MD09G1131100.v1.1

receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000024
Physical Location & Seq
Reverse (-)
10090820 .. 10093798
2979 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1131100.v1.1.491

Sequence Viewer

Length: 2958 bp
ATGGATTCTTTGTTGTCCAAGTTTACCTGTTTGCATTGTCTTCTTTTGCTATTACTCAATGCTACTCACTGTTTTTCATTTGTGCAGACTCAGACACGGACACTTTGCCACACTGACGAGCATTCCTTCTTGTTACAATTCAAGGAAAGCTTTACGATAGACAAGTCAGCTTCTGGATCTCCTTTTGCTTATCCAAAGGTTGCATCTTGGGCTCGAGAAGGAGATCAAAATCAGAGTAACTGTTGTTCGTGGGATGGTGTTGAGTGCCATGCGGAGTCTGGCCGTGTCATTGGCCTTGACCTCAAGAGTAGCTGTCTCTATGGTTCTATCAATTCCAACATCACCCTCTTCCGACTTGTTCACTTGCAGAAGCTTGACCTCTCAGATAACAACTTCAATTCCTCTAAAATACCATCGAGATTGGGCCATGACCTTTCGAGTCTATCCTATCTCAACCTTTCAAGGTCTGCATTTTCTGGCCAAATTCCATCTGAAATTTCAAAGCTATCCAAACTGTCTACCCTTGTTCTGTCTTACAATAATGGTTTGGAGCTTAGGAAGTCCATCATGAGAATCCTAGTCCAAAACTTGACCAGCATAAAACAACTTCATCTTAGTGATGTAGGCATATACTCCACTGTGCCTGATATCTTGGTCAACGCATCTTCTCTCACATCTCTCAATCTAAGCTCTTGTGGGTTGTATGGGGAATTCCCAGTAGGCATTTTCCACCTACCAAATTTAGAGGAGCTTAGATTGTACTCGAACACAGACCTAAATGGTTATTTTCCTACTTTTAACAGGACCAATTCCTTCAAAACATTAGATGTTTCAGAGACAAATTTCTCTGGTAAACTTCCTAGTTCTATCGGAAACCTTCATTCCTTAAATTACTTTGATATCTCATACTGTGGTTTTGATTCCCATGTTCCATCTTCATTTGGAAACCTTACCCAGCTCAATTTCCTTAAGATGGATTCATTTCATGACGTTTCCGCAGGCCAATTCTTAGTTCCTGATTCCTTGTCTTGTTTTGGAAAATTAACCAAGCTCAACCACTTGCGTCTTTCGCATATTAACTTACAAGGGAATTTCCCACGTTTTGTGGCTAACCTCACCCAACTTGTGTTTCTAGACTTGTTTGTCAATTCAATAACTGGTGAAATCCCATCTTGGCTCACATTAGAGTTGACCCAATTAACTTTTCTGCGGCTCACCTATAACGATTTGCAAGGAGCAATTCCTAAGTCGCTTTTCCACCTCAGAAATCTTGAACGTCTTGGCCTTTCCAATAATAATTTGAGTGGATTAGTTGAGTTTGATGAGTTTTCCAACCTCAAAAAGTTGAAGGTACTTGGTTTAGGGGGCAACAAGTTATCTGTGCGTGTCAAATCTAGTTCGAGTGCTACTCTTCCAAAGTTCGAATTTCTAGAGTTGGCTGAATGCAACTTGACAGAGTTTCCAGAATTTTTGAAAAATCAATACGAATTGGGATCCCTAGGCCTTTCTGGTAACAACATTCATGGCCAAATACCAAAATGGCTTTGGAATGGAACTAGAGAAACTCTGGTCAATCTCGACCTCTCTTCAAACTTCTTAACAGGCTTTGAGGAAAATCCAGTCACTCTTCCATGGAAAAATCTGCAGATTTTTAGTCTTGGGACCAATCGGTTACGAGGGTCATTGCCAATTCCACCACAATCTATCACGTCCTACGTTGTCGGCAACAATAATTATAGTGGAGAAGTTTCACCATTGTTCTGCAACTTGAATTATCTTCAAGTTCTTAATTTGGCCAACAACAGCCTGAGTGGCATGCTTCCACGGTGTTTGGGGAAGTCCAGTAGCTTGGAAATGCTGATCTTGACTTATAATTCTTTCCATGGCGATATTCCCCCATTTTGTGCTAACAAAAATAGTTTGAAATTGGTTTCGTTGGGTTACAATTTGTTACAGGGGAAGCTATCGAGATCAATGGCCGATTGCACTCAGTTAGAGTTTCTTAACATTGGCAACAATCAGATCAGTGACATCTTCCCTTCTTGGTTAGGGGTACTTCCAGTATTAAGGGGTCTCATTTTGGGGTCGAATGCATTTCATGGGATAATTGGGAAGCCTCCAACTAATCATGAGTTCCCAAACTTGTGCATAATTGATTTATCCAACAATCTGTTTTCAGGTATGTTGCCTTCTAAGTACATAGAGAACTGGAATTTCATGAAATATGTTGTCGCAAACAAGGGAAGCCGATACTTTCTAGTCTCACTGAACAGCAGCACAAATAAATATGGAAATTACATTGTAGATTCATATAATATGATAATTCCAGTAAAAGGTGTTAAGTTGACATATGATTATACCCCTTATGATATGAGACTTATAGATTTCTCAAGTAATAGATTTGAAGGAGAGATTCCAGAGGGTATCATTGGGAGTCTAAGAGAACTTCAGTTGCTAAACCTCTCCAACAACGCTCTCTCTGGTCACATCCCTTCATCTCTAGGGAACTTAACTGCTCTTGAATCGTTGGATCTCTCTCAAAACAAGCTCTCAGGAATGATCCCCGGTAGCTTGGCACAACTCACTTTCCTTGAGTATTTCAATGTGTCGCATAACCACCTTTGGGGGCAAATACCACTTGGCCAACAATTTGGTACATTCCTAGAAGATTCATACCAAGGAAACTTAGGTCTGTGTGGAAAGCCTTTGTCCAAGAAATGCGAGGGTTCTGAAAGCTCAAGGCTGCCGCCACCATCAAGCTTTGAAGAAGATGAAGAGACTGGATTTACATTTGAGTTTGACTGGTACGTAGTTTTGCCGGGAGTTGTTAGCGGACTAGTAGTGGGAGTGGTTGCTGGAAACACGTTGGCAGACAAGAAGCATGAATGGTTTGTGGAGACATTCAGGAGGAAGAGGAAGTCAACAACTGCACGGGTGACGAGGGGACGCCGAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

