RchiOBHm_Chr6g0257621

Receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000024
Physical Location & Seq
Forward (+)
12997428 .. 13000433
3006 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23106

Sequence Viewer

Length: 3006 bp
ATGGGGCTATCACTGAGCTTGTGGACTAGTCGCATGCTTTCGAAACGAGTAATTCTCTTCATGTTTCATATCTTGGTTATTGCCAACTCTTTACACTCTCTGCAGCAGCCATCATCTTCCTGCCATGACGAGGAGAGCTTCGCCTTGCTCCAGTTTAAGCAAAGCTTTGTCATCAACGAATCTGCTTCTGTTGGTGAGGGTGCTTATCCAAAGGTTTTGTCATGGAAACCAGCTGCTGCTAAAGGATGCTGCTCATGGGACGGGGTCGAGTGTGATGAGAAGACAGGTCGTGTGATTGGACTTGATCTTAGTAGTAGCTGTCTCTCCGGCTTTATCAGCTCCAACAACACCCTCTTCCACCTTGTTTATCTTCAGAGCCTGAACCTTGCCGACAATGACTTCAATCAATCTCAAATTCCTAATACCATCAGGAATTTTCCAATGCTCCGTTATCTTAACCTTTCTGGCAGTTTCTTTTCTGGTCAAATCCCATCTGAAATTTCTCACTTGCCCAAATTGTTGTCGCTGGATCTATCCTCCAGTATTTATAGGAGTAACGGTGAAAGATCACTGAAGCTAAACCAGTCTGATCTAAGAAGGCTAGTTCAAAACTTAACTAGTCTAGAAAAGCTTCATCTCAGCTCCGTCACCATTTCTGCACCAGTACCGGATTCCATTGCAAATTTATCATTACTGACATCTCTCCTCCTAGAGAAATGTGAGCTTCTAGGCGAATTCCCGGTGAGTATTTTGAAATTACAGAATTTAAAATTTCTTAATGTAGAAGCCAATCCAGATCTCACAGTTTCTTTGCCAGTATTTCAACAAACTAGTCCTCTCATGTCACTGAGAGTTTCCGGAACAAGGTTTTCAGGAGACCTCCCTTCTTCAATTGAAAAGCTTGATTCATTGATTGAGTTAGTTGCTAGTGGATGCAATTTTTCAGGGTTGCTTCCATCTTCACTTGGTAATCTTAGGCACCTGGTTTATTTAGACCTTTCAAATAACACACTTTCTGGCTCAATCCCTGATTCTTTGGCGACCCTTACCCAACTGTCACATCTGTCACTTAATGATAATCAGTTCAGTGGTTACATCCCATCTTCTCTAGGAAACCTTACCCAGCTCACTGAGTTAGACCTTTCTGGTAATGATTTCGGGGGTTACATCCCGTCTTCCATTGGAAATCTCAACCAGCTCGTAAGACTTTCGCTTTCTATGAATCAATTAACTGGGCCAATCCCCTCTTCACTAGGAAATCTTAGCAAGCTAGCTAACTTAGATCTTTCGTCAAATAATTTGCACAGTTCCATTCCTGAGTCCTTATCCAATCTCTCGAATCTCGAGATGCTTCATCTAGAGAGTAATAGTCTGAGCGGAAAAGTGAATTTCAACATGTTTCTAAAGCTGCAAAATCTCGTCAGACTGCATTTATCTGGAAATAAATTGGAATTATTGCTCGAAGAGACAAGATTTATGAATGCAACAACAACTTTTGCAAAGTTCGTAGCTCTGGGATTGGGTTCTTGCAACATAACAGAGTTCCCAAGTTTCCTAAGATATCAACAAAATTTGCGATGGCTGGATCTTGCTGAAAATGGAATGCACGGCCAAGTACCGAGATGGATGTGGAATGTAAGCACAGAAAGTTTGACACTCATGAACATTTCTCATAACTTCCTTTCTGGCTTTGACCATCCTCCAGTTGTTCTTTCGTGGAGCGGCCTACAAATGTTGGATCTTTCGTACAACATGATTCAGGGATCAGTACTGATACCTTCACCATCCATCGAGTACTATCTAATTTCAGACAACGGGCTAAGTGGACAAGTTTCACCTTTGATTTGCACTCTGACTTCTCTGAAGTACCTTGATTTGTCAAACAACAAGTTGAGTGGGATGCTTCCGCAGTGTCTCGGGAACTTCAGTGATAATTTGCGAGTTCTAGACCTTAGAAAGAACTCTTTTGAAGGCCATCTCCCGCAAACATACACGAGAAATTTGACGATGTTTGATGTTAGTGATAACAAATTGCAGGGGATATTACCAAGGTCGTTGGCGAATTGTGTGATGCTCCAGTTTCTTGTTCTGTCAAACAATGAATTCAATGATGTTTTCCCCTTTTGGTTGGGGACTCTCCCGGAGTTGAAACTTTTGGCAATGCATCAGAATGCGTTCCACGGTGTGATTAGGAAACCTGAAAAGAATCTTGATCATTTTCTTGAGTTGCGCATTCTTGATCTATCTGCTAATAATTTCTCAGGCAACTTCCCCTTTGAATACATCTTCTCTGGAAATGCAATCAAAGGTACCGATTCGTATCGGTTCAGATACATGAGGTTGAATACAAGCTCAGATTATGGTTATGGTCCATATGTTGGCGGGTATTGCTCCTTCACATTGACAAATAAAGGTGTGAACATATTCTATCCCAAGATTCCAGAGAACTTGGCAGCCATTGACATCTCAAGCAACAGATTTGAAGGGAGGGTTCCTGAATTCATTGGGACCCTGACGGGGCTTCGTTTGCTCAATATGTCCAACAACATACTCACTGGTTTGATCCCCTCATCCTTGGGAAAATTAAAGTTGCTTGAATCGTTGGACCTTTCACAGAACAAACTCTCAGGGGAGATCCCTCCACAACTGACACAAATTTCATTCCTTTCAAAATTCAATGTCTCTCACAACAATCTCAGTGGTCCTATTCCTCTTGGAACCCAGTTTGCTACATTTGACAGCACTTCATATGAAGGAAACCTGGGGTTGTGTGGAGATCCACTGCCAAAGAAATGTGGCAATGAAGCTCCTCGATTGATACCTTCAACAGAAGAAGAAAATGGTTCTGATTTTGGAAATGAATTGGATTGGAAATTTGTTCTGGCAGGATCTGTGAGTGGGTTGCTAGTTGGAGTGGTTCTTGCAGACGTCCTCGTCACAAGGAAGCGCGAGTATTTCCTTAAGATTGTGGGGATGCTAATCAGACTAATGAAAAAGGAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

