regulation of response to stimulus
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 1453 |
| AccI | GTMKAC | 1 cut(s) | 395 |
| AccII | CGCG | 1 cut(s) | 224 |
| AccIII | TCCGGA | 1 cut(s) | 1611 |
| AciI | CCGC | 6 cut(s) | 224, 453, 502, 788, 1451, 1894 |
| AclWI | GGATC | 1 cut(s) | 1409 |
| AcoI | YGGCCR | 1 cut(s) | 2238 |
| AfaI | GTAC | 3 cut(s) | 755, 795, 1398 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 98, 195, 1131, 1868 |
| AflII | CTTAAG | 2 cut(s) | 1793, 2246 |
| AflIII | ACRYGT | 1 cut(s) | 2340 |
| AgeI | ACCGGT | 1 cut(s) | 1565 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1607, 1639, 2442, 2474 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 547, 579 |
| Alw21I | GWGCWC | 4 cut(s) | 480, 1041, 1328, 1438 |
| Alw26I | GTCTC | 5 cut(s) | 61, 257, 1722, 2174, 2349 |
| AlwI | GGATC | 1 cut(s) | 1409 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 249 |
| Aor13HI | TCCGGA | 1 cut(s) | 1611 |
| AoxI | GGCC | 4 cut(s) | 246, 412, 2218, 2238 |
| ApeKI | GCWGC | 1 cut(s) | 1891 |
| AseI | ATTAAT | 1 cut(s) | 1074 |
| AsiGI | ACCGGT | 1 cut(s) | 1565 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 770, 1085 |
| AspA2I | CCTAGG | 2 cut(s) | 409, 973 |
| AspLEI | GCGC | 1 cut(s) | 224 |
| AspS9I | GGNCC | 7 cut(s) | 116, 246, 1568, 1756, 1847, 2028, 2098 |
| AsuC2I | CCSGG | 1 cut(s) | 92 |
| AsuHPI | GGTGA | 8 cut(s) | 299, 325, 619, 727, 989, 1555, 2032, 2375 |
| AsuII | TTCGAA | 1 cut(s) | 1362 |
| AvaII | GGWCC | 6 cut(s) | 116, 1568, 1756, 1847, 2028, 2098 |
| AvrII | CCTAGG | 2 cut(s) | 409, 973 |
| BalI | TGGCCA | 1 cut(s) | 2240 |
| BanII | GRGCYC | 3 cut(s) | 480, 1041, 1328 |
| BbsI | GAAGAC | 1 cut(s) | 776 |
| Bbv12I | GWGCWC | 4 cut(s) | 480, 1041, 1328, 1438 |
| BbvCI | CCTCAGC | 1 cut(s) | 2110 |
| BbvI | GCAGC | 1 cut(s) | 1878 |
| BccI | CCATC | 2 cut(s) | 860, 1180 |
| BciVI | GTATCC | 1 cut(s) | 1890 |
| BcnI | CCSGG | 1 cut(s) | 92 |
| BcoDI | GTCTC | 5 cut(s) | 61, 257, 1722, 2174, 2349 |
| BfaI | CTAG | 7 cut(s) | 410, 671, 959, 974, 1146, 2264, 2624 |
| BfmI | CTRYAG | 3 cut(s) | 1516, 1739, 2055 |
| BfrI | CTTAAG | 2 cut(s) | 1793, 2246 |
| BfuI | GTATCC | 1 cut(s) | 1890 |
| BisI | GCNGC | 1 cut(s) | 1892 |
| BlnI | CCTAGG | 2 cut(s) | 409, 973 |
| BlpI | GCTNAGC | 1 cut(s) | 1732 |
| BlsI | GCNGC | 1 cut(s) | 1893 |
| Bme1390I | CCNGG | 1 cut(s) | 92 |
| Bme18I | GGWCC | 6 cut(s) | 116, 1568, 1756, 1847, 2028, 2098 |
| BmgT120I | GGNCC | 7 cut(s) | 116, 246, 1568, 1756, 1847, 2028, 2098 |
| BmiI | GGNNCC | 5 cut(s) | 118, 850, 1310, 2029, 2099 |
| BmrFI | CCNGG | 1 cut(s) | 92 |
| BmrI | ACTGGG | 2 cut(s) | 733, 2400 |
| BmsI | GCATC | 2 cut(s) | 1648, 1973 |
| BmuI | ACTGGG | 2 cut(s) | 733, 2400 |