986

Amino Acids

109.63

Weight (kDa)

6.9

Isoelectric Point (pI)

36.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 39 - 89 1.3e-06 Leucine rich repeat N-terminal domain
LRR_14 PF23598 99 - 227 9e-07 Leucine-rich repeat region
LRR_14 PF23598 273 - 331 2.2e-06 Leucine-rich repeat region
LRR_14 PF23598 340 - 528 5.8e-10 Leucine-rich repeat region
LRR_8 PF13855 399 - 459 4.5e-07 Leucine rich repeat
LRR_8 PF13855 797 - 850 2e-06 Leucine rich repeat
LRR_8 PF13855 814 - 874 3e-09 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000024)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45616 AT1G47890 AT2G25440 AT2G32660 AT2G32660 AT2G32680 AT2G33020 AT2G33030 AT2G33050 AT2G33060 AT2G33080 AT3G24900 AT3G24900 AT3G24982 AT3G25010 AT3G25010 AT3G25020 AT4G13810 AT4G13810 AT4G13810 AT4G13820 AT4G13880 AT4G13920 AT5G40170
fragaria_vesca FvH4_2g05950 FvH4_3g24110 FvH4_5g04000 FvH4_6g04890 FvH4_6g31760 FvH4_6g40760 FvH4_6g40800 FvH4_6g40820 FvH4_6g40840 FvH4_6g40842 FvH4_6g40843 FvH4_6g40847 FvH4_7g06093 FvH4_7g10111 FvH4_7g10112 FvH4_7g10113 FvH4_7g10114 FvH4_7g10130 FvH4_7g10150 FvH4_7g31280
malus_domestica MD00G1164200.v1.1 MD00G1164300.v1.1 MD01G1109000.v1.1 MD01G1109100.v1.1 MD07G1068900.v1.1 MD07G1069000.v1.1 MD07G1069300.v1.1 MD07G1069600.v1.1 MD07G1106700.v1.1 MD07G1106900.v1.1 MD07G1107200.v1.1 MD07G1107300.v1.1 MD07G1107400.v1.1 MD07G1107800.v1.1 MD09G1124300.v1.1 MD09G1124700.v1.1 MD09G1124800.v1.1 MD09G1124900.v1.1 MD09G1125100.v1.1 MD09G1125300.v1.1 MD09G1125400.v1.1 MD09G1125500.v1.1 MD09G1125600.v1.1 MD09G1130600.v1.1 MD09G1130900.v1.1 MD09G1131100.v1.1 MD17G1115000.v1.1 MD17G1115100.v1.1 MD17G1115300.v1.1 MD17G1115500.v1.1
prunus_persica Prupe.2G128400_v2.0.a1 Prupe.2G128600_v2.0.a1 Prupe.2G128700_v2.0.a1 Prupe.2G130100_v2.0.a1 Prupe.2G130300_v2.0.a1 Prupe.2G130400_v2.0.a1 Prupe.2G130500_v2.0.a1 Prupe.2G130600_v2.0.a1 Prupe.2G130700_v2.0.a1 Prupe.2G130900_v2.0.a1 Prupe.2G131000_v2.0.a1 Prupe.3G094800_v2.0.a1 Prupe.3G094900_v2.0.a1 Prupe.3G195900_v2.0.a1 Prupe.3G196000_v2.0.a1 Prupe.3G196000_v2.0.a1 Prupe.3G199200_v2.0.a1 Prupe.3G199200_v2.0.a1 Prupe.3G199400_v2.0.a1 Prupe.3G199500_v2.0.a1 Prupe.3G199900_v2.0.a1 Prupe.3G200000_v2.0.a1 Prupe.4G168900_v2.0.a1 Prupe.4G232400_v2.0.a1 Prupe.4G233100_v2.0.a1 Prupe.4G233100_v2.0.a1 Prupe.4G233200_v2.0.a1 Prupe.4G233600_v2.0.a1 Prupe.4G234000_v2.0.a1 Prupe.4G234200_v2.0.a1 Prupe.4G279000_v2.0.a1 Prupe.4G279000_v2.0.a1
pyrus_communis pycom01g13640 pycom05g05290 pycom05g05300 pycom05g05310 pycom05g05320 pycom07g05310 pycom07g05920 pycom07g09130 pycom07g09160 pycom07g09190 pycom07g09210 pycom09g04810 pycom09g04820 pycom09g04850 pycom09g04860 pycom09g04870 pycom09g04930 pycom09g04940 pycom09g04960 pycom09g04980 pycom11g17040 pycom11g17080 pycom11g17100 pycom17g10620 pycom17g10640 pycom17g10650 pycom17g10660