1001

Amino Acids

110.59

Weight (kDa)

6.06

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 42 - 92 1.3e-06 Leucine rich repeat N-terminal domain
LRR_14 PF23598 283 - 382 3e-10 Leucine-rich repeat region
LRR_8 PF13855 310 - 362 2.4e-06 Leucine rich repeat
LRR_8 PF13855 326 - 386 5.9e-08 Leucine rich repeat
LRR_14 PF23598 366 - 557 3.8e-11 Leucine-rich repeat region
LRR_8 PF13855 399 - 458 1.4e-06 Leucine rich repeat
LRR_8 PF13855 423 - 483 1.2e-06 Leucine rich repeat
LRR_8 PF13855 645 - 701 8.6e-07 Leucine rich repeat
LRR_8 PF13855 816 - 875 3.3e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000024)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45616 AT1G47890 AT2G25440 AT2G32660 AT2G32660 AT2G32680 AT2G33020 AT2G33030 AT2G33050 AT2G33060 AT2G33080 AT3G24900 AT3G24900 AT3G24982 AT3G25010 AT3G25010 AT3G25020 AT4G13810 AT4G13810 AT4G13810 AT4G13820 AT4G13880 AT4G13920 AT5G40170
fragaria_vesca FvH4_2g05950 FvH4_3g24110 FvH4_5g04000 FvH4_6g04890 FvH4_6g31760 FvH4_6g40760 FvH4_6g40800 FvH4_6g40820 FvH4_6g40840 FvH4_6g40842 FvH4_6g40843 FvH4_6g40847 FvH4_7g06093 FvH4_7g10111 FvH4_7g10112 FvH4_7g10113 FvH4_7g10114 FvH4_7g10130 FvH4_7g10150 FvH4_7g31280
malus_domestica MD00G1164200.v1.1 MD00G1164300.v1.1 MD01G1109000.v1.1 MD01G1109100.v1.1 MD07G1068900.v1.1 MD07G1069000.v1.1 MD07G1069300.v1.1 MD07G1069600.v1.1 MD07G1106700.v1.1 MD07G1106900.v1.1 MD07G1107200.v1.1 MD07G1107300.v1.1 MD07G1107400.v1.1 MD07G1107800.v1.1 MD09G1124300.v1.1 MD09G1124700.v1.1 MD09G1124800.v1.1 MD09G1124900.v1.1 MD09G1125100.v1.1 MD09G1125300.v1.1 MD09G1125400.v1.1 MD09G1125500.v1.1 MD09G1125600.v1.1 MD09G1130600.v1.1 MD09G1130900.v1.1 MD09G1131100.v1.1 MD17G1115000.v1.1 MD17G1115100.v1.1 MD17G1115300.v1.1 MD17G1115500.v1.1
prunus_persica Prupe.2G128400_v2.0.a1 Prupe.2G128600_v2.0.a1 Prupe.2G128700_v2.0.a1 Prupe.2G130100_v2.0.a1 Prupe.2G130300_v2.0.a1 Prupe.2G130400_v2.0.a1 Prupe.2G130500_v2.0.a1 Prupe.2G130600_v2.0.a1 Prupe.2G130700_v2.0.a1 Prupe.2G130900_v2.0.a1 Prupe.2G131000_v2.0.a1 Prupe.3G094800_v2.0.a1 Prupe.3G094900_v2.0.a1 Prupe.3G195900_v2.0.a1 Prupe.3G196000_v2.0.a1 Prupe.3G196000_v2.0.a1 Prupe.3G199200_v2.0.a1 Prupe.3G199200_v2.0.a1 Prupe.3G199400_v2.0.a1 Prupe.3G199500_v2.0.a1 Prupe.3G199900_v2.0.a1 Prupe.3G200000_v2.0.a1 Prupe.4G168900_v2.0.a1 Prupe.4G232400_v2.0.a1 Prupe.4G233100_v2.0.a1 Prupe.4G233100_v2.0.a1 Prupe.4G233200_v2.0.a1 Prupe.4G233600_v2.0.a1 Prupe.4G234000_v2.0.a1 Prupe.4G234200_v2.0.a1 Prupe.4G279000_v2.0.a1 Prupe.4G279000_v2.0.a1
pyrus_communis pycom01g13640 pycom05g05290 pycom05g05300 pycom05g05310 pycom05g05320 pycom07g05310 pycom07g05920 pycom07g09130 pycom07g09160 pycom07g09190 pycom07g09210 pycom09g04810 pycom09g04820 pycom09g04850 pycom09g04860 pycom09g04870 pycom09g04930 pycom09g04940 pycom09g04960 pycom09g04980 pycom11g17040 pycom11g17080 pycom11g17100 pycom17g10620 pycom17g10640 pycom17g10650 pycom17g10660
