RchiOBHm_Chr2g0155021

Leucine rich repeat N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000024
Physical Location & Seq
Forward (+)
72055026 .. 72058037
3012 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52394

Sequence Viewer

Length: 3012 bp
ATGGGATCATCTTTGTGGGAATTCTTTTCTGTGCGTTATATTATACTCTTATTGCTCATTAATGCTGCATGCTGTTTTTCTTTTGTACAAACGCAGACACTTTGCCACGATGATGAGCGCTCTGCCTTGTTGCAATTCAAAGCTAGTTTCACGATAAACAAGTCTGCTTCCCAAGATCCCTTTGCTTATCCGAAAGTTGCATATTGGGGTAGGTTAGAAGGAGATCCTCCAAGGAGTAACTGTTGTTCATGGGATGGTGTTGAATGCAGCCACGACTCTGGCCATGTTATTGGCCTTGACCTCGCCAGCAGCTATCTTCATGGTTCCATCAACTCCAATAGCAGTCTTTTTCAACTTGTTCAGTTGCAGAGGCTTGACCTCTCCGACAACAACTTCAGCTACTCTCAAGTACCATCTAGGTTAGGCCATGATCTTACTAGTCTAACATATCTCAACCTATCCATGTCTTCTTTTTCTGGCCAAATTCCATCAGAAATTTCATATCTATCCAAGCTGTCTGCCCTTGATCTGTCTTCTACTTACAAGTCCCATCTCAAAATGACCAACTTCGGAAGCCTAGTTCAAAACTTGACCAACATAAAGCAGCTTCATCTTAGTTTGGTAGAGATAGGCTCCACAGTGCCTAATACATTGGTGAATGTGTCTTCTCTCACGTCTCTCCGTCTTCAAGCATGTAACTTGGAGGGGCAATTCCCAGTAGGCATTTTCCACCTACCAAATTTGCAAGTACTTGATTTGGCCTATAACAGCTATCTAACCGGTTACTTTCCTGAAGAGCTTAACAAGAGCAGTCCCTTGAAGATATTGATTTTGCAGTCAACCAATTTCTCTGGTCATCTACCTGCTTCAATCGGAGACCTTCCTGCCTTAAATTTGTTGAACATAGCATTCTGTCGGTTTTATCCCCATATTCCATCTTCACTCTCCAACCTTACCCAGCTCAATTTCCTTGGTCTTTCTTCCTTTTTTTCCAACGACGGTACTTTAAGTGGCCAAGTTACTGATTCCTGGTCTTGGGTTGGAAAGCTGACCAGACTTAACAATTTGTTCCTAGCCGATACCAACTTAAGGGGAGATTTCCCATGTTTTTTGGCTAATCTGACGCAACTTGTGGAATTAGATTTGCACTACAATAAAATAACTGGTGAAATCCCATGTTTTTTGGCTAATCTGAAACAGCTTTCGATATTAACCTTGCGCCAAAATCAAATAACTGGTCAAATCCCATCTTGCCTTGGGCAGACCCATTTGACTGCATTAGACGCAGGATTGAACAATCTGCAAGGAACAATCCCCAGGTCACTATTCGAGCTTAGAAATCTTGAAGTTTTTTACCTCGACTCAAATAACTTGAGTGGGTATGTTGAATTCGATGAGTTTTCCAAGCTCGGAAAGTTGAGGGGACTTGATCTGTCGAACAACAAGTTTTCTGTGCATATCAAAACTAGATTTAGTGGTTTTCCTCCAAAGCTTCAAATACTAGGATTGGGTTCATGCAACTTAACAGAGTTTCCGGAATTTTTGAAGTTCAGTAGTGAACTGACATATCTAGATCTATATTTCAACAATCTTCATGGCCAAATACCAAAATGGATGTGGAATTCAGCTGGTGAAACTTTGTTGTATCTCGACCTTTTTCACAACCACTTAACTGGATTTGAAGAAAATCCTGTCATTATTCCATGGCCTCGGTTAATCTTTTTACAGCTTGGCTCTAACATGTTACGAGGATCATTGCCAATTCCAGGGCCATCAATGGCAGTCTATTTTGTTTCAAATAATGAATACGCAGGAGAAATTCCAGCAACATTCTGCAACGCGGGCGACCTATATGTTCTTGATTTGTCCAGCAACAACCTGAATGGCATGATTCCCCAATGTTTTGAGAATCTCAGAGCTCTTAAGATATTGAAACTGCAGAACAATTCTTTTCACGGGGATATTCCTCGAATAGGTTCAAACAGATGTTTGAACTTAGAAGCGATTGACTTGAGTTATAATCAGCTACAAGGGAAGCTACCAAGATCAATTGCCAATTGTTCTGGGTTGGTGTTTCTTAATTTGGGAAATAATCAGATCAGTGATACCTTCCCATCTTGGTTAGGAACACTTCAACAATTAAAAGTTCTCATTTTGCGGTCCAATGCATTTCATGGCATAATTGGGAAGCCTGCAAGTAGCCATGAGTTTCCTGAGCTGTCCATCATTGATTTATCTAGCAATGATTTTTCAAGTATGTTGCCCTCCGACTACTTGGAGAACTGGAATGCCATGAAATCTGTTGATGCAAACGAGCAAATATACATCCAATACGGGATCACTTACGGGAATTTCTATTATTCCTATAATTACGCGATTACAGTTTTTAGCAAAGGTGGTGAATTGAAGTATTTCAAGACCCCTTATCTTCTGAGAGTCGTAGACTTCTCAAGTAACAGATTTCACGGAGAGATCCCAGGTATCATTGGGAACCTAAGAGGGCTTCATTTGCTTAATCTTTCCAACAACACTCTCACTGGTCTCATCCCCTCTTCTTTGGGGAATTTGAGTGATCTTGAATCGTTGGATCTCTCCCAAAATCATCTCTCAGGAAAGATCCCCAGTGATTTAGCACAACTGACATTCCTTGCATACTTTAATGTAACCCACAATCGTCTTTCGGGGTCCATTCCACAAGGTGGACAATTTGATACATTCCAAGAGGATATGTACCAAGGAAACTCAGGTTTGTGTGGAAAACCTTTGCCAAAGAAATGTGAAGAATCTGAGAGCACAACACCACAAACATCAAGCTTTGAACAAGACGAAGACTCTGGATTTCAAATTGAACTAGATTGGTTTGTGGTTCTGCCAGGAGTTGTTGCTGGTCTAATAGTTGGAGTGGTTGGGGGAGACTTCTGGACAACCAAGAAGCATGACTGGTTTATAGAGACATTCAGCAGGAAGAGGCAGCCGAGAGGCATAAGGCACAAGAGGGGACTCAGAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

