 1833, 2744 |
| HpyCH4IV | ACGT | 5 cut(s) | 1317, 1770, 2190, 2427, 2433 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 264, 679, 1060, 1489, 1565, 1903, 2516 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1288, 1540, 2279 |
| HpySE526I | ACGT | 5 cut(s) | 1317, 1770, 2190, 2427, 2433 |
| Hsp92II | CATG | 4 cut(s) | 97, 342, 538, 1674 |
| HspAI | GCGC | 1 cut(s) | 590 |
| KspAI | GTTAAC | 2 cut(s) | 834, 1443 |
| Kzo9I | GATC | 5 cut(s) | 1207, 1491, 1633, 2080, 2277 |
| LmnI | GCTCC | 4 cut(s) | 1206, 1288, 1398, 2179 |
| Lsp1109I | GCAGC | 2 cut(s) | 1785, 1968 |
| LweI | GCATC | 3 cut(s) | 312, 1543, 2066 |
| MaeI | CTAG | 7 cut(s) | 761, 1049, 1064, 1094, 1236, 2357, 2714 |
| MaeII | ACGT | 5 cut(s) | 1317, 1770, 2190, 2427, 2433 |
| MalI | GATC | 5 cut(s) | 1209, 1493, 1635, 2082, 2279 |
| MbiI | CCGCTC | 1 cut(s) | 1543 |
| MboI | GATC | 5 cut(s) | 1207, 1491, 1633, 2080, 2277 |
| MfeI | CAATTG | 2 cut(s) | 1014, 1161 |
| MflI | RGATCY | 2 cut(s) | 1491, 2080 |
| MhlI | GDGCHC | 3 cut(s) | 1131, 1418, 1528 |
| MlyI | GAGTC | 2 cut(s) | 296, 2360 |
| MmeI | TCCRAC | 1 cut(s) | 1383 |
| MroXI | GAANNNNTTC | 1 cut(s) | 860 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1065 |
| MspCI | CTTAAG | 3 cut(s) | 1168, 1495, 2339 |
| MspI | CCGG | 3 cut(s) | 1215, 1656, 2016 |
| MspR9I | CCNGG | 1 cut(s) | 1271 |
| MunI | CAATTG | 2 cut(s) | 1014, 1161 |
| Mva1269I | GAATGC | 1 cut(s) | 459 |
| MvaI | CCWGG | 1 cut(s) | 1271 |
| MvnI | CGCG | 1 cut(s) | 592 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1288, 1540, 2279 |
| NdeII | GATC | 5 cut(s) | 1207, 1491, 1633, 2080, 2277 |
| NheI | GCTAGC | 1 cut(s) | 2713 |
| NlaIII | CATG | 4 cut(s) | 97, 342, 538, 1674 |
| NlaIV | GGNNCC | 3 cut(s) | 208, 1400, 2408 |
| NmuCI | GTSAC | 4 cut(s) | 272, 316, 1761, 2352 |
| NspI | RCATGY | 2 cut(s) | 342, 538 |
| NspV | TTCGAA | 1 cut(s) | 1080 |
| OliI | CACNNNNGTG | 1 cut(s) | 1065 |
| PaeI | GCATGC | 1 cut(s) | 538 |
| PctI | GAATGC | 1 cut(s) | 459 |
| PdmI | GAANNNNTTC | 1 cut(s) | 860 |
| PfeI | GAWTC | 8 cut(s) | 217, 595, 652, 1250, 1368, 1578, 1857, 2252 |
| PkrI | GCNGC | 2 cut(s) | 1800, 1983 |
| PleI | GAGTC | 2 cut(s) | 296, 2359 |
| PpsI | GAGTC | 2 cut(s) | 296, 2359 |
| Ppu21I | YACGTR | 1 cut(s) | 2428 |
| PpuMI | RGGWCCY | 2 cut(s) | 1961, 2406 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1170 |
| PsiI | TTATAA | 2 cut(s) | 630, 1814 |
| Psp124BI | GAGCTC | 2 cut(s) | 1131, 1418 |
| Psp5II | RGGWCCY | 2 cut(s) | 1961, 2406 |
| Psp6I | CCWGG | 1 cut(s) | 1269 |
| PspGI | CCWGG | 1 cut(s) | 1269 |