rosa_chinensis RchiOBHm_Chr1g0340311 RchiOBHm_Chr1g0340341 RchiOBHm_Chr1g0340351 RchiOBHm_Chr1g0340361 RchiOBHm_Chr1g0340411 RchiOBHm_Chr1g0340481 RchiOBHm_Chr1g0340521 RchiOBHm_Chr1g0340591 RchiOBHm_Chr1g0340631 RchiOBHm_Chr1g0340681 RchiOBHm_Chr1g0344431 RchiOBHm_Chr1g0346361 RchiOBHm_Chr1g0347011 RchiOBHm_Chr1g0347021 RchiOBHm_Chr1g0347031 RchiOBHm_Chr1g0347041 RchiOBHm_Chr1g0347561 RchiOBHm_Chr1g0347571 RchiOBHm_Chr1g0347811 RchiOBHm_Chr1g0347841 RchiOBHm_Chr1g0347861 RchiOBHm_Chr1g0348951 RchiOBHm_Chr1g0357511 RchiOBHm_Chr1g0367531 RchiOBHm_Chr1g0368411 RchiOBHm_Chr2g0154781 RchiOBHm_Chr2g0154841 RchiOBHm_Chr2g0155021 RchiOBHm_Chr2g0155091 RchiOBHm_Chr2g0155101 RchiOBHm_Chr2g0156211 RchiOBHm_Chr2g0156251 RchiOBHm_Chr2g0156281 RchiOBHm_Chr2g0156371 RchiOBHm_Chr2g0156381 RchiOBHm_Chr2g0156411 RchiOBHm_Chr2g0173751 RchiOBHm_Chr3g0494931 RchiOBHm_Chr4g0385161 RchiOBHm_Chr4g0385171 RchiOBHm_Chr4g0408231 RchiOBHm_Chr4g0408241 RchiOBHm_Chr5g0005251 RchiOBHm_Chr5g0030911 RchiOBHm_Chr5g0042831 RchiOBHm_Chr5g0042871 RchiOBHm_Chr5g0042881 RchiOBHm_Chr5g0043081 RchiOBHm_Chr5g0043131 RchiOBHm_Chr5g0043361 RchiOBHm_Chr5g0043371 RchiOBHm_Chr5g0043381 RchiOBHm_Chr5g0083391 RchiOBHm_Chr5g0083401 RchiOBHm_Chr5g0083441 RchiOBHm_Chr5g0083451 RchiOBHm_Chr5g0083461 RchiOBHm_Chr5g0083471 RchiOBHm_Chr5g0083501 RchiOBHm_Chr5g0083531 RchiOBHm_Chr5g0083601 RchiOBHm_Chr5g0083611 RchiOBHm_Chr5g0083651 RchiOBHm_Chr6g0257441 RchiOBHm_Chr6g0257601 RchiOBHm_Chr6g0257621 RchiOBHm_Chr6g0257631 RchiOBHm_Chr6g0263371 RchiOBHm_Chr6g0263391 RchiOBHm_Chr6g0263401 RchiOBHm_Chr6g0263411
rosa_laevigata RLG00000003361 RLG00000008615 RLG00000010252 RLG00000014349 RLG00000014351 RLG00000014359 RLG00000014696 RLG00000014706 RLG00000014711 RLG00000014712 RLG00000018865 RLG00000020803 RLG00000020804 RLG00000020808 RLG00000020811 RLG00000020812 RLG00000020816 RLG00000020817 RLG00000020818 RLG00000020896 RLG00000020902 RLG00000020904 RLG00000020905 RLG00000020906 RLG00000020907 RLG00000020908 RLG00000020909 RLG00000020910 RLG00000022216 RLG00000022218 RLG00000027211 RLG00000027212 RLG00000027213 RLG00000027214 RLG00000028474 RLG00000028475 RLG00000028613 RLG00000028708 RLG00000028709 RLG00000028737 RLG00000028738 RLG00000028764 RLG00000029010 RLG00000029012 RLG00000029019 RLG00000029022 RLG00000029025 RLG00000029027 RLG00000029031 RLG00000029035 RLG00000029141 RLG00000030130 RLG00000033005 RLG00000033271 RLG00000034150 RLG00000034153 RLG00000034158 RLG00000034160 RLG00000034164 RLG00000034166 RLG00000034167 RLG00000034183 RLG00000037034 RLG00000037035
rosa_multiflora Rmu_co8046282.1_g000001 Rmu_co8137732.1_g000001 Rmu_co8267491.1_g000001 Rmu_co8329695.1_g000001 Rmu_co8330005.1_g000001 Rmu_co8351095.1_g000001 Rmu_co8357797.1_g000001 Rmu_co8424479.1_g000001 Rmu_co8425575.1_g000001 Rmu_co8485497.1_g000001 Rmu_sc0000060.1_g000020 Rmu_sc0000260.1_g000009 Rmu_sc0000565.1_g000006 Rmu_sc0000566.1_g000023 Rmu_sc0000566.1_g000025 Rmu_sc0000566.1_g000031 Rmu_sc0000566.1_g000033 Rmu_sc0000566.1_g000036 Rmu_sc0000566.1_g000045 Rmu_sc0000566.1_g000048 Rmu_sc0000698.1_g000009 Rmu_sc0000698.1_g000031 Rmu_sc0000820.1_g000049 Rmu_sc0001099.1_g000008 Rmu_sc0001167.1_g000009 Rmu_sc0001167.1_g000070 Rmu_sc0001205.1_g000014 Rmu_sc0001444.1_g000008 Rmu_sc0001836.1_g000017 Rmu_sc0001836.1_g000021 Rmu_sc0001836.1_g000065 Rmu_sc0001974.1_g000014 Rmu_sc0002048.1_g000006 Rmu_sc0002048.1_g000018 