1003

Amino Acids

111.86

Weight (kDa)

5.88

Isoelectric Point (pI)

39.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 110 - 255 3.4e-07 Leucine-rich repeat region
LRR_14 PF23598 247 - 383 2.9e-09 Leucine-rich repeat region
LRR_14 PF23598 344 - 532 2.4e-08 Leucine-rich repeat region
LRR_8 PF13855 423 - 483 4e-06 Leucine rich repeat
LRR_8 PF13855 609 - 650 1.6e-06 Leucine rich repeat
LRR_14 PF23598 804 - 891 3.8e-06 Leucine-rich repeat region
LRR_8 PF13855 811 - 869 3.8e-07 Leucine rich repeat
LRR_8 PF13855 833 - 893 1.7e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000024)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45616 AT1G47890 AT2G25440 AT2G32660 AT2G32660 AT2G32680 AT2G33020 AT2G33030 AT2G33050 AT2G33060 AT2G33080 AT3G24900 AT3G24900 AT3G24982 AT3G25010 AT3G25010 AT3G25020 AT4G13810 AT4G13810 AT4G13810 AT4G13820 AT4G13880 AT4G13920 AT5G40170
fragaria_vesca FvH4_2g05950 FvH4_3g24110 FvH4_5g04000 FvH4_6g04890 FvH4_6g31760 FvH4_6g40760 FvH4_6g40800 FvH4_6g40820 FvH4_6g40840 FvH4_6g40842 FvH4_6g40843 FvH4_6g40847 FvH4_7g06093 FvH4_7g10111 FvH4_7g10112 FvH4_7g10113 FvH4_7g10114 FvH4_7g10130 FvH4_7g10150 FvH4_7g31280
malus_domestica MD00G1164200.v1.1 MD00G1164300.v1.1 MD01G1109000.v1.1 MD01G1109100.v1.1 MD07G1068900.v1.1 MD07G1069000.v1.1 MD07G1069300.v1.1 MD07G1069600.v1.1 MD07G1106700.v1.1 MD07G1106900.v1.1 MD07G1107200.v1.1 MD07G1107300.v1.1 MD07G1107400.v1.1 MD07G1107800.v1.1 MD09G1124300.v1.1 MD09G1124700.v1.1 MD09G1124800.v1.1 MD09G1124900.v1.1 MD09G1125100.v1.1 MD09G1125300.v1.1 MD09G1125400.v1.1 MD09G1125500.v1.1 MD09G1125600.v1.1 MD09G1130600.v1.1 MD09G1130900.v1.1 MD09G1131100.v1.1 MD17G1115000.v1.1 MD17G1115100.v1.1 MD17G1115300.v1.1 MD17G1115500.v1.1
prunus_persica Prupe.2G128400_v2.0.a1 Prupe.2G128600_v2.0.a1 Prupe.2G128700_v2.0.a1 Prupe.2G130100_v2.0.a1 Prupe.2G130300_v2.0.a1 Prupe.2G130400_v2.0.a1 Prupe.2G130500_v2.0.a1 Prupe.2G130600_v2.0.a1 Prupe.2G130700_v2.0.a1 Prupe.2G130900_v2.0.a1 Prupe.2G131000_v2.0.a1 Prupe.3G094800_v2.0.a1 Prupe.3G094900_v2.0.a1 Prupe.3G195900_v2.0.a1 Prupe.3G196000_v2.0.a1 Prupe.3G196000_v2.0.a1 Prupe.3G199200_v2.0.a1 Prupe.3G199200_v2.0.a1 Prupe.3G199400_v2.0.a1 Prupe.3G199500_v2.0.a1 Prupe.3G199900_v2.0.a1 Prupe.3G200000_v2.0.a1 Prupe.4G168900_v2.0.a1 Prupe.4G232400_v2.0.a1 Prupe.4G233100_v2.0.a1 Prupe.4G233100_v2.0.a1 Prupe.4G233200_v2.0.a1 Prupe.4G233600_v2.0.a1 Prupe.4G234000_v2.0.a1 Prupe.4G234200_v2.0.a1 Prupe.4G279000_v2.0.a1 Prupe.4G279000_v2.0.a1
pyrus_communis pycom01g13640 pycom05g05290 pycom05g05300 pycom05g05310 pycom05g05320 pycom07g05310 pycom07g05920 pycom07g09130 pycom07g09160 pycom07g09190 pycom07g09210 pycom09g04810 pycom09g04820 pycom09g04850 pycom09g04860 pycom09g04870 pycom09g04930 pycom09g04940 pycom09g04960 pycom09g04980 pycom11g17040 pycom11g17080 pycom11g17100 pycom17g10620 pycom17g10640 pycom17g10650 pycom17g10660