rosa_chinensis RchiOBHm_Chr1g0340311 RchiOBHm_Chr1g0340341 RchiOBHm_Chr1g0340351 RchiOBHm_Chr1g0340361 RchiOBHm_Chr1g0340411 RchiOBHm_Chr1g0340481 RchiOBHm_Chr1g0340521 RchiOBHm_Chr1g0340591 RchiOBHm_Chr1g0340631 RchiOBHm_Chr1g0340681 RchiOBHm_Chr1g0344431 RchiOBHm_Chr1g0346361 RchiOBHm_Chr1g0347011 RchiOBHm_Chr1g0347021 RchiOBHm_Chr1g0347031 RchiOBHm_Chr1g0347041 RchiOBHm_Chr1g0347561 RchiOBHm_Chr1g0347571 RchiOBHm_Chr1g0347811 RchiOBHm_Chr1g0347841 RchiOBHm_Chr1g0347861 RchiOBHm_Chr1g0348951 RchiOBHm_Chr1g0357511 RchiOBHm_Chr1g0367531 RchiOBHm_Chr1g0368411 RchiOBHm_Chr2g0154781 RchiOBHm_Chr2g0154841 RchiOBHm_Chr2g0155021 RchiOBHm_Chr2g0155091 RchiOBHm_Chr2g0155101 RchiOBHm_Chr2g0156211 RchiOBHm_Chr2g0156251 RchiOBHm_Chr2g0156281 RchiOBHm_Chr2g0156371 RchiOBHm_Chr2g0156381 RchiOBHm_Chr2g0156411 RchiOBHm_Chr2g0173751 RchiOBHm_Chr3g0494931 RchiOBHm_Chr4g0385161 RchiOBHm_Chr4g0385171 RchiOBHm_Chr4g0408231 RchiOBHm_Chr4g0408241 RchiOBHm_Chr5g0005251 RchiOBHm_Chr5g0030911 RchiOBHm_Chr5g0042831 RchiOBHm_Chr5g0042871 RchiOBHm_Chr5g0042881 RchiOBHm_Chr5g0043081 RchiOBHm_Chr5g0043131 RchiOBHm_Chr5g0043361 RchiOBHm_Chr5g0043371 RchiOBHm_Chr5g0043381 RchiOBHm_Chr5g0083391 RchiOBHm_Chr5g0083401 RchiOBHm_Chr5g0083441 RchiOBHm_Chr5g0083451 RchiOBHm_Chr5g0083461 RchiOBHm_Chr5g0083471 RchiOBHm_Chr5g0083501 RchiOBHm_Chr5g0083531 RchiOBHm_Chr5g0083601 RchiOBHm_Chr5g0083611 RchiOBHm_Chr5g0083651 RchiOBHm_Chr6g0257441 RchiOBHm_Chr6g0257601 RchiOBHm_Chr6g0257621 RchiOBHm_Chr6g0257631 RchiOBHm_Chr6g0263371 RchiOBHm_Chr6g0263391 RchiOBHm_Chr6g0263401 RchiOBHm_Chr6g0263411
rosa_laevigata RLG00000003361 RLG00000008615 RLG00000010252 RLG00000014349 RLG00000014351 RLG00000014359 RLG00000014696 RLG00000014706 RLG00000014711 RLG00000014712 RLG00000018865 RLG00000020803 RLG00000020804 RLG00000020808 RLG00000020811 RLG00000020812 RLG00000020816 RLG00000020817 RLG00000020818 RLG00000020896 RLG00000020902 RLG00000020904 RLG00000020905 RLG00000020906 RLG00000020907 RLG00000020908 RLG00000020909 RLG00000020910 RLG00000022216 RLG00000022218 RLG00000027211 RLG00000027212 RLG00000027213 RLG00000027214 RLG00000028474 RLG00000028475 RLG00000028613 RLG00000028708 RLG00000028709 RLG00000028737 RLG00000028738 RLG00000028764 RLG00000029010 RLG00000029012 RLG00000029019 RLG00000029022 RLG00000029025 RLG00000029027 RLG00000029031 RLG00000029035 RLG00000029141 RLG00000030130 RLG00000033005 RLG00000033271 RLG00000034150 RLG00000034153 RLG00000034158 RLG00000034160 RLG00000034164 RLG00000034166 RLG00000034167 RLG00000034183 RLG00000037034 RLG00000037035
rosa_multiflora Rmu_co8046282.1_g000001 Rmu_co8137732.1_g000001 Rmu_co8267491.1_g000001 Rmu_co8329695.1_g000001 Rmu_co8330005.1_g000001 Rmu_co8351095.1_g000001 Rmu_co8357797.1_g000001 Rmu_co8424479.1_g000001 Rmu_co8425575.1_g000001 Rmu_co8485497.1_g000001 Rmu_sc0000060.1_g000020 Rmu_sc0000260.1_g000009 Rmu_sc0000565.1_g000006 Rmu_sc0000566.1_g000023 Rmu_sc0000566.1_g000025 Rmu_sc0000566.1_g000031 Rmu_sc0000566.1_g000033 Rmu_sc0000566.1_g000036 Rmu_sc0000566.1_g000045 Rmu_sc0000566.1_g000048 Rmu_sc0000698.1_g000009 Rmu_sc0000698.1_g000031 