Rmu_sc0002048.1_g000034 Rmu_sc0002079.1_g000008 Rmu_sc0002079.1_g000012 Rmu_sc0002079.1_g000034 Rmu_sc0002161.1_g000018 Rmu_sc0002245.1_g000018 Rmu_sc0002245.1_g000040 Rmu_sc0002538.1_g000004 Rmu_sc0002595.1_g000003 Rmu_sc0002595.1_g000004 Rmu_sc0002709.1_g000027 Rmu_sc0002709.1_g000043 Rmu_sc0003086.1_g000004 Rmu_sc0003188.1_g000002 Rmu_sc0003188.1_g000003 Rmu_sc0003301.1_g000003 Rmu_sc0003522.1_g000040 Rmu_sc0003785.1_g000004 Rmu_sc0003918.1_g000002 Rmu_sc0003918.1_g000015 Rmu_sc0004325.1_g000017 Rmu_sc0004355.1_g000007 Rmu_sc0004976.1_g000006 Rmu_sc0004976.1_g000010 Rmu_sc0004976.1_g000024 Rmu_sc0005144.1_g000016 Rmu_sc0005167.1_g000002 Rmu_sc0005451.1_g000002 Rmu_sc0006217.1_g000004 Rmu_sc0006908.1_g000027 Rmu_sc0008148.1_g000016 Rmu_sc0008148.1_g000044 Rmu_sc0008148.1_g000047 Rmu_sc0008734.1_g000012 Rmu_sc0008734.1_g000017 Rmu_sc0010137.1_g000014 Rmu_sc0010308.1_g000003 Rmu_sc0010719.1_g000001 Rmu_sc0014922.1_g000001 Rmu_sc0020148.1_g000001 Rmu_sc0024761.1_g000002 Rmu_sc0024761.1_g000003 Rmu_sc0027638.1_g000002 Rmu_sc0030439.1_g000001 Rmu_sc0033559.1_g000001 Rmu_sc0036789.1_g000001 Rmu_ssc0000173.1_g000015 Rmu_ssc0000245.1_g000025 Rmu_ssc0000342.1_g000001
rosa_roxburghii Rroxscaffold_1G00000980 Rroxscaffold_1G00000990 Rroxscaffold_1G00001050 Rroxscaffold_1G00001070 Rroxscaffold_1G00037490 Rroxscaffold_1G00037600 Rroxscaffold_1G00037640 Rroxscaffold_1G00037680 Rroxscaffold_1G00037700 Rroxscaffold_1G00037720 Rroxscaffold_1G00037780 Rroxscaffold_1G00037810 Rroxscaffold_2G00078660 Rroxscaffold_2G00093050 Rroxscaffold_2G00093070 Rroxscaffold_2G00093120 Rroxscaffold_2G00093140 Rroxscaffold_2G00093950 Rroxscaffold_2G00093980 Rroxscaffold_2G00093990 Rroxscaffold_2G00094050 Rroxscaffold_2G00094080 Rroxscaffold_2G00125300 Rroxscaffold_3G00218210 Rroxscaffold_4G00288530 Rroxscaffold_4G00288580 Rroxscaffold_4G00306260 Rroxscaffold_4G00306350 Rroxscaffold_4G00306420 Rroxscaffold_4G00307420 Rroxscaffold_4G00307660 Rroxscaffold_4G00307690 Rroxscaffold_4G00307720 Rroxscaffold_4G00311180 Rroxscaffold_4G00311220 Rroxscaffold_4G00311240 Rroxscaffold_4G00315940 Rroxscaffold_4G00315950 Rroxscaffold_5G00333080 Rroxscaffold_7G00208670 Rroxscaffold_7G00208690 Rroxscaffold_7G00208700 Rroxscaffold_7G00208710 Rroxscaffold_7G00208830 Rroxscaffold_7G00208840 Rroxscaffold_7G00208860
rosa_rugosa Rorug01G0052800 Rorug01G0052900 Rorug01G0084800 Rorug01G0162300.1 Rorug01G0162600.1 Rorug01G0162700.1 Rorug01G0163100.1 Rorug01G0163300.1 Rorug01G0163800.1 Rorug01G0163900.1 Rorug01G0164200.1 Rorug01G0164400.1 Rorug01G0187700 Rorug01G0187800 Rorug01G0189400 Rorug01G0189500 Rorug01G0189600 Rorug01G0189800 Rorug01G0190200 Rorug01G0190300 Rorug01G0198800 Rorug01G0341700 Rorug02G0445100 Rorug02G0445300 Rorug02G0445400 Rorug02G0452600 Rorug02G0452700 Rorug02G0452800 Rorug02G0453000 Rorug02G0522500 Rorug02G0572500 Rorug05G0203900 Rorug05G0204100 Rorug05G0204200 Rorug05G0204400 Rorug05G0205500 Rorug05G0205600 Rorug05G0484800 Rorug05G0484800 Rorug05G0484900 Rorug05G0570000 Rorug05G0570100 Rorug05G0570200 Rorug05G0570300.1 Rorug05G0570800 Rorug05G0570900 Rorug05G0572200 Rorug05G0572500