rosa_chinensis RchiOBHm_Chr1g0340311 RchiOBHm_Chr1g0340341 RchiOBHm_Chr1g0340351 RchiOBHm_Chr1g0340361 RchiOBHm_Chr1g0340411 RchiOBHm_Chr1g0340481 RchiOBHm_Chr1g0340521 RchiOBHm_Chr1g0340591 RchiOBHm_Chr1g0340631 RchiOBHm_Chr1g0340681 RchiOBHm_Chr1g0344431 RchiOBHm_Chr1g0346361 RchiOBHm_Chr1g0347011 RchiOBHm_Chr1g0347021 RchiOBHm_Chr1g0347031 RchiOBHm_Chr1g0347041 RchiOBHm_Chr1g0347561 RchiOBHm_Chr1g0347571 RchiOBHm_Chr1g0347811 RchiOBHm_Chr1g0347841 RchiOBHm_Chr1g0347861 RchiOBHm_Chr1g0348951 RchiOBHm_Chr1g0357511 RchiOBHm_Chr1g0367531 RchiOBHm_Chr1g0368411 RchiOBHm_Chr2g0154781 RchiOBHm_Chr2g0154841 RchiOBHm_Chr2g0155021 RchiOBHm_Chr2g0155091 RchiOBHm_Chr2g0155101 RchiOBHm_Chr2g0156211 RchiOBHm_Chr2g0156251 RchiOBHm_Chr2g0156281 RchiOBHm_Chr2g0156371 RchiOBHm_Chr2g0156381 RchiOBHm_Chr2g0156411 RchiOBHm_Chr2g0173751 RchiOBHm_Chr3g0494931 RchiOBHm_Chr4g0385161 RchiOBHm_Chr4g0385171 RchiOBHm_Chr4g0408231 RchiOBHm_Chr4g0408241 RchiOBHm_Chr5g0005251 RchiOBHm_Chr5g0030911 RchiOBHm_Chr5g0042831 RchiOBHm_Chr5g0042871 RchiOBHm_Chr5g0042881 RchiOBHm_Chr5g0043081 RchiOBHm_Chr5g0043131 RchiOBHm_Chr5g0043361 RchiOBHm_Chr5g0043371 RchiOBHm_Chr5g0043381 RchiOBHm_Chr5g0083391 RchiOBHm_Chr5g0083401 RchiOBHm_Chr5g0083441 RchiOBHm_Chr5g0083451 RchiOBHm_Chr5g0083461 RchiOBHm_Chr5g0083471 RchiOBHm_Chr5g0083501 RchiOBHm_Chr5g0083531 RchiOBHm_Chr5g0083601 RchiOBHm_Chr5g0083611 RchiOBHm_Chr5g0083651 RchiOBHm_Chr6g0257441 RchiOBHm_Chr6g0257601 RchiOBHm_Chr6g0257621 RchiOBHm_Chr6g0257631 RchiOBHm_Chr6g0263371 RchiOBHm_Chr6g0263391 RchiOBHm_Chr6g0263401 RchiOBHm_Chr6g0263411
rosa_laevigata RLG00000003361 RLG00000008615 RLG00000010252 RLG00000014349 RLG00000014351 RLG00000014359 RLG00000014696 RLG00000014706 RLG00000014711 RLG00000014712 RLG00000018865 RLG00000020803 RLG00000020804 RLG00000020808 RLG00000020811 RLG00000020812 RLG00000020816 RLG00000020817 RLG00000020818 RLG00000020896 RLG00000020902 RLG00000020904 RLG00000020905 RLG00000020906 RLG00000020907 RLG00000020908 RLG00000020909 RLG00000020910 RLG00000022216 RLG00000022218 RLG00000027211 RLG00000027212 RLG00000027213 RLG00000027214 RLG00000028474 RLG00000028475 RLG00000028613 RLG00000028708 RLG00000028709 RLG00000028737 RLG00000028738 RLG00000028764 RLG00000029010 RLG00000029012 RLG00000029019 RLG00000029022 RLG00000029025 RLG00000029027 RLG00000029031 RLG00000029035 RLG00000029141 RLG00000030130 RLG00000033005 RLG00000033271 RLG00000034150 RLG00000034153 RLG00000034158 RLG00000034160 RLG00000034164 RLG00000034166 RLG00000034167 RLG00000034183 RLG00000037034 RLG00000037035
rosa_multiflora Rmu_co8046282.1_g000001 Rmu_co8137732.1_g000001 Rmu_co8267491.1_g000001 Rmu_co8329695.1_g000001 Rmu_co8330005.1_g000001 Rmu_co8351095.1_g000001 Rmu_co8357797.1_g000001 Rmu_co8424479.1_g000001 Rmu_co8425575.1_g000001 Rmu_co8485497.1_g000001 Rmu_sc0000060.1_g000020 Rmu_sc0000260.1_g000009 Rmu_sc0000565.1_g000006 Rmu_sc0000566.1_g000023 Rmu_sc0000566.1_g000025 Rmu_sc0000566.1_g000031 Rmu_sc0000566.1_g000033 Rmu_sc0000566.1_g000036 Rmu_sc0000566.1_g000045 Rmu_sc0000566.1_g000048 Rmu_sc0000698.1_g000009 Rmu_sc0000698.1_g000031 Rmu_sc0000820.1_g000049 Rmu_sc0001099.1_g000008 Rmu_sc0001167.1_g000009 Rmu_sc0001167.1_g000070 Rmu_sc0001205.1_g000014 Rmu_sc0001444.1_g000008 Rmu_sc0001836.1_g000017 Rmu_sc0001836.1_g000021 