Rmu_sc0000820.1_g000049 Rmu_sc0001099.1_g000008 Rmu_sc0001167.1_g000009 Rmu_sc0001167.1_g000070 Rmu_sc0001205.1_g000014 Rmu_sc0001444.1_g000008 Rmu_sc0001836.1_g000017 Rmu_sc0001836.1_g000021 Rmu_sc0001836.1_g000065 Rmu_sc0001974.1_g000014 Rmu_sc0002048.1_g000006 Rmu_sc0002048.1_g000018 Rmu_sc0002048.1_g000034 Rmu_sc0002079.1_g000008 Rmu_sc0002079.1_g000012 Rmu_sc0002079.1_g000034 Rmu_sc0002161.1_g000018 Rmu_sc0002245.1_g000018 Rmu_sc0002245.1_g000040 Rmu_sc0002538.1_g000004 Rmu_sc0002595.1_g000003 Rmu_sc0002595.1_g000004 Rmu_sc0002709.1_g000027 Rmu_sc0002709.1_g000043 Rmu_sc0003086.1_g000004 Rmu_sc0003188.1_g000002 Rmu_sc0003188.1_g000003 Rmu_sc0003301.1_g000003 Rmu_sc0003522.1_g000040 Rmu_sc0003785.1_g000004 Rmu_sc0003918.1_g000002 Rmu_sc0003918.1_g000015 Rmu_sc0004325.1_g000017 Rmu_sc0004355.1_g000007 Rmu_sc0004976.1_g000006 Rmu_sc0004976.1_g000010 Rmu_sc0004976.1_g000024 Rmu_sc0005144.1_g000016 Rmu_sc0005167.1_g000002 Rmu_sc0005451.1_g000002 Rmu_sc0006217.1_g000004 Rmu_sc0006908.1_g000027 Rmu_sc0008148.1_g000016 Rmu_sc0008148.1_g000044 Rmu_sc0008148.1_g000047 Rmu_sc0008734.1_g000012 Rmu_sc0008734.1_g000017 Rmu_sc0010137.1_g000014 Rmu_sc0010308.1_g000003 Rmu_sc0010719.1_g000001 Rmu_sc0014922.1_g000001 Rmu_sc0020148.1_g000001 Rmu_sc0024761.1_g000002 Rmu_sc0024761.1_g000003 Rmu_sc0027638.1_g000002 Rmu_sc0030439.1_g000001 Rmu_sc0033559.1_g000001 Rmu_sc0036789.1_g000001 Rmu_ssc0000173.1_g000015 Rmu_ssc0000245.1_g000025 Rmu_ssc0000342.1_g000001
rosa_roxburghii Rroxscaffold_1G00000980 Rroxscaffold_1G00000990 Rroxscaffold_1G00001050 Rroxscaffold_1G00001070 Rroxscaffold_1G00037490 Rroxscaffold_1G00037600 Rroxscaffold_1G00037640 Rroxscaffold_1G00037680 Rroxscaffold_1G00037700 Rroxscaffold_1G00037720 Rroxscaffold_1G00037780 Rroxscaffold_1G00037810 Rroxscaffold_2G00078660 Rroxscaffold_2G00093050 Rroxscaffold_2G00093070 Rroxscaffold_2G00093120 Rroxscaffold_2G00093140 Rroxscaffold_2G00093950 Rroxscaffold_2G00093980 Rroxscaffold_2G00093990 Rroxscaffold_2G00094050 Rroxscaffold_2G00094080 Rroxscaffold_2G00125300 Rroxscaffold_3G00218210 Rroxscaffold_4G00288530 Rroxscaffold_4G00288580 Rroxscaffold_4G00306260 Rroxscaffold_4G00306350 Rroxscaffold_4G00306420 Rroxscaffold_4G00307420 Rroxscaffold_4G00307660 Rroxscaffold_4G00307690 Rroxscaffold_4G00307720 Rroxscaffold_4G00311180 Rroxscaffold_4G00311220 Rroxscaffold_4G00311240 Rroxscaffold_4G00315940 Rroxscaffold_4G00315950 Rroxscaffold_5G00333080 Rroxscaffold_7G00208670 Rroxscaffold_7G00208690 Rroxscaffold_7G00208700 Rroxscaffold_7G00208710 Rroxscaffold_7G00208830 Rroxscaffold_7G00208840 Rroxscaffold_7G00208860
rosa_rugosa Rorug01G0052800 Rorug01G0052900 Rorug01G0084800 Rorug01G0162300.1 Rorug01G0162600.1 Rorug01G0162700.1 Rorug01G0163100.1 Rorug01G0163300.1 Rorug01G0163800.1 Rorug01G0163900.1 Rorug01G0164200.1 Rorug01G0164400.1 Rorug01G0187700 Rorug01G0187800 Rorug01G0189400 Rorug01G0189500 Rorug01G0189600 Rorug01G0189800 Rorug01G0190200 Rorug01G0190300 Rorug01G0198800 Rorug01G0341700 Rorug02G0445100 Rorug02G0445300 Rorug02G0445400 Rorug02G0452600 Rorug02G0452700 Rorug02G0452800 Rorug02G0453000 Rorug02G0522500 Rorug02G0572500 Rorug05G0203900 Rorug05G0204100 Rorug05G0204200 Rorug05G0204400 Rorug05G0205500 Rorug05G0205600 Rorug05G0484800 Rorug05G0484800 Rorug05G0484900 Rorug05G0570000 Rorug05G0570100 Rorug05G0570200 Rorug05G0570300.1 Rorug05G0570800 Rorug05G0570900 Rorug05G0572200 Rorug05G0572500