| BpiI | GAAGAC | 1 cut(s) | 776 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 998, 1030, 1300, 1332 |
| Bpu10I | CCTNAGC | 3 cut(s) | 440, 1887, 2110 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1732 |
| Bpu14I | TTCGAA | 1 cut(s) | 1362 |
| BpuEI | CTTGAG | 1 cut(s) | 1922 |
| BpuMI | CCSGG | 1 cut(s) | 92 |
| Bsa29I | ATCGAT | 1 cut(s) | 1693 |
| BsaI | GGTCTC | 2 cut(s) | 1722, 2174 |
| BsaJI | CCNNGG | 6 cut(s) | 60, 216, 409, 973, 1179, 1712 |
| BsaWI | WCCGGW | 4 cut(s) | 1124, 1565, 1611, 2614 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 614, 644 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 98, 195, 1131, 1868 |
| Bse118I | RCCGGY | 1 cut(s) | 1565 |
| Bse1I | ACTGG | 8 cut(s) | 289, 403, 487, 739, 781, 1360, 1930, 2395 |
| Bse3DI | GCAATG | 1 cut(s) | 2598 |
| BseAI | TCCGGA | 1 cut(s) | 1611 |
| BseCI | ATCGAT | 1 cut(s) | 1693 |
| BseDI | CCNNGG | 6 cut(s) | 60, 216, 409, 973, 1179, 1712 |
| BseGI | GGATG | 3 cut(s) | 688, 852, 2485 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 98, 195, 1131, 1868 |
| BseMI | GCAATG | 1 cut(s) | 2598 |
| BseNI | ACTGG | 8 cut(s) | 289, 403, 487, 739, 781, 1360, 1930, 2395 |
| BseRI | GAGGAG | 6 cut(s) | 452, 622, 931, 1081, 1103, 1848 |
| BseXI | GCAGC | 1 cut(s) | 1878 |
| Bsh1236I | CGCG | 1 cut(s) | 224 |
| BshFI | GGCC | 4 cut(s) | 248, 414, 2220, 2240 |
| BshTI | ACCGGT | 1 cut(s) | 1565 |
| BshVI | ATCGAT | 1 cut(s) | 1693 |
| BsiHKAI | GWGCWC | 4 cut(s) | 480, 1041, 1328, 1438 |
| BsiSI | CCGG | 5 cut(s) | 92, 1125, 1566, 1612, 2615 |
| BslFI | GGGAC | 5 cut(s) | 102, 2041, 2305, 2326, 2476 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 98, 195, 1131, 1868 |
| BsmAI | GTCTC | 5 cut(s) | 61, 257, 1722, 2174, 2349 |
| BsmFI | GGGAC | 5 cut(s) | 102, 2041, 2305, 2326, 2476 |
| BsmI | GAATGC | 1 cut(s) | 369 |
| BsnI | GGCC | 4 cut(s) | 248, 414, 2220, 2240 |
| Bso31I | GGTCTC | 2 cut(s) | 1722, 2174 |
| Bsp119I | TTCGAA | 1 cut(s) | 1362 |
| Bsp1286I | GDGCHC | 4 cut(s) | 480, 1041, 1328, 1438 |
| Bsp13I | TCCGGA | 1 cut(s) | 1611 |
| Bsp1407I | TGTACA | 1 cut(s) | 793 |
| Bsp143I | GATC | 7 cut(s) | 607, 1117, 1401, 1543, 1987, 2184, 2253 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1732 |
| BspACI | CCGC | 6 cut(s) | 224, 453, 502, 788, 1451, 1894 |
| BspANI | GGCC | 4 cut(s) | 248, 414, 2220, 2240 |
| BspDI | ATCGAT | 1 cut(s) | 1693 |
| BspEI | TCCGGA | 1 cut(s) | 1611 |
| BspFNI | CGCG | 1 cut(s) | 224 |
| BspHI | TCATGA | 1 cut(s) | 228 |
| BspLI | GGNNCC | 5 cut(s) | 118, 850, 1310, 2029, 2099 |
| BspMAI | CTGCAG | 1 cut(s) | 1520 |
| BspPI | GGATC | 1 cut(s) | 1409 |
| BspT104I | TTCGAA | 1 cut(s) | 1362 |
| BspTI | CTTAAG | 2 cut(s) | 1793, 2246 |
| BspTNI | GGTCTC | 2 cut(s) | 1722, 2174 |
| BsrBI | CCGCTC | 1 cut(s) | 1453 |