Rmu_sc0001836.1_g000065 Rmu_sc0001974.1_g000014 Rmu_sc0002048.1_g000006 Rmu_sc0002048.1_g000018 Rmu_sc0002048.1_g000034 Rmu_sc0002079.1_g000008 Rmu_sc0002079.1_g000012 Rmu_sc0002079.1_g000034 Rmu_sc0002161.1_g000018 Rmu_sc0002245.1_g000018 Rmu_sc0002245.1_g000040 Rmu_sc0002538.1_g000004 Rmu_sc0002595.1_g000003 Rmu_sc0002595.1_g000004 Rmu_sc0002709.1_g000027 Rmu_sc0002709.1_g000043 Rmu_sc0003086.1_g000004 Rmu_sc0003188.1_g000002 Rmu_sc0003188.1_g000003 Rmu_sc0003301.1_g000003 Rmu_sc0003522.1_g000040 Rmu_sc0003785.1_g000004 Rmu_sc0003918.1_g000002 Rmu_sc0003918.1_g000015 Rmu_sc0004325.1_g000017 Rmu_sc0004355.1_g000007 Rmu_sc0004976.1_g000006 Rmu_sc0004976.1_g000010 Rmu_sc0004976.1_g000024 Rmu_sc0005144.1_g000016 Rmu_sc0005167.1_g000002 Rmu_sc0005451.1_g000002 Rmu_sc0006217.1_g000004 Rmu_sc0006908.1_g000027 Rmu_sc0008148.1_g000016 Rmu_sc0008148.1_g000044 Rmu_sc0008148.1_g000047 Rmu_sc0008734.1_g000012 Rmu_sc0008734.1_g000017 Rmu_sc0010137.1_g000014 Rmu_sc0010308.1_g000003 Rmu_sc0010719.1_g000001 Rmu_sc0014922.1_g000001 Rmu_sc0020148.1_g000001 Rmu_sc0024761.1_g000002 Rmu_sc0024761.1_g000003 Rmu_sc0027638.1_g000002 Rmu_sc0030439.1_g000001 Rmu_sc0033559.1_g000001 Rmu_sc0036789.1_g000001 Rmu_ssc0000173.1_g000015 Rmu_ssc0000245.1_g000025 Rmu_ssc0000342.1_g000001
rosa_roxburghii Rroxscaffold_1G00000980 Rroxscaffold_1G00000990 Rroxscaffold_1G00001050 Rroxscaffold_1G00001070 Rroxscaffold_1G00037490 Rroxscaffold_1G00037600 Rroxscaffold_1G00037640 Rroxscaffold_1G00037680 Rroxscaffold_1G00037700 Rroxscaffold_1G00037720 Rroxscaffold_1G00037780 Rroxscaffold_1G00037810 Rroxscaffold_2G00078660 Rroxscaffold_2G00093050 Rroxscaffold_2G00093070 Rroxscaffold_2G00093120 Rroxscaffold_2G00093140 Rroxscaffold_2G00093950 Rroxscaffold_2G00093980 Rroxscaffold_2G00093990 Rroxscaffold_2G00094050 Rroxscaffold_2G00094080 Rroxscaffold_2G00125300 Rroxscaffold_3G00218210 Rroxscaffold_4G00288530 Rroxscaffold_4G00288580 Rroxscaffold_4G00306260 Rroxscaffold_4G00306350 Rroxscaffold_4G00306420 Rroxscaffold_4G00307420 Rroxscaffold_4G00307660 Rroxscaffold_4G00307690 Rroxscaffold_4G00307720 Rroxscaffold_4G00311180 Rroxscaffold_4G00311220 Rroxscaffold_4G00311240 Rroxscaffold_4G00315940 Rroxscaffold_4G00315950 Rroxscaffold_5G00333080 Rroxscaffold_7G00208670 Rroxscaffold_7G00208690 Rroxscaffold_7G00208700 Rroxscaffold_7G00208710 Rroxscaffold_7G00208830 Rroxscaffold_7G00208840 Rroxscaffold_7G00208860
rosa_rugosa Rorug01G0052800 Rorug01G0052900 Rorug01G0084800 Rorug01G0162300.1 Rorug01G0162600.1 Rorug01G0162700.1 Rorug01G0163100.1 Rorug01G0163300.1 Rorug01G0163800.1 Rorug01G0163900.1 Rorug01G0164200.1 Rorug01G0164400.1 Rorug01G0187700 Rorug01G0187800 Rorug01G0189400 Rorug01G0189500 Rorug01G0189600 Rorug01G0189800 Rorug01G0190200 Rorug01G0190300 Rorug01G0198800 Rorug01G0341700 Rorug02G0445100 Rorug02G0445300 Rorug02G0445400 Rorug02G0452600 Rorug02G0452700 Rorug02G0452800 Rorug02G0453000 Rorug02G0522500 Rorug02G0572500 Rorug05G0203900 Rorug05G0204100 Rorug05G0204200 Rorug05G0204400 Rorug05G0205500 Rorug05G0205600 Rorug05G0484800 Rorug05G0484800 Rorug05G0484900 Rorug05G0570000 Rorug05G0570100 Rorug05G0570200 Rorug05G0570300.1 Rorug05G0570800 Rorug05G0570900 Rorug05G0572200 Rorug05G0572500