rosa_samantha Rh1AG178100 Rh1AG178500 Rh1AG178800 Rh1AG206800 Rh1AG207200 Rh1AG207700 Rh1AG348900 Rh2AG316000 Rh2BG522100 Rh2BG522400 Rh2BG530500 Rh2BG531000 Rh3AG317700 Rh4CG003500 Rh5AG289600 Rh5BG293800 Rh5BG294000 Rh5BG295500 Rh5BG296000 Rh5BG296300 Rh5BG297800 Rh5DG303900 Rh5DG305200 Rh5DG305500 Rh6AG126500
rosa_wichuraiana Rw0G002430 Rw0G013640 Rw1G014810 Rw1G014830 Rw1G014860 Rw1G014870 Rw1G014910 Rw1G017200 Rw1G017210 Rw1G017300 Rw1G017610 Rw1G017670 Rw1G017710 Rw1G017730 Rw1G018330 Rw1G018440 Rw1G031010 Rw1G031040 Rw1G031060 Rw2G042020 Rw2G042760 Rw2G042790 Rw2G042800 Rw2G053460 Rw2G053470 Rw4G000600 Rw5G019620 Rw5G027010 Rw5G049870 Rw5G050460 Rw5G050530 Rw6G007730 Rw6G007740 Rw6G007770 Rw6G007860 Rw6G010660 Rw6G010800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1872
AasI GACNNNNNNGTC 1 cut(s) 1142
AccI GTMKAC 1 cut(s) 518
AciI CCGC 5 cut(s) 272, 996, 1210, 2747, 2832
AclWI GGATC 5 cut(s) 184, 1488, 1501, 2538, 2554
AcoI YGGCCR 6 cut(s) 280, 478, 1525, 1794, 1977, 2641
AcsI RAATTY 9 cut(s) 483, 495, 710, 739, 841, 1090, 1424, 1466, 2212
AcuI CTGAAG 1 cut(s) 2432
AcyI GRCGYC 1 cut(s) 2947
AfaI GTAC 6 cut(s) 761, 1353, 2055, 2198, 2656, 2807
AfiI CCNNNNNNNGG 3 cut(s) 973, 2333, 2623
AflII CTTAAG 1 cut(s) 968
AflIII ACRYGT 1 cut(s) 2862
AhlI ACTAGT 1 cut(s) 2836
AjiI CACGTC 1 cut(s) 1710
AjuI GAANNNNNNNTTGG 6 cut(s) 996, 1028, 1113, 1145, 1188, 1220
Alw26I GTCTC 7 cut(s) 320, 830, 2078, 2266, 2368, 2771, 2891
AlwI GGATC 5 cut(s) 184, 1488, 1501, 2538, 2554
AlwNI CAGNNNCTG 1 cut(s) 173
Ama87I CYCGRG 1 cut(s) 213
ApeKI GCWGC 2 cut(s) 2274, 2743
ApoI RAATTY 9 cut(s) 483, 495, 710, 739, 841, 1090, 1424, 1466, 2212
AspA2I CCTAGG 1 cut(s) 1498
AspS9I GGNCC 3 cut(s) 424, 804, 1662
AsuC2I CCSGG 2 cut(s) 2565, 2820
AsuHPI GGTGA 6 cut(s) 334, 1108, 1172, 1207, 1743, 2947
AsuII TTCGAA 1 cut(s) 1422
AvaI CYCGRG 1 cut(s) 213
AvaII GGWCC 2 cut(s) 804, 1662
AvrII CCTAGG 1 cut(s) 1498
BalI TGGCCA 4 cut(s) 480, 1527, 1796, 2643
BamHI GGATCC 1 cut(s) 1493
BanII GRGCYC 1 cut(s) 214
BarI GAAGNNNNNNTAC 2 cut(s) 2173, 2205
BbsI GAAGAC 1 cut(s) 32
BbvI GCAGC 2 cut(s) 2286, 2730
BccI CCATC 8 cut(s) 248, 421, 496, 572, 940, 967, 1177, 2761
BceAI ACGGC 1 cut(s) 267
BcnI CCSGG 2 cut(s) 2565, 2820
BcoDI GTCTC 7 cut(s) 320, 830, 2078, 2266, 2368, 2771, 2891
BcuI ACTAGT 1 cut(s) 2836
BfmI CTRYAG 1 cut(s) 1643
BfrI CTTAAG 1 cut(s) 968
BglI GCCNNNNNGGC 1 cut(s) 1812
BisI GCNGC 4 cut(s) 1211, 2275, 2744, 2747
BlnI CCTAGG 1 cut(s) 1498
BlsI GCNGC 4 cut(s) 1212, 2276, 2745, 2748
Bme1390I CCNGG 2 cut(s) 2565, 2820
Bme18I GGWCC 2 cut(s) 804, 1662
BmeT110I CYCGRG 1 cut(s) 213
BmgBI CACGTC 1 cut(s) 1710
BmgT120I GGNCC 3 cut(s) 424, 804, 1662
BmiI GGNNCC 2 cut(s) 1495, 1663
BmrFI CCNGG 2 cut(s) 2565, 2820
BmrI ACTGGG 1 cut(s) 710