rosa_samantha Rh1AG178100 Rh1AG178500 Rh1AG178800 Rh1AG206800 Rh1AG207200 Rh1AG207700 Rh1AG348900 Rh2AG316000 Rh2BG522100 Rh2BG522400 Rh2BG530500 Rh2BG531000 Rh3AG317700 Rh4CG003500 Rh5AG289600 Rh5BG293800 Rh5BG294000 Rh5BG295500 Rh5BG296000 Rh5BG296300 Rh5BG297800 Rh5DG303900 Rh5DG305200 Rh5DG305500 Rh6AG126500
rosa_wichuraiana Rw0G002430 Rw0G013640 Rw1G014810 Rw1G014830 Rw1G014860 Rw1G014870 Rw1G014910 Rw1G017200 Rw1G017210 Rw1G017300 Rw1G017610 Rw1G017670 Rw1G017710 Rw1G017730 Rw1G018330 Rw1G018440 Rw1G031010 Rw1G031040 Rw1G031060 Rw2G042020 Rw2G042760 Rw2G042790 Rw2G042800 Rw2G053460 Rw2G053470 Rw4G000600 Rw5G019620 Rw5G027010 Rw5G049870 Rw5G050460 Rw5G050530 Rw6G007730 Rw6G007740 Rw6G007770 Rw6G007860 Rw6G010660 Rw6G010800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2933
AatII GACGTC 1 cut(s) 2931
Acc16I TGCGCA 1 cut(s) 2231
Acc65I GGTACC 1 cut(s) 2309
AccB1I GGYRCC 2 cut(s) 978, 2309
AccB7I CCANNNNNTGG 1 cut(s) 2378
AccBSI CCGCTC 2 cut(s) 1377, 1722
AccII CGCG 1 cut(s) 2949
AccIII TCCGGA 1 cut(s) 857
AciI CCGC 5 cut(s) 1377, 1722, 1907, 1982, 2382
AclWI GGATC 8 cut(s) 537, 1593, 1746, 1771, 2557, 2629, 2771, 2896
AcoI YGGCCR 1 cut(s) 1609
AcuI CTGAAG 4 cut(s) 356, 593, 1883, 1909
AcyI GRCGYC 1 cut(s) 2928
AdeI CACNNNGTG 1 cut(s) 2185
AfaI GTAC 7 cut(s) 666, 1617, 1748, 1770, 1796, 1868, 2311
AfiI CCNNNNNNNGG 4 cut(s) 130, 864, 2378, 2517
AflII CTTAAG 1 cut(s) 2960
AflIII ACRYGT 1 cut(s) 1395
AhlI ACTAGT 3 cut(s) 26, 617, 830
AjnI CCWGG 2 cut(s) 981, 2760
AjuI GAANNNNNNNTTGG 2 cut(s) 1231, 1263
Alw26I GTCTC 5 cut(s) 326, 870, 1460, 1919, 2686
AlwI GGATC 8 cut(s) 537, 1593, 1746, 1771, 2557, 2629, 2771, 2896
AlwNI CAGNNNCTG 3 cut(s) 236, 379, 2891
Ama87I CYCGRG 2 cut(s) 1343, 1916
Aor13HI TCCGGA 1 cut(s) 857
AoxI GGCC 4 cut(s) 1235, 1609, 1723, 1972
ApeKI GCWGC 7 cut(s) 103, 106, 233, 236, 249, 1408, 2453
ArsI GACNNNNNNTTYG 2 cut(s) 203, 235
Asp700I GAANNNNTTC 3 cut(s) 630, 2174, 2423
Asp718I GGTACC 1 cut(s) 2309
AspLEI GCGC 2 cut(s) 2232, 2949
AspS9I GGNCC 5 cut(s) 1235, 2369, 2508, 2605, 2702
AsuC2I CCSGG 2 cut(s) 740, 2141
AsuHPI GGTGA 6 cut(s) 206, 572, 640, 754, 1773, 1827
AsuII TTCGAA 1 cut(s) 41
AsuNHI GCTAGC 1 cut(s) 1270
AvaI CYCGRG 2 cut(s) 1343, 1916
AvaII GGWCC 4 cut(s) 2369, 2508, 2605, 2702
BanI GGYRCC 2 cut(s) 978, 2309
BarI GAAGNNNNNNTAC 2 cut(s) 2378, 2410
BauI CACGAG 1 cut(s) 1993
BbsI GAAGAC 2 cut(s) 287, 1167
BbvI GCAGC 7 cut(s) 115, 118, 220, 223, 236, 1395, 2465
BceAI ACGGC 1 cut(s) 1624
BciT130I CCWGG 2 cut(s) 983, 2762
BclI TGATCA 1 cut(s) 2212
BcnI CCSGG 2 cut(s) 740, 2141
BcoDI GTCTC 5 cut(s) 326, 870, 1460, 1919, 2686
BcuI ACTAGT 3 cut(s) 26, 617, 830
BfmI CTRYAG 1 cut(s) 101
BfrI CTTAAG 1 cut(s) 2960
BglII AGATCT 2 cut(s) 796, 1282
BisI GCNGC 8 cut(s) 104, 107, 234, 237, 250, 1409, 1723, 2454
BlsI GCNGC 8 cut(s) 105, 108, 235, 238, 251, 1410, 1724, 2455
BmcAI AGTACT 2 cut(s) 1770, 1796
Bme1390I CCNGG 4 cut(s) 740, 983, 2141, 2762
Bme18I GGWCC 4 cut(s) 2369, 2508, 2605, 2702
BmeT110I CYCGRG 2 cut(s) 1343, 1916
BmgT120I GGNCC 5 cut(s) 1235, 2369, 2508, 2605, 2702
BmiI GGNNCC 6 cut(s) 980, 2311, 2493, 2509, 2510, 2719
BmrFI CCNGG 4 cut(s) 740, 983, 2141, 2762
BmrI ACTGGG 2 cut(s) 1242, 2716
BmsI GCATC 7 cut(s) 236, 923, 1338, 1890, 2061, 2173, 2964
BmtI GCTAGC 1 cut(s) 1274