rosa_samantha Rh1AG178100 Rh1AG178500 Rh1AG178800 Rh1AG206800 Rh1AG207200 Rh1AG207700 Rh1AG348900 Rh2AG316000 Rh2BG522100 Rh2BG522400 Rh2BG530500 Rh2BG531000 Rh3AG317700 Rh4CG003500 Rh5AG289600 Rh5BG293800 Rh5BG294000 Rh5BG295500 Rh5BG296000 Rh5BG296300 Rh5BG297800 Rh5DG303900 Rh5DG305200 Rh5DG305500 Rh6AG126500
rosa_wichuraiana Rw0G002430 Rw0G013640 Rw1G014810 Rw1G014830 Rw1G014860 Rw1G014870 Rw1G014910 Rw1G017200 Rw1G017210 Rw1G017300 Rw1G017610 Rw1G017670 Rw1G017710 Rw1G017730 Rw1G018330 Rw1G018440 Rw1G031010 Rw1G031040 Rw1G031060 Rw2G042020 Rw2G042760 Rw2G042790 Rw2G042800 Rw2G053460 Rw2G053470 Rw4G000600 Rw5G019620 Rw5G027010 Rw5G049870 Rw5G050460 Rw5G050530 Rw6G007730 Rw6G007740 Rw6G007770 Rw6G007860 Rw6G010660 Rw6G010800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2019
Acc36I ACCTGC 1 cut(s) 871
AccB7I CCANNNNNTGG 1 cut(s) 2699
AccI GTMKAC 1 cut(s) 2442
AccII CGCG 2 cut(s) 1841, 2375
AccIII TCCGGA 1 cut(s) 1534
AciI CCGC 2 cut(s) 1841, 2158
AclWI GGATC 8 cut(s) 13, 170, 218, 1759, 2345, 2467, 2595, 2611
AcoI YGGCCR 4 cut(s) 280, 478, 1012, 1597
AcuI CTGAAG 2 cut(s) 379, 813
AdeI CACNNNGTG 1 cut(s) 2699
AfaI GTAC 5 cut(s) 87, 411, 750, 1003, 2732
AfeI AGCGCT 1 cut(s) 119
AfiI CCNNNNNNNGG 5 cut(s) 1035, 1089, 1766, 1973, 2699
AflII CTTAAG 2 cut(s) 1087, 1922
AflIII ACRYGT 1 cut(s) 1740
AgeI ACCGGT 1 cut(s) 779
AhlI ACTAGT 1 cut(s) 437
AjiI CACGTC 1 cut(s) 675
AjnI CCWGG 5 cut(s) 1028, 1316, 1765, 2476, 2872
AloI GAACNNNNNNTCC 2 cut(s) 564, 596
Alw21I GWGCWC 2 cut(s) 1921, 2795
Alw26I GTCTC 5 cut(s) 681, 870, 2546, 2907, 2945
AlwI GGATC 8 cut(s) 13, 170, 218, 1759, 2345, 2467, 2595, 2611
Aor13HI TCCGGA 1 cut(s) 1534
Aor51HI AGCGCT 1 cut(s) 119
AoxI GGCC 9 cut(s) 280, 292, 424, 478, 759, 1012, 1597, 1706, 1769
ApeKI GCWGC 5 cut(s) 65, 267, 309, 604, 2971
ArsI GACNNNNNNTTYG 2 cut(s) 1222, 1254
AseI ATTAAT 1 cut(s) 60
AsiGI ACCGGT 1 cut(s) 779
Asp700I GAANNNNTTC 2 cut(s) 1975, 2411
AspLEI GCGC 2 cut(s) 120, 1221
AspS9I GGNCC 3 cut(s) 1769, 2160, 2685
AsuHPI GGTGA 4 cut(s) 667, 1178, 1643, 2411
AvaII GGWCC 2 cut(s) 2160, 2685
BalI TGGCCA 4 cut(s) 282, 480, 1014, 1599
BanII GRGCYC 1 cut(s) 1921
BbsI GAAGAC 5 cut(s) 459, 525, 657, 677, 2835
Bbv12I GWGCWC 2 cut(s) 1921, 2795
BbvI GCAGC 5 cut(s) 52, 279, 321, 616, 2983
BciT130I CCWGG 5 cut(s) 1030, 1318, 1767, 2478, 2874
BcoDI GTCTC 5 cut(s) 681, 870, 2546, 2907, 2945
BcuI ACTAGT 1 cut(s) 437
BfmI CTRYAG 1 cut(s) 1937
BfoI RGCGCY 1 cut(s) 121
BfrI CTTAAG 2 cut(s) 1087, 1922
BfuAI ACCTGC 1 cut(s) 871
BglII AGATCT 1 cut(s) 1573
BisI GCNGC 5 cut(s) 66, 268, 310, 605, 2972
BlsI GCNGC 5 cut(s) 67, 269, 311, 606, 2973
BmcAI AGTACT 1 cut(s) 750
Bme1390I CCNGG 5 cut(s) 1030, 1318, 1767, 2478, 2874
Bme18I GGWCC 2 cut(s) 2160, 2685
BmgBI CACGTC 1 cut(s) 675
BmgT120I GGNCC 3 cut(s) 1769, 2160, 2685
BmiI GGNNCC 4 cut(s) 325, 634, 2492, 2686
BmrFI CCNGG 5 cut(s) 1030, 1318, 1767, 2478, 2874
BmrI ACTGGG 2 cut(s) 710, 2616
BmsI GCATC 1 cut(s) 2296
BmuI ACTGGG 2 cut(s) 710, 2616
BpiI GAAGAC 5 cut(s) 459, 525, 657, 677, 2835
BplI GAGNNNNNCTC 2 cut(s) 617, 649
Bpu10I CCTNAGC 1 cut(s) 2214
BpuEI CTTGAG 4 cut(s) 390, 1393, 2032, 2434