BmsI GCATC 2 cut(s) 212, 671
BmuI ACTGGG 1 cut(s) 710
BpiI GAAGAC 1 cut(s) 32
BplI GAGNNNNNCTC 2 cut(s) 1393, 1425
Bpu10I CCTNAGC 1 cut(s) 554
Bpu14I TTCGAA 1 cut(s) 1422
BpuEI CTTGAG 4 cut(s) 287, 2374, 2612, 2722
BpuMI CCSGG 2 cut(s) 2565, 2820
BsaAI YACGTR 1 cut(s) 2809
BsaBI GATNNNNATC 1 cut(s) 228
BsaHI GRCGYC 1 cut(s) 2947
BsaI GGTCTC 1 cut(s) 2078
BsaJI CCNNGG 6 cut(s) 1498, 1631, 1823, 1882, 2563, 2677
Bsc4I CCNNNNNNNGG 3 cut(s) 973, 2333, 2623
Bse1I ACTGG 9 cut(s) 716, 1162, 1619, 1842, 2060, 2213, 2327, 2785, 2807
Bse3DI GCAATG 1 cut(s) 1682
Bse8I GATNNNNATC 1 cut(s) 228
BseDI CCNNGG 6 cut(s) 1498, 1631, 1823, 1882, 2563, 2677
BseGI GGATG 2 cut(s) 259, 2487
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 3 cut(s) 973, 2333, 2623
BseMI GCAATG 1 cut(s) 1682
BseMII CTCAG 6 cut(s) 104, 396, 1276, 1799, 2003, 2565
BseNI ACTGG 9 cut(s) 716, 1162, 1619, 1842, 2060, 2213, 2327, 2785, 2807
BseRI GAGGAG 1 cut(s) 761
BseXI GCAGC 2 cut(s) 2286, 2730
BseYI CCCAGC 1 cut(s) 954
BsgI GTGCAG 2 cut(s) 104, 2913
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 2 cut(s) 2565, 2819
BslFI GGGAC 1 cut(s) 1675
BslI CCNNNNNNNGG 3 cut(s) 973, 2333, 2623
BsmAI GTCTC 7 cut(s) 320, 830, 2078, 2266, 2368, 2771, 2891
BsmFI GGGAC 1 cut(s) 1675
BsmI GAATGC 3 cut(s) 121, 1448, 2095
Bso31I GGTCTC 1 cut(s) 2078
BsoBI CYCGRG 1 cut(s) 213
Bsp119I TTCGAA 1 cut(s) 1422
Bsp1286I GDGCHC 1 cut(s) 214
Bsp143I GATC 8 cut(s) 176, 223, 1493, 1860, 1970, 2022, 2530, 2559
Bsp19I CCATGG 2 cut(s) 1631, 1882
BspACI CCGC 5 cut(s) 272, 996, 1210, 2747, 2832
BspCNI CTCAG 6 cut(s) 103, 395, 1275, 1800, 2002, 2564
BspHI TCATGA 4 cut(s) 567, 985, 2128, 2217
BspLI GGNNCC 2 cut(s) 1495, 1663
BspMAI CTGCAG 1 cut(s) 1647
BspPI GGATC 5 cut(s) 184, 1488, 1501, 2538, 2554
BspT104I TTCGAA 1 cut(s) 1422
BspTI CTTAAG 1 cut(s) 968
BspTNI GGTCTC 1 cut(s) 2078
BsrDI GCAATG 1 cut(s) 1682
BsrI ACTGG 9 cut(s) 716, 1162, 1619, 1842, 2060, 2213, 2327, 2785, 2807
BssECI CCNNGG 6 cut(s) 1498, 1631, 1823, 1882, 2563, 2677
BssMI GATC 8 cut(s) 176, 223, 1493, 1860, 1970, 2022, 2530, 2559
BssNI GRCGYC 1 cut(s) 2947
BssT1I CCWWGG 4 cut(s) 1498, 1631, 1882, 2677
Bst4CI ACNGT 6 cut(s) 71, 242, 516, 640, 911, 1827
Bst6I CTCTTC 6 cut(s) 353, 1416, 1591, 1632, 2769, 2906
BstACI GRCGYC 1 cut(s) 2947
BstAFI CTTAAG 1 cut(s) 968
BstBAI YACGTR 1 cut(s) 2809
BstBI TTCGAA 1 cut(s) 1422
BstC8I GCNNGC 2 cut(s) 1000, 1817
BstDSI CCRYGG 3 cut(s) 1631, 1823, 1882
BstF5I GGATG 2 cut(s) 259, 2487
BstKTI GATC 8 cut(s) 179, 226, 1496, 1863, 1973, 2025, 2533, 2562
BstMAI GTCTC 7 cut(s) 320, 830, 2078, 2266, 2368, 2771, 2891
BstMBI GATC 8 cut(s) 176, 223, 1493, 1860, 1970, 2022, 2530, 2559
BstMWI GCNNNNNNNGC 3 cut(s) 209, 1069, 1812
BstNSI RCATGY 1 cut(s) 1819
BstSCI CCNGG 2 cut(s) 2563, 2818
BstSFI CTRYAG 1 cut(s) 1643
BstSNI TACGTA 1 cut(s) 2809
BstV1I GCAGC 2 cut(s) 2286, 2730
BstV2I GAAGAC 1 cut(s) 32
BstX2I RGATCY 3 cut(s) 176, 1493, 2530
BstXI CCANNNNNNTGG 2 cut(s) 1849, 2651
BstYI RGATCY 3 cut(s) 176, 1493, 2530
BtgI CCRYGG 3 cut(s) 1631, 1823, 1882
BtrI CACGTC 1 cut(s) 1710