| BsrDI | GCAATG | 1 cut(s) | 2598 |
| BsrFI | RCCGGY | 1 cut(s) | 1565 |
| BsrGI | TGTACA | 1 cut(s) | 793 |
| BsrI | ACTGG | 8 cut(s) | 289, 403, 487, 739, 781, 1360, 1930, 2395 |
| BssAI | RCCGGY | 1 cut(s) | 1565 |
| BssECI | CCNNGG | 6 cut(s) | 60, 216, 409, 973, 1179, 1712 |
| BssMI | GATC | 7 cut(s) | 607, 1117, 1401, 1543, 1987, 2184, 2253 |
| BssT1I | CCWWGG | 5 cut(s) | 60, 409, 973, 1179, 1712 |
| Bst4CI | ACNGT | 5 cut(s) | 278, 572, 1671, 1743, 2363 |
| Bst6I | CTCTTC | 9 cut(s) | 290, 346, 640, 872, 1091, 1725, 2448, 2499, 2511 |
| BstAFI | CTTAAG | 2 cut(s) | 1793, 2246 |
| BstAUI | TGTACA | 1 cut(s) | 793 |
| BstBI | TTCGAA | 1 cut(s) | 1362 |
| BstC8I | GCNNGC | 4 cut(s) | 172, 446, 515, 1934 |
| BstDSI | CCRYGG | 1 cut(s) | 216 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1866 |
| BstF5I | GGATG | 3 cut(s) | 688, 852, 2485 |
| BstFNI | CGCG | 1 cut(s) | 224 |
| BstHHI | GCGC | 1 cut(s) | 224 |
| BstKTI | GATC | 7 cut(s) | 610, 1120, 1404, 1546, 1990, 2187, 2256 |
| BstMAI | GTCTC | 5 cut(s) | 61, 257, 1722, 2174, 2349 |
| BstMBI | GATC | 7 cut(s) | 607, 1117, 1401, 1543, 1987, 2184, 2253 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 411, 696, 2186, 2477 |
| BstNSI | RCATGY | 1 cut(s) | 448 |
| BstSCI | CCNGG | 1 cut(s) | 90 |
| BstSFI | CTRYAG | 3 cut(s) | 1516, 1739, 2055 |
| BstUI | CGCG | 1 cut(s) | 224 |
| BstV1I | GCAGC | 1 cut(s) | 1878 |
| BstV2I | GAAGAC | 1 cut(s) | 776 |
| BstX2I | RGATCY | 1 cut(s) | 1401 |
| BstYI | RGATCY | 1 cut(s) | 1401 |
| Bsu15I | ATCGAT | 1 cut(s) | 1693 |
| BsuI | GTATCC | 1 cut(s) | 1890 |
| BsuRI | GGCC | 4 cut(s) | 248, 414, 2220, 2240 |
| BsuTUI | ATCGAT | 1 cut(s) | 1693 |
| BtgI | CCRYGG | 1 cut(s) | 216 |
| BtsCI | GGATG | 3 cut(s) | 688, 852, 2485 |
| BtsI | GCAGTG | 1 cut(s) | 1201 |
| BtsIMutI | CAGTG | 9 cut(s) | 262, 480, 774, 922, 1201, 1219, 1288, 1923, 2180 |
| Cac8I | GCNNGC | 4 cut(s) | 172, 446, 515, 1934 |
| CaiI | CAGNNNCTG | 1 cut(s) | 249 |
| CciI | TCATGA | 1 cut(s) | 228 |
| CfoI | GCGC | 1 cut(s) | 224 |
| Cfr10I | RCCGGY | 1 cut(s) | 1565 |
| Cfr13I | GGNCC | 7 cut(s) | 116, 246, 1568, 1756, 1847, 2028, 2098 |
| ClaI | ATCGAT | 1 cut(s) | 1693 |
| Csp6I | GTAC | 3 cut(s) | 754, 794, 1397 |
| CspAI | ACCGGT | 1 cut(s) | 1565 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 898, 933 |
| CviAII | CATG | 5 cut(s) | 167, 229, 445, 1581, 2335 |
| CviQI | GTAC | 3 cut(s) | 754, 794, 1397 |
| DpnI | GATC | 7 cut(s) | 609, 1119, 1403, 1545, 1989, 2186, 2255 |
| DpnII | GATC | 7 cut(s) | 607, 1117, 1401, 1543, 1987, 2184, 2253 |
| EaeI | YGGCCR | 1 cut(s) | 2238 |
| Eam1104I | CTCTTC | 9 cut(s) | 290, 346, 640, 872, 1091, 1725, 2448, 2499, 2511 |
| EarI | CTCTTC | 9 cut(s) | 290, 346, 640, 872, 1091, 1725, 2448, 2499, 2511 |