BsaI GGTCTC 2 cut(s) 870, 2546
BsaJI CCNNGG 9 cut(s) 230, 970, 1255, 1316, 1703, 1709, 1766, 2476, 2734
BsaWI WCCGGW 2 cut(s) 779, 1534
BsaXI ACNNNNNCTCC 2 cut(s) 226, 256
Bsc4I CCNNNNNNNGG 5 cut(s) 1035, 1089, 1766, 1973, 2699
Bse118I RCCGGY 1 cut(s) 779
Bse1I ACTGG 8 cut(s) 716, 1168, 1240, 1678, 2288, 2542, 2622, 2945
Bse3DI GCAATG 2 cut(s) 1754, 2248
BseAI TCCGGA 1 cut(s) 1534
BseBI CCWGG 5 cut(s) 1030, 1318, 1767, 2478, 2874
BseDI CCNNGG 9 cut(s) 230, 970, 1255, 1316, 1703, 1709, 1766, 2476, 2734
BseGI GGATG 4 cut(s) 259, 1620, 2325, 2544
BseLI CCNNNNNNNGG 5 cut(s) 1035, 1089, 1766, 1973, 2699
BseMI GCAATG 2 cut(s) 1754, 2248
BseMII CTCAG 6 cut(s) 1927, 2205, 2423, 2622, 2757, 2778
BseNI ACTGG 8 cut(s) 716, 1168, 1240, 1678, 2288, 2542, 2622, 2945
BseXI GCAGC 5 cut(s) 52, 279, 321, 616, 2983
BseYI CCCAGC 1 cut(s) 957
Bsh1236I CGCG 2 cut(s) 1841, 2375
BshFI GGCC 9 cut(s) 282, 294, 426, 480, 761, 1014, 1599, 1708, 1771
BshTI ACCGGT 1 cut(s) 779
BsiHKAI GWGCWC 2 cut(s) 1921, 2795
BsiSI CCGG 2 cut(s) 780, 1535
BslFI GGGAC 3 cut(s) 532, 798, 1437
BslI CCNNNNNNNGG 5 cut(s) 1035, 1089, 1766, 1973, 2699
BsmAI GTCTC 5 cut(s) 681, 870, 2546, 2907, 2945
BsmBI CGTCTC 1 cut(s) 681
BsmFI GGGAC 3 cut(s) 532, 798, 1437
BsmI GAATGC 3 cut(s) 269, 908, 2293
BsnI GGCC 9 cut(s) 282, 294, 426, 480, 761, 1014, 1599, 1708, 1771
Bso31I GGTCTC 2 cut(s) 870, 2546
Bsp1286I GDGCHC 2 cut(s) 1921, 2795
Bsp13I TCCGGA 1 cut(s) 1534
Bsp1407I TGTACA 1 cut(s) 85
Bsp19I CCATGG 1 cut(s) 1703
BspACI CCGC 2 cut(s) 1841, 2158
BspANI GGCC 9 cut(s) 282, 294, 426, 480, 761, 1014, 1599, 1708, 1771
BspCNI CTCAG 6 cut(s) 1926, 2206, 2424, 2621, 2756, 2779
BspEI TCCGGA 1 cut(s) 1534
BspFNI CGCG 2 cut(s) 1841, 2375
BspLI GGNNCC 4 cut(s) 325, 634, 2492, 2686
BspMAI CTGCAG 1 cut(s) 1941
BspMI ACCTGC 1 cut(s) 871
BspPI GGATC 8 cut(s) 13, 170, 218, 1759, 2345, 2467, 2595, 2611
BspQI GCTCTTC 1 cut(s) 789
BspTI CTTAAG 2 cut(s) 1087, 1922
BspTNI GGTCTC 2 cut(s) 870, 2546
BsrDI GCAATG 2 cut(s) 1754, 2248
BsrFI RCCGGY 1 cut(s) 779
BsrGI TGTACA 1 cut(s) 85
BsrI ACTGG 8 cut(s) 716, 1168, 1240, 1678, 2288, 2542, 2622, 2945
BssAI RCCGGY 1 cut(s) 779
BssECI CCNNGG 9 cut(s) 230, 970, 1255, 1316, 1703, 1709, 1766, 2476, 2734
BssT1I CCWWGG 5 cut(s) 230, 970, 1255, 1703, 2734
Bst2UI CCWGG 5 cut(s) 1030, 1318, 1767, 2478, 2874
Bst4CI ACNGT 4 cut(s) 242, 640, 1001, 2383
Bst6I CTCTTC 3 cut(s) 789, 2557, 2960
BstAFI CTTAAG 2 cut(s) 1087, 1922
BstAUI TGTACA 1 cut(s) 85
BstC8I GCNNGC 4 cut(s) 70, 307, 1843, 2193
BstDSI CCRYGG 1 cut(s) 1703
BstENI CCTNNNNNAGG 1 cut(s) 1971
BstF5I GGATG 4 cut(s) 259, 1620, 2325, 2544
BstFNI CGCG 2 cut(s) 1841, 2375
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 2 cut(s) 120, 1221
BstMAI GTCTC 5 cut(s) 681, 870, 2546, 2907, 2945
BstMWI GCNNNNNNNGC 3 cut(s) 1283, 1842, 2509
BstNI CCWGG 5 cut(s) 1030, 1318, 1767, 2478, 2874
BstNSI RCATGY 3 cut(s) 72, 696, 1744
BstSCI CCNGG 5 cut(s) 1028, 1316, 1765, 2476, 2872
BstSFI CTRYAG 1 cut(s) 1937
BstUI CGCG 2 cut(s) 1841, 2375
BstV1I GCAGC 5 cut(s) 52, 279, 321, 616, 2983
BstV2I GAAGAC 5 cut(s) 459, 525, 657, 677, 2835
BstX2I RGATCY 6 cut(s) 175, 223, 1573, 2472, 2587, 2616