BtsCI GGATG 2 cut(s) 259, 2487
BtsIMutI CAGTG 5 cut(s) 67, 111, 636, 2032, 2264
Cac8I GCNNGC 2 cut(s) 1000, 1817
CaiI CAGNNNCTG 1 cut(s) 173
CciI TCATGA 4 cut(s) 567, 985, 2128, 2217
Cfr13I GGNCC 3 cut(s) 424, 804, 1662
CseI GACGC 1 cut(s) 1052
Csp6I GTAC 6 cut(s) 760, 1352, 2054, 2197, 2655, 2806
CspCI CAANNNNNGTGG 2 cut(s) 1812, 1847
CviQI GTAC 6 cut(s) 760, 1352, 2054, 2197, 2655, 2806
DpnI GATC 8 cut(s) 178, 225, 1495, 1862, 1972, 2024, 2532, 2561
DpnII GATC 8 cut(s) 176, 223, 1493, 1860, 1970, 2022, 2530, 2559
DrdI GACNNNNNNGTC 1 cut(s) 1142
DseDI GACNNNNNNGTC 1 cut(s) 1142
EaeI YGGCCR 6 cut(s) 280, 478, 1525, 1794, 1977, 2641
Eam1104I CTCTTC 6 cut(s) 353, 1416, 1591, 1632, 2769, 2906
EarI CTCTTC 6 cut(s) 353, 1416, 1591, 1632, 2769, 2906
Eco105I TACGTA 1 cut(s) 2809
Eco130I CCWWGG 4 cut(s) 1498, 1631, 1882, 2677
Eco147I AGGCCT 1 cut(s) 1503
Eco24I GRGCYC 1 cut(s) 214
Eco31I GGTCTC 1 cut(s) 2078
Eco32I GATATC 2 cut(s) 649, 901
Eco47I GGWCC 2 cut(s) 804, 1662
Eco57I CTGAAG 1 cut(s) 2432
Eco88I CYCGRG 1 cut(s) 213
EcoRI GAATTC 1 cut(s) 710
EcoRV GATATC 2 cut(s) 649, 901
EcoT14I CCWWGG 4 cut(s) 1498, 1631, 1882, 2677
EcoT22I ATGCAT 1 cut(s) 2095
EcoT38I GRGCYC 1 cut(s) 214
ErhI CCWWGG 4 cut(s) 1498, 1631, 1882, 2677
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FaqI GGGAC 1 cut(s) 1675
FauNDI CATATG 1 cut(s) 2350
FblI GTMKAC 1 cut(s) 518
Fnu4HI GCNGC 4 cut(s) 1211, 2275, 2744, 2747
FokI GGATG 2 cut(s) 266, 2474
FriOI GRGCYC 1 cut(s) 214
Fsp4HI GCNGC 4 cut(s) 1211, 2275, 2744, 2747
GluI GCNGC 4 cut(s) 1211, 2275, 2744, 2747
GsaI CCCAGC 1 cut(s) 958
HapII CCGG 2 cut(s) 2565, 2819
HgaI GACGC 1 cut(s) 1052
Hin1I GRCGYC 1 cut(s) 2947
HincII GTYRAC 4 cut(s) 658, 1191, 2346, 2922
HindII GTYRAC 4 cut(s) 658, 1191, 2346, 2922
HindIII AAGCTT 3 cut(s) 148, 371, 2758
HpaII CCGG 2 cut(s) 2565, 2819
HphI GGTGA 6 cut(s) 334, 1108, 1172, 1207, 1743, 2947
Hpy166II GTNNAC 8 cut(s) 24, 361, 519, 658, 854, 1191, 2346, 2922
Hpy8I GTNNAC 8 cut(s) 24, 361, 519, 658, 854, 1191, 2346, 2922
HpyAV CCTTC 9 cut(s) 136, 212, 823, 887, 1342, 2049, 2199, 2399, 2502
HpyCH4III ACNGT 6 cut(s) 71, 242, 516, 640, 911, 1827
HpyCH4IV ACGT 7 cut(s) 990, 1099, 1276, 1709, 1716, 2808, 2864
HpyF10VI GCNNNNNNNGC 3 cut(s) 209, 1069, 1812
HpySE526I ACGT 7 cut(s) 990, 1099, 1276, 1709, 1716, 2808, 2864
Hsp92I GRCGYC 1 cut(s) 2947
Kzo9I GATC 8 cut(s) 176, 223, 1493, 1860, 1970, 2022, 2530, 2559
LmnI GCTCC 3 cut(s) 550, 748, 1235
Lsp1109I GCAGC 2 cut(s) 2286, 2730
LweI GCATC 2 cut(s) 212, 671
MaeII ACGT 7 cut(s) 990, 1099, 1276, 1709, 1716, 2808, 2864
MalI GATC 8 cut(s) 178, 225, 1495, 1862, 1972, 2024, 2532, 2561
MboI GATC 8 cut(s) 176, 223, 1493, 1860, 1970, 2022, 2530, 2559
MflI RGATCY 3 cut(s) 176, 1493, 2530
MhlI GDGCHC 1 cut(s) 214
MlsI TGGCCA 4 cut(s) 480, 1527, 1796, 2643
MluNI TGGCCA 4 cut(s) 480, 1527, 1796, 2643
MlyI GAGTC 4 cut(s) 82, 284, 448, 2443
MmeI TCCRAC 7 cut(s) 360, 376, 1356, 2144, 2187, 2490, 2508
Mox20I TGGCCA 4 cut(s) 480, 1527, 1796, 2643
Mph1103I ATGCAT 1 cut(s) 2095
MscI TGGCCA 4 cut(s) 480, 1527, 1796, 2643