| PspN4I | GGNNCC | 3 cut(s) | 208, 1400, 2408 |
| PspPI | GGNCC | 6 cut(s) | 206, 1658, 1846, 1937, 1961, 2406 |
| PspPPI | RGGWCCY | 2 cut(s) | 1961, 2406 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2742 |
| PsuI | RGATCY | 2 cut(s) | 1491, 2080 |
| RsaI | GTAC | 3 cut(s) | 845, 885, 2648 |
| RsaNI | GTAC | 3 cut(s) | 844, 884, 2647 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1065 |
| SacI | GAGCTC | 2 cut(s) | 1131, 1418 |
| SatI | GCNGC | 2 cut(s) | 1799, 1982 |
| Sau3AI | GATC | 5 cut(s) | 1207, 1491, 1633, 2080, 2277 |
| Sau96I | GGNCC | 6 cut(s) | 206, 1658, 1846, 1937, 1961, 2406 |
| SchI | GAGTC | 2 cut(s) | 296, 2360 |
| ScrFI | CCNGG | 1 cut(s) | 1271 |
| SduI | GDGCHC | 3 cut(s) | 1131, 1418, 1528 |
| SfaNI | GCATC | 3 cut(s) | 312, 1543, 2066 |
| SfcI | CTRYAG | 2 cut(s) | 1829, 2148 |
| SfuI | TTCGAA | 1 cut(s) | 1080 |
| SinI | GGWCC | 6 cut(s) | 206, 1658, 1846, 1937, 1961, 2406 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1065 |
| SmlI | CTYRAG | 4 cut(s) | 1168, 1495, 1883, 2339 |
| SmoI | CTYRAG | 4 cut(s) | 1168, 1495, 1883, 2339 |
| SphI | GCATGC | 1 cut(s) | 538 |
| SsiI | CCGC | 9 cut(s) | 314, 348, 543, 592, 878, 1532, 1541, 1984, 2526 |
| SspMI | CTAG | 7 cut(s) | 761, 1049, 1064, 1094, 1236, 2357, 2714 |
| SstI | GAGCTC | 2 cut(s) | 1131, 1418 |
| StyD4I | CCNGG | 1 cut(s) | 1269 |
| StyI | CCWWGG | 3 cut(s) | 278, 1063, 1802 |
| TaaI | ACNGT | 6 cut(s) | 368, 1010, 1514, 1761, 1833, 2744 |
| TaiI | ACGT | 5 cut(s) | 1320, 1773, 2193, 2430, 2436 |
| TaqI | TCGA | 6 cut(s) | 1080, 1131, 1206, 1767, 1783, 2294 |
| TaqII | GACCGA | 1 cut(s) | 785 |
| TatI | WGTACW | 1 cut(s) | 883 |
| TfiI | GAWTC | 8 cut(s) | 217, 595, 652, 1250, 1368, 1578, 1857, 2252 |
| TscAI | CASTG | 8 cut(s) | 577, 871, 1309, 1378, 1425, 1491, 2280, 2640 |
| TseFI | GTSAC | 4 cut(s) | 272, 316, 1761, 2352 |
| TseI | GCWGC | 2 cut(s) | 1798, 1981 |
| Tsp45I | GTSAC | 4 cut(s) | 272, 316, 1761, 2352 |
| TspGWI | ACGGA | 4 cut(s) | 383, 692, 1869, 2664 |
| TspRI | CASTG | 8 cut(s) | 577, 871, 1309, 1378, 1425, 1491, 2280, 2640 |
| Vha464I | CTTAAG | 3 cut(s) | 1168, 1495, 2339 |
| VpaK11BI | GGWCC | 6 cut(s) | 206, 1658, 1846, 1937, 1961, 2406 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1956 |
| XapI | RAATTY | 7 cut(s) | 118, 645, 740, 1379, 1477, 1928, 2244 |
| XceI | RCATGY | 2 cut(s) | 342, 538 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1392 |
| XmaJI | CCTAGG | 1 cut(s) | 1063 |
| XmnI | GAANNNNTTC | 1 cut(s) | 860 |
| XspI | CTAG | 7 cut(s) | 761, 1049, 1064, 1094, 1236, 2357, 2714 |