BstXI CCANNNNNNTGG 3 cut(s) 278, 290, 1673
BstYI RGATCY 6 cut(s) 175, 223, 1573, 2472, 2587, 2616
BsuRI GGCC 9 cut(s) 282, 294, 426, 480, 761, 1014, 1599, 1708, 1771
BtgI CCRYGG 1 cut(s) 1703
BtrI CACGTC 1 cut(s) 675
BtsCI GGATG 4 cut(s) 259, 1620, 2325, 2544
BtsIMutI CAGTG 4 cut(s) 645, 2107, 2535, 2629
BveI ACCTGC 1 cut(s) 871
Cac8I GCNNGC 4 cut(s) 70, 307, 1843, 2193
CfoI GCGC 2 cut(s) 120, 1221
Cfr10I RCCGGY 1 cut(s) 779
Cfr13I GGNCC 3 cut(s) 1769, 2160, 2685
CseI GACGC 2 cut(s) 1132, 1292
Csp6I GTAC 5 cut(s) 86, 410, 749, 1002, 2731
CspAI ACCGGT 1 cut(s) 779
CviQI GTAC 5 cut(s) 86, 410, 749, 1002, 2731
DraIII CACNNNGTG 1 cut(s) 2699
EaeI YGGCCR 4 cut(s) 280, 478, 1012, 1597
Eam1104I CTCTTC 3 cut(s) 789, 2557, 2960
EarI CTCTTC 3 cut(s) 789, 2557, 2960
Ecl136II GAGCTC 1 cut(s) 1919
Eco130I CCWWGG 5 cut(s) 230, 970, 1255, 1703, 2734
Eco24I GRGCYC 1 cut(s) 1921
Eco31I GGTCTC 2 cut(s) 870, 2546
Eco47I GGWCC 2 cut(s) 2160, 2685
Eco47III AGCGCT 1 cut(s) 119
Eco53kI GAGCTC 1 cut(s) 1919
Eco57I CTGAAG 2 cut(s) 379, 813
EcoICRI GAGCTC 1 cut(s) 1919
EcoNI CCTNNNNNAGG 1 cut(s) 1971
EcoRI GAATTC 3 cut(s) 20, 1388, 1621
EcoRII CCWGG 5 cut(s) 1028, 1316, 1765, 2476, 2872
EcoT14I CCWWGG 5 cut(s) 230, 970, 1255, 1703, 2734
EcoT22I ATGCAT 1 cut(s) 2170
EcoT38I GRGCYC 1 cut(s) 1921
ErhI CCWWGG 5 cut(s) 230, 970, 1255, 1703, 2734
Esp3I CGTCTC 1 cut(s) 681
FaqI GGGAC 3 cut(s) 532, 798, 1437
FauI CCCGC 1 cut(s) 1834
FblI GTMKAC 1 cut(s) 2442
Fnu4HI GCNGC 5 cut(s) 66, 268, 310, 605, 2972
FokI GGATG 4 cut(s) 266, 1627, 2312, 2531
FriOI GRGCYC 1 cut(s) 1921
Fsp4HI GCNGC 5 cut(s) 66, 268, 310, 605, 2972
GlaI GCGC 2 cut(s) 119, 1220
GluI GCNGC 5 cut(s) 66, 268, 310, 605, 2972
GsaI CCCAGC 1 cut(s) 961
HaeII RGCGCY 1 cut(s) 121
HaeIII GGCC 9 cut(s) 282, 294, 426, 480, 761, 1014, 1599, 1708, 1771
HapII CCGG 2 cut(s) 780, 1535
HgaI GACGC 2 cut(s) 1132, 1292
HhaI GCGC 2 cut(s) 120, 1221
Hin6I GCGC 2 cut(s) 118, 1219
HinP1I GCGC 2 cut(s) 118, 1219
HincII GTYRAC 1 cut(s) 840
HindII GTYRAC 1 cut(s) 840
HindIII AAGCTT 2 cut(s) 1490, 2812
HpaII CCGG 2 cut(s) 780, 1535
HphI GGTGA 4 cut(s) 667, 1178, 1643, 2411
Hpy166II GTNNAC 4 cut(s) 840, 1559, 2443, 2702
Hpy8I GTNNAC 4 cut(s) 840, 1559, 2443, 2702
Hpy99I CGWCG 1 cut(s) 1001
HpyAV CCTTC 3 cut(s) 212, 890, 2119
HpyCH4III ACNGT 4 cut(s) 242, 640, 1001, 2383
HpyCH4IV ACGT 1 cut(s) 674
HpyF10VI GCNNNNNNNGC 3 cut(s) 1283, 1842, 2509
HpySE526I ACGT 1 cut(s) 674
HspAI GCGC 2 cut(s) 118, 1219
Kpn2I TCCGGA 1 cut(s) 1534
LguI GCTCTTC 1 cut(s) 789
LmnI GCTCC 1 cut(s) 638
Lsp1109I GCAGC 5 cut(s) 52, 279, 321, 616, 2983
LweI GCATC 1 cut(s) 2296
MaeII ACGT 1 cut(s) 674
MaeIII GTNAC 8 cut(s) 236, 695, 782, 1018, 1320, 1743, 2453, 2662
MfeI CAATTG 2 cut(s) 2049, 2056
MflI RGATCY 6 cut(s) 175, 223, 1573, 2472, 2587, 2616
MhlI GDGCHC 2 cut(s) 1921, 2795
MlsI TGGCCA 4 cut(s) 282, 480, 1014, 1599
MluNI TGGCCA 4 cut(s) 282, 480, 1014, 1599
MlyI GAGTC 5 cut(s) 269, 1355, 2445, 2825, 2994
MmeI TCCRAC 8 cut(s) 408, 972, 1017, 1021, 2292, 2547, 2565, 2878
Mox20I TGGCCA 4 cut(s) 282, 480, 1014, 1599
Mph1103I ATGCAT 1 cut(s) 2170
MroI TCCGGA 1 cut(s) 1534
MroXI GAANNNNTTC 2 cut(s) 1975, 2411