BmuI ACTGGG 2 cut(s) 1242, 2716
BpiI GAAGAC 2 cut(s) 287, 1167
BplI GAGNNNNNCTC 2 cut(s) 39, 71
BpmI CTGGAG 4 cut(s) 134, 523, 1686, 2060
Bpu14I TTCGAA 1 cut(s) 41
BpuEI CTTGAG 2 cut(s) 2243, 2452
BpuMI CCSGG 2 cut(s) 740, 2141
BsaBI GATNNNNATC 2 cut(s) 2319, 2978
BsaHI GRCGYC 1 cut(s) 2928
BsaI GGTCTC 1 cut(s) 870
BsaJI CCNNGG 4 cut(s) 2048, 2179, 2574, 2761
BsaWI WCCGGW 2 cut(s) 667, 857
BsaXI ACNNNNNCTCC 2 cut(s) 544, 574
Bsc4I CCNNNNNNNGG 4 cut(s) 130, 864, 2378, 2517
Bse3DI GCAATG 3 cut(s) 675, 2166, 2806
Bse8I GATNNNNATC 2 cut(s) 2319, 2978
BseAI TCCGGA 1 cut(s) 857
BseBI CCWGG 2 cut(s) 983, 2762
BseDI CCNNGG 4 cut(s) 2048, 2179, 2574, 2761
BseJI GATNNNNATC 2 cut(s) 2319, 2978
BseLI CCNNNNNNNGG 4 cut(s) 130, 864, 2378, 2517
BseMI GCAATG 3 cut(s) 675, 2166, 2806
BseRI GAGGAG 3 cut(s) 146, 695, 2799
BseXI GCAGC 7 cut(s) 115, 118, 220, 223, 236, 1395, 2465
BseYI CCCAGC 1 cut(s) 1122
BsgI GTGCAG 1 cut(s) 642
Bsh1236I CGCG 1 cut(s) 2949
BshFI GGCC 4 cut(s) 1237, 1611, 1725, 1974
BshNI GGYRCC 2 cut(s) 978, 2309
BsiHKCI CYCGRG 2 cut(s) 1343, 1916
BsiSI CCGG 5 cut(s) 327, 668, 740, 858, 2141
BslFI GGGAC 3 cut(s) 272, 2146, 2521
BslI CCNNNNNNNGG 4 cut(s) 130, 864, 2378, 2517
BsmAI GTCTC 5 cut(s) 326, 870, 1460, 1919, 2686
BsmFI GGGAC 3 cut(s) 272, 2146, 2521
BsmI GAATGC 4 cut(s) 1486, 1608, 2176, 2232
BsnI GGCC 4 cut(s) 1237, 1611, 1725, 1974
Bso31I GGTCTC 1 cut(s) 870
BsoBI CYCGRG 2 cut(s) 1343, 1916
Bsp119I TTCGAA 1 cut(s) 41
Bsp13I TCCGGA 1 cut(s) 857
BspACI CCGC 5 cut(s) 1377, 1722, 1907, 1982, 2382
BspANI GGCC 4 cut(s) 1237, 1611, 1725, 1974
BspEI TCCGGA 1 cut(s) 857
BspFNI CGCG 1 cut(s) 2949
BspHI TCATGA 1 cut(s) 1659
BspLI GGNNCC 6 cut(s) 980, 2311, 2493, 2509, 2510, 2719
BspMAI CTGCAG 1 cut(s) 105
BspOI GCTAGC 1 cut(s) 1274
BspPI GGATC 8 cut(s) 537, 1593, 1746, 1771, 2557, 2629, 2771, 2896
BspT104I TTCGAA 1 cut(s) 41
BspT107I GGYRCC 2 cut(s) 978, 2309
BspTI CTTAAG 1 cut(s) 2960
BspTNI GGTCTC 1 cut(s) 870
BsrBI CCGCTC 2 cut(s) 1377, 1722
BsrDI GCAATG 3 cut(s) 675, 2166, 2806
BssECI CCNNGG 4 cut(s) 2048, 2179, 2574, 2761
BssNI GRCGYC 1 cut(s) 2928
BssSI CACGAG 1 cut(s) 1993
BssT1I CCWWGG 2 cut(s) 2048, 2574
Bst2BI CACGAG 1 cut(s) 1993
Bst2UI CCWGG 2 cut(s) 983, 2762
Bst4CI ACNGT 5 cut(s) 560, 805, 1056, 1307, 2183
Bst6I CTCTTC 4 cut(s) 62, 359, 1252, 1458
BstACI GRCGYC 1 cut(s) 2928
BstAFI CTTAAG 1 cut(s) 2960
BstBI TTCGAA 1 cut(s) 41
BstC8I GCNNGC 3 cut(s) 35, 1268, 1272
BstDSI CCRYGG 1 cut(s) 2179
BstFNI CGCG 1 cut(s) 2949
BstHHI GCGC 2 cut(s) 2232, 2949
BstMAI GTCTC 5 cut(s) 326, 870, 1460, 1919, 2686
BstMWI GCNNNNNNNGC 3 cut(s) 336, 2388, 2527
BstNI CCWGG 2 cut(s) 983, 2762
BstNSI RCATGY 2 cut(s) 37, 1399
BstSCI CCNGG 4 cut(s) 738, 981, 2139, 2760
BstSFI CTRYAG 1 cut(s) 101
BstUI CGCG 1 cut(s) 2949
BstV1I GCAGC 7 cut(s) 115, 118, 220, 223, 236, 1395, 2465
BstV2I GAAGAC 2 cut(s) 287, 1167
BstX2I RGATCY 8 cut(s) 529, 796, 1282, 1585, 1738, 2634, 2776, 2888
BstYI RGATCY 8 cut(s) 529, 796, 1282, 1585, 1738, 2634, 2776, 2888
BsuRI GGCC 4 cut(s) 1237, 1611, 1725, 1974
BtgI CCRYGG 1 cut(s) 2179
BtgZI GCGATG 1 cut(s) 1591
BtsI GCAGTG 2 cut(s) 1916, 2780
Cac8I GCNNGC 3 cut(s) 35, 1268, 1272
CaiI CAGNNNCTG 3 cut(s) 236, 379, 2891