MslI CAYNNNNRTG 1 cut(s) 615
Msp20I TGGCCA 4 cut(s) 480, 1527, 1796, 2643
MspCI CTTAAG 1 cut(s) 968
MspI CCGG 2 cut(s) 2565, 2819
MspR9I CCNGG 2 cut(s) 2565, 2820
Mva1269I GAATGC 3 cut(s) 121, 1448, 2095
MwoI GCNNNNNNNGC 3 cut(s) 209, 1069, 1812
NciI CCSGG 2 cut(s) 2565, 2820
NcoI CCATGG 2 cut(s) 1631, 1882
NdeI CATATG 1 cut(s) 2350
NdeII GATC 8 cut(s) 176, 223, 1493, 1860, 1970, 2022, 2530, 2559
NlaIV GGNNCC 2 cut(s) 1495, 1663
NmuCI GTSAC 4 cut(s) 1621, 2027, 2483, 2935
NsiI ATGCAT 1 cut(s) 2095
NspI RCATGY 1 cut(s) 1819
NspV TTCGAA 1 cut(s) 1422
PaeI GCATGC 1 cut(s) 1819
PaeR7I CTCGAG 1 cut(s) 213
PagI TCATGA 4 cut(s) 567, 985, 2128, 2217
PceI AGGCCT 1 cut(s) 1503
PctI GAATGC 3 cut(s) 121, 1448, 2095
PfeI GAWTC 9 cut(s) 5, 573, 920, 977, 1019, 2306, 2413, 2522, 2669
PkrI GCNGC 4 cut(s) 1212, 2276, 2745, 2748
PleI GAGTC 4 cut(s) 82, 283, 447, 2442
PpsI GAGTC 4 cut(s) 82, 283, 447, 2442
Ppu21I YACGTR 1 cut(s) 2809
PsiI TTATAA 1 cut(s) 1872
PspFI CCCAGC 1 cut(s) 954
PspN4I GGNNCC 2 cut(s) 1495, 1663
PspPI GGNCC 3 cut(s) 424, 804, 1662
PsrI GAACNNNNNNTAC 2 cut(s) 229, 261
PstI CTGCAG 1 cut(s) 1647
PstNI CAGNNNCTG 1 cut(s) 173
PsuI RGATCY 3 cut(s) 176, 1493, 2530
RsaI GTAC 6 cut(s) 761, 1353, 2055, 2198, 2656, 2807
RsaNI GTAC 6 cut(s) 760, 1352, 2054, 2197, 2655, 2806
RseI CAYNNNNRTG 1 cut(s) 615
SatI GCNGC 4 cut(s) 1211, 2275, 2744, 2747
Sau3AI GATC 8 cut(s) 176, 223, 1493, 1860, 1970, 2022, 2530, 2559
Sau96I GGNCC 3 cut(s) 424, 804, 1662
SchI GAGTC 4 cut(s) 82, 284, 448, 2443
ScrFI CCNGG 2 cut(s) 2565, 2820
SduI GDGCHC 1 cut(s) 214
SfaNI GCATC 2 cut(s) 212, 671
SfcI CTRYAG 1 cut(s) 1643
Sfr274I CTCGAG 1 cut(s) 213
SfuI TTCGAA 1 cut(s) 1422
SinI GGWCC 2 cut(s) 804, 1662
SlaI CTCGAG 1 cut(s) 213
SmiMI CAYNNNNRTG 1 cut(s) 615
SmlI CTYRAG 6 cut(s) 213, 302, 968, 2389, 2591, 2737
SmoI CTYRAG 6 cut(s) 213, 302, 968, 2389, 2591, 2737
SnaBI TACGTA 1 cut(s) 2809
SpeI ACTAGT 1 cut(s) 2836
SphI GCATGC 1 cut(s) 1819
SseBI AGGCCT 1 cut(s) 1503
SsiI CCGC 5 cut(s) 272, 996, 1210, 2747, 2832
StuI AGGCCT 1 cut(s) 1503
StyD4I CCNGG 2 cut(s) 2563, 2818
StyI CCWWGG 4 cut(s) 1498, 1631, 1882, 2677
TaaI ACNGT 6 cut(s) 71, 242, 516, 640, 911, 1827
TaiI ACGT 7 cut(s) 993, 1102, 1279, 1712, 1719, 2811, 2867
TaqI TCGA 9 cut(s) 214, 416, 437, 764, 1400, 1422, 1578, 1967, 2087
TatI WGTACW 2 cut(s) 759, 2196
TauI GCSGC 2 cut(s) 1213, 2749
TfiI GAWTC 9 cut(s) 5, 573, 920, 977, 1019, 2306, 2413, 2522, 2669
TscAI CASTG 5 cut(s) 74, 118, 643, 2032, 2271
TseFI GTSAC 4 cut(s) 1621, 2027, 2483, 2935
TseI GCWGC 2 cut(s) 2274, 2743
Tsp45I GTSAC 4 cut(s) 1621, 2027, 2483, 2935
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 5 cut(s) 74, 118, 643, 2032, 2271
Vha464I CTTAAG 1 cut(s) 968
VpaK11BI GGWCC 2 cut(s) 804, 1662
XapI RAATTY 9 cut(s) 483, 495, 710, 739, 841, 1090, 1424, 1466, 2212
XbaI TCTAGA 2 cut(s) 1132, 1429
XceI RCATGY 1 cut(s) 1819
XcmI CCANNNNNNNNNTGG 2 cut(s) 275, 1542
XhoI CTCGAG 1 cut(s) 213
XmaJI CCTAGG 1 cut(s) 1498
XmiI GTMKAC 1 cut(s) 518
Zsp2I ATGCAT 1 cut(s) 2095
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.