MscI TGGCCA 4 cut(s) 282, 480, 1014, 1599
MslI CAYNNNNRTG 2 cut(s) 13, 111
Msp20I TGGCCA 4 cut(s) 282, 480, 1014, 1599
MspA1I CMGCKG 1 cut(s) 1628
MspCI CTTAAG 2 cut(s) 1087, 1922
MspI CCGG 2 cut(s) 780, 1535
MspR9I CCNGG 5 cut(s) 1030, 1318, 1767, 2478, 2874
MunI CAATTG 2 cut(s) 2049, 2056
Mva1269I GAATGC 3 cut(s) 269, 908, 2293
MvaI CCWGG 5 cut(s) 1030, 1318, 1767, 2478, 2874
MvnI CGCG 2 cut(s) 1841, 2375
MwoI GCNNNNNNNGC 3 cut(s) 1283, 1842, 2509
NcoI CCATGG 1 cut(s) 1703
NlaIV GGNNCC 4 cut(s) 325, 634, 2492, 2686
NmeAIII GCCGAG 1 cut(s) 3000
NmuCI GTSAC 1 cut(s) 1320
NsiI ATGCAT 1 cut(s) 2170
NspI RCATGY 3 cut(s) 72, 696, 1744
PaeI GCATGC 1 cut(s) 72
PciI ACATGT 1 cut(s) 1740
PciSI GCTCTTC 1 cut(s) 789
PctI GAATGC 3 cut(s) 269, 908, 2293
PdmI GAANNNNTTC 2 cut(s) 1975, 2411
PfeI GAWTC 5 cut(s) 1025, 1891, 1909, 2579, 2783
PflMI CCANNNNNTGG 1 cut(s) 2699
PinAI ACCGGT 1 cut(s) 779
PkrI GCNGC 5 cut(s) 67, 269, 311, 606, 2973
PleI GAGTC 5 cut(s) 269, 1355, 2444, 2825, 2994
PpsI GAGTC 5 cut(s) 269, 1355, 2444, 2825, 2994
PscI ACATGT 1 cut(s) 1740
PshBI ATTAAT 1 cut(s) 60
PsiI TTATAA 1 cut(s) 2019
Psp124BI GAGCTC 1 cut(s) 1921
Psp6I CCWGG 5 cut(s) 1028, 1316, 1765, 2476, 2872
PspFI CCCAGC 1 cut(s) 957
PspGI CCWGG 5 cut(s) 1028, 1316, 1765, 2476, 2872
PspN4I GGNNCC 4 cut(s) 325, 634, 2492, 2686
PspPI GGNCC 3 cut(s) 1769, 2160, 2685
PsrI GAACNNNNNNTAC 2 cut(s) 229, 261
PstI CTGCAG 1 cut(s) 1941
PsuI RGATCY 6 cut(s) 175, 223, 1573, 2472, 2587, 2616
PvuII CAGCTG 1 cut(s) 1628
RsaI GTAC 5 cut(s) 87, 411, 750, 1003, 2732
RsaNI GTAC 5 cut(s) 86, 410, 749, 1002, 2731
RseI CAYNNNNRTG 2 cut(s) 13, 111
SacI GAGCTC 1 cut(s) 1921
SapI GCTCTTC 1 cut(s) 789
SatI GCNGC 5 cut(s) 66, 268, 310, 605, 2972
Sau96I GGNCC 3 cut(s) 1769, 2160, 2685
ScaI AGTACT 1 cut(s) 750
SchI GAGTC 5 cut(s) 269, 1355, 2445, 2825, 2994
ScrFI CCNGG 5 cut(s) 1030, 1318, 1767, 2478, 2874
SduI GDGCHC 2 cut(s) 1921, 2795
SfaNI GCATC 1 cut(s) 2296
SfcI CTRYAG 1 cut(s) 1937
SinI GGWCC 2 cut(s) 2160, 2685
SmiMI CAYNNNNRTG 2 cut(s) 13, 111
SmlI CTYRAG 6 cut(s) 405, 1087, 1372, 1922, 2011, 2449
SmoI CTYRAG 6 cut(s) 405, 1087, 1372, 1922, 2011, 2449
SpeI ACTAGT 1 cut(s) 437
SphI GCATGC 1 cut(s) 72
SsiI CCGC 2 cut(s) 1841, 2158
SstI GAGCTC 1 cut(s) 1921
StyD4I CCNGG 5 cut(s) 1028, 1316, 1765, 2476, 2872
StyI CCWWGG 5 cut(s) 230, 970, 1255, 1703, 2734
TaaI ACNGT 4 cut(s) 242, 640, 1001, 2383
TaiI ACGT 1 cut(s) 677
TaqI TCGA 7 cut(s) 1205, 1329, 1359, 1392, 1436, 1650, 1969
TatI WGTACW 2 cut(s) 85, 748
TfiI GAWTC 5 cut(s) 1025, 1891, 1909, 2579, 2783
TscAI CASTG 4 cut(s) 645, 2107, 2542, 2629
TseFI GTSAC 1 cut(s) 1320
TseI GCWGC 5 cut(s) 65, 267, 309, 604, 2971
Tsp45I GTSAC 1 cut(s) 1320
TspGWI ACGGA 2 cut(s) 671, 2481
TspRI CASTG 4 cut(s) 645, 2107, 2542, 2629
Van91I CCANNNNNTGG 1 cut(s) 2699
Vha464I CTTAAG 2 cut(s) 1087, 1922
VpaK11BI GGWCC 2 cut(s) 2160, 2685
VspI ATTAAT 1 cut(s) 60
XagI CCTNNNNNAGG 1 cut(s) 1971
XbaI TCTAGA 1 cut(s) 1570
XceI RCATGY 3 cut(s) 72, 696, 1744
XcmI CCANNNNNNNNNTGG 1 cut(s) 1614
XmiI GTMKAC 1 cut(s) 2442
XmnI GAANNNNTTC 2 cut(s) 1975, 2411
ZrmI AGTACT 1 cut(s) 750
Zsp2I ATGCAT 1 cut(s) 2170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.