CciI TCATGA 1 cut(s) 1659
CfoI GCGC 2 cut(s) 2232, 2949
Cfr13I GGNCC 5 cut(s) 1235, 2369, 2508, 2605, 2702
CsiI ACCWGGT 1 cut(s) 981
Csp6I GTAC 7 cut(s) 665, 1616, 1747, 1769, 1795, 1867, 2310
CspCI CAANNNNNGTGG 4 cut(s) 1876, 1911, 2680, 2715
CviQI GTAC 7 cut(s) 665, 1616, 1747, 1769, 1795, 1867, 2310
DraI TTTAAA 1 cut(s) 768
DraIII CACNNNGTG 1 cut(s) 2185
DrdI GACNNNNNNGTC 1 cut(s) 2933
DseDI GACNNNNNNGTC 1 cut(s) 2933
EaeI YGGCCR 1 cut(s) 1609
Eam1104I CTCTTC 4 cut(s) 62, 359, 1252, 1458
EarI CTCTTC 4 cut(s) 62, 359, 1252, 1458
Eco130I CCWWGG 2 cut(s) 2048, 2574
Eco31I GGTCTC 1 cut(s) 870
Eco32I GATATC 1 cut(s) 1562
Eco47I GGWCC 4 cut(s) 2369, 2508, 2605, 2702
Eco57I CTGAAG 4 cut(s) 356, 593, 1883, 1909
Eco88I CYCGRG 2 cut(s) 1343, 1916
EcoO109I RGGNCCY 1 cut(s) 2508
EcoRI GAATTC 3 cut(s) 734, 2102, 2498
EcoRII CCWGG 2 cut(s) 981, 2760
EcoRV GATATC 1 cut(s) 1562
EcoT14I CCWWGG 2 cut(s) 2048, 2574
EcoT22I ATGCAT 1 cut(s) 2166
ErhI CCWWGG 2 cut(s) 2048, 2574
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FaqI GGGAC 3 cut(s) 272, 2146, 2521
FauI CCCGC 2 cut(s) 1989, 2375
FauNDI CATATG 2 cut(s) 2374, 2749
FbaI TGATCA 1 cut(s) 2212
Fnu4HI GCNGC 8 cut(s) 104, 107, 234, 237, 250, 1409, 1723, 2454
Fsp4HI GCNGC 8 cut(s) 104, 107, 234, 237, 250, 1409, 1723, 2454
FspI TGCGCA 1 cut(s) 2231
GlaI GCGC 2 cut(s) 2231, 2948
GluI GCNGC 8 cut(s) 104, 107, 234, 237, 250, 1409, 1723, 2454
GsaI CCCAGC 1 cut(s) 1126
GsuI CTGGAG 4 cut(s) 134, 523, 1686, 2060
HaeIII GGCC 4 cut(s) 1237, 1611, 1725, 1974
HapII CCGG 5 cut(s) 327, 668, 740, 858, 2141
HhaI GCGC 2 cut(s) 2232, 2949
Hin1I GRCGYC 1 cut(s) 2928
Hin6I GCGC 2 cut(s) 2230, 2947
HinP1I GCGC 2 cut(s) 2230, 2947
HindIII AAGCTT 3 cut(s) 163, 629, 899
HpaII CCGG 5 cut(s) 327, 668, 740, 858, 2141
HphI GGTGA 6 cut(s) 206, 572, 640, 754, 1773, 1827
Hpy166II GTNNAC 3 cut(s) 24, 1826, 2419
Hpy8I GTNNAC 3 cut(s) 24, 1826, 2419
HpyAV CCTTC 8 cut(s) 591, 894, 1788, 1964, 2404, 2477, 2747, 2832
HpyCH4III ACNGT 5 cut(s) 560, 805, 1056, 1307, 2183
HpyCH4IV ACGT 1 cut(s) 2928
HpyF10VI GCNNNNNNNGC 3 cut(s) 336, 2388, 2527
HpySE526I ACGT 1 cut(s) 2928
Hsp92I GRCGYC 1 cut(s) 2928
HspAI GCGC 2 cut(s) 2230, 2947
KflI GGGWCCC 1 cut(s) 2508
Kpn2I TCCGGA 1 cut(s) 857
KpnI GGTACC 1 cut(s) 2313
Ksp22I TGATCA 1 cut(s) 2212
LmnI GCTCC 8 cut(s) 153, 344, 450, 647, 1719, 2079, 2396, 2812
Lsp1109I GCAGC 7 cut(s) 115, 118, 220, 223, 236, 1395, 2465
LweI GCATC 7 cut(s) 236, 923, 1338, 1890, 2061, 2173, 2964
MabI ACCWGGT 1 cut(s) 981
MaeII ACGT 1 cut(s) 2928
MaeIII GTNAC 8 cut(s) 554, 646, 843, 1056, 1065, 1091, 1163, 2935
MbiI CCGCTC 2 cut(s) 1377, 1722
MfeI CAATTG 1 cut(s) 891
MflI RGATCY 8 cut(s) 529, 796, 1282, 1585, 1738, 2634, 2776, 2888
MlyI GAGTC 2 cut(s) 1328, 2128
MmeI TCCRAC 5 cut(s) 366, 1716, 2565, 2583, 2890
Mph1103I ATGCAT 1 cut(s) 2166
MroI TCCGGA 1 cut(s) 857
MroXI GAANNNNTTC 3 cut(s) 630, 2174, 2423
MseI TTAA 9 cut(s) 156, 456, 614, 767, 777, 1071, 1229, 2585, 2961
MslI CAYNNNNRTG 1 cut(s) 2169
MspA1I CMGCKG 1 cut(s) 233
MspCI CTTAAG 1 cut(s) 2960
MspI CCGG 5 cut(s) 327, 668, 740, 858, 2141
MspR9I CCNGG 4 cut(s) 740, 983, 2141, 2762
MunI CAATTG 1 cut(s) 891
Mva1269I GAATGC 4 cut(s) 1486, 1608, 2176, 2232
MvaI CCWGG 2 cut(s) 983, 2762
MvnI CGCG 1 cut(s) 2949
MwoI GCNNNNNNNGC 3 cut(s) 336, 2388, 2527
NciI CCSGG 2 cut(s) 740, 2141
NdeI CATATG 2 cut(s) 2374, 2749
NheI GCTAGC 1 cut(s) 1270
NlaIV GGNNCC 6 cut(s) 980, 2311, 2493, 2509, 2510, 2719
NmuCI GTSAC 5 cut(s) 646, 843, 1056, 1065, 2935
NsbI TGCGCA 1 cut(s) 2231
NsiI ATGCAT 1 cut(s) 2166
NspI RCATGY 2 cut(s) 37, 1399
NspV TTCGAA 1 cut(s) 41
PaeI GCATGC 1 cut(s) 37
PaeR7I CTCGAG 1 cut(s) 1343
PagI TCATGA 1 cut(s) 1659
PciI ACATGT 1 cut(s) 1395
PctI GAATGC 4 cut(s) 1486, 1608, 2176, 2232
PdmI GAANNNNTTC 3 cut(s) 630, 2174, 2423
PflFI GACNNNGTC 1 cut(s) 263
PflMI CCANNNNNTGG 1 cut(s) 2378
PfoI TCCNGGA 1 cut(s) 2139
PkrI GCNGC 8 cut(s) 105, 108, 235, 238, 251, 1410, 1724, 2455
PleI GAGTC 2 cut(s) 1327, 2128
PpsI GAGTC 2 cut(s) 1327, 2128
PpuMI RGGWCCY 1 cut(s) 2508
PscI ACATGT 1 cut(s) 1395
Psp5II RGGWCCY 1 cut(s) 2508
Psp6I CCWGG 2 cut(s) 981, 2760
PspFI CCCAGC 1 cut(s) 1122
PspGI CCWGG 2 cut(s) 981, 2760
PspN4I GGNNCC 6 cut(s) 980, 2311, 2493, 2509, 2510, 2719
PspPI GGNCC 5 cut(s) 1235, 2369, 2508, 2605, 2702
PspPPI RGGWCCY 1 cut(s) 2508
PstI CTGCAG 1 cut(s) 105
PstNI CAGNNNCTG 3 cut(s) 236, 379, 2891
PsuI RGATCY 8 cut(s) 529, 796, 1282, 1585, 1738, 2634, 2776, 2888
PsyI GACNNNGTC 1 cut(s) 263
PvuII CAGCTG 1 cut(s) 233
RsaI GTAC 7 cut(s) 666, 1617, 1748, 1770, 1796, 1868, 2311
RsaNI GTAC 7 cut(s) 665, 1616, 1747, 1769, 1795, 1867, 2310
RseI CAYNNNNRTG 1 cut(s) 2169
SaqAI TTAA 9 cut(s) 156, 456, 614, 767, 777, 1071, 1229, 2585, 2961
SatI GCNGC 8 cut(s) 104, 107, 234, 237, 250, 1409, 1723, 2454
Sau96I GGNCC 5 cut(s) 1235, 2369, 2508, 2605, 2702
ScaI AGTACT 2 cut(s) 1770, 1796
SchI GAGTC 2 cut(s) 1328, 2128
ScrFI CCNGG 4 cut(s) 740, 983, 2141, 2762
SexAI ACCWGGT 1 cut(s) 981
SfaNI GCATC 7 cut(s) 236, 923, 1338, 1890, 2061, 2173, 2964
SfcI CTRYAG 1 cut(s) 101
Sfr274I CTCGAG 1 cut(s) 1343
SfuI TTCGAA 1 cut(s) 41
SinI GGWCC 4 cut(s) 2369, 2508, 2605, 2702
SlaI CTCGAG 1 cut(s) 1343
SmiMI CAYNNNNRTG 1 cut(s) 2169
SmlI CTYRAG 4 cut(s) 1343, 2222, 2467, 2960
SmoI CTYRAG 4 cut(s) 1343, 2222, 2467, 2960
SpeI ACTAGT 3 cut(s) 26, 617, 830
SphI GCATGC 1 cut(s) 37
SsiI CCGC 5 cut(s) 1377, 1722, 1907, 1982, 2382
StyD4I CCNGG 4 cut(s) 738, 981, 2139, 2760
StyI CCWWGG 2 cut(s) 2048, 2574
TaaI ACNGT 5 cut(s) 560, 805, 1056, 1307, 2183
TaiI ACGT 1 cut(s) 2931
TaqI TCGA 7 cut(s) 41, 267, 1337, 1344, 1461, 1791, 2812
TatI WGTACW 2 cut(s) 1768, 1794
TauI GCSGC 1 cut(s) 1725
Tru1I TTAA 9 cut(s) 156, 456, 614, 767, 777, 1071, 1229, 2585, 2961
Tru9I TTAA 9 cut(s) 156, 456, 614, 767, 777, 1071, 1229, 2585, 2961
TseFI GTSAC 5 cut(s) 646, 843, 1056, 1065, 2935
TseI GCWGC 7 cut(s) 103, 106, 233, 236, 249, 1408, 2453
Tsp45I GTSAC 5 cut(s) 646, 843, 1056, 1065, 2935
TspGWI ACGGA 2 cut(s) 437, 634
Tth111I GACNNNGTC 1 cut(s) 263
Van91I CCANNNNNTGG 1 cut(s) 2378
Vha464I CTTAAG 1 cut(s) 2960
VpaK11BI GGWCC 4 cut(s) 2369, 2508, 2605, 2702
XbaI TCTAGA 3 cut(s) 622, 1357, 1945
XceI RCATGY 2 cut(s) 37, 1399
XhoI CTCGAG 1 cut(s) 1343
XmnI GAANNNNTTC 3 cut(s) 630, 2174, 2423
ZraI GACGTC 1 cut(s) 2929
ZrmI AGTACT 2 cut(s) 1770, 1796
Zsp2I ATGCAT 1 cut(s) 2166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.