| Ecl136II | GAGCTC | 3 cut(s) | 478, 1039, 1326 |
| Eco130I | CCWWGG | 5 cut(s) | 60, 409, 973, 1179, 1712 |
| Eco24I | GRGCYC | 3 cut(s) | 480, 1041, 1328 |
| Eco31I | GGTCTC | 2 cut(s) | 1722, 2174 |
| Eco32I | GATATC | 1 cut(s) | 1137 |
| Eco47I | GGWCC | 6 cut(s) | 116, 1568, 1756, 1847, 2028, 2098 |
| Eco53kI | GAGCTC | 3 cut(s) | 478, 1039, 1326 |
| EcoICRI | GAGCTC | 3 cut(s) | 478, 1039, 1326 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1866 |
| EcoO109I | RGGNCCY | 3 cut(s) | 246, 2028, 2098 |
| EcoRV | GATATC | 1 cut(s) | 1137 |
| EcoT14I | CCWWGG | 5 cut(s) | 60, 409, 973, 1179, 1712 |
| EcoT38I | GRGCYC | 3 cut(s) | 480, 1041, 1328 |
| ErhI | CCWWGG | 5 cut(s) | 60, 409, 973, 1179, 1712 |
| FaeI | CATG | 5 cut(s) | 170, 232, 448, 1584, 2338 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1422, 1454, 1607, 1639 |
| FaqI | GGGAC | 5 cut(s) | 102, 2041, 2305, 2326, 2476 |
| FatI | CATG | 5 cut(s) | 166, 228, 444, 1580, 2334 |
| FblI | GTMKAC | 1 cut(s) | 395 |
| Fnu4HI | GCNGC | 1 cut(s) | 1892 |
| FokI | GGATG | 3 cut(s) | 695, 839, 2472 |
| FriOI | GRGCYC | 3 cut(s) | 480, 1041, 1328 |
| Fsp4HI | GCNGC | 1 cut(s) | 1892 |
| FspBI | CTAG | 7 cut(s) | 410, 671, 959, 974, 1146, 2264, 2624 |
| GlaI | GCGC | 1 cut(s) | 223 |
| GluI | GCNGC | 1 cut(s) | 1892 |
| HaeIII | GGCC | 4 cut(s) | 248, 414, 2220, 2240 |
| HapII | CCGG | 5 cut(s) | 92, 1125, 1566, 1612, 2615 |
| HhaI | GCGC | 1 cut(s) | 224 |
| Hin1II | CATG | 5 cut(s) | 170, 232, 448, 1584, 2338 |
| Hin6I | GCGC | 1 cut(s) | 222 |
| HinP1I | GCGC | 1 cut(s) | 222 |
| HincII | GTYRAC | 2 cut(s) | 744, 1462 |
| HindII | GTYRAC | 2 cut(s) | 744, 1462 |
| HindIII | AAGCTT | 3 cut(s) | 70, 1019, 1706 |
| HinfI | GANTC | 9 cut(s) | 127, 185, 240, 1160, 1606, 1767, 2159, 2258, 2314 |
| HpaI | GTTAAC | 1 cut(s) | 744 |
| HpaII | CCGG | 5 cut(s) | 92, 1125, 1566, 1612, 2615 |
| HphI | GGTGA | 8 cut(s) | 299, 325, 619, 727, 989, 1555, 2032, 2375 |
| Hpy166II | GTNNAC | 6 cut(s) | 396, 744, 1353, 1462, 1756, 2023 |
| Hpy188I | TCNGA | 7 cut(s) | 7, 355, 832, 1245, 1323, 1375, 2640 |
| Hpy8I | GTNNAC | 6 cut(s) | 396, 744, 1353, 1462, 1756, 2023 |
| Hpy99I | CGWCG | 1 cut(s) | 1682 |
| HpyCH4III | ACNGT | 5 cut(s) | 278, 572, 1671, 1743, 2363 |
| HpyCH4IV | ACGT | 2 cut(s) | 1680, 2340 |
| HpyCH4V | TGCA | 8 cut(s) | 174, 589, 1206, 1475, 1518, 1661, 1813, 2423 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 411, 696, 2186, 2477 |
| HpySE526I | ACGT | 2 cut(s) | 1680, 2340 |
| Hsp92II | CATG | 5 cut(s) | 170, 232, 448, 1584, 2338 |
| HspAI | GCGC | 1 cut(s) | 222 |
| Kpn2I | TCCGGA | 1 cut(s) | 1611 |
| KspAI | GTTAAC | 1 cut(s) | 744 |
| Kzo9I | GATC | 7 cut(s) | 607, 1117, 1401, 1543, 1987, 2184, 2253 |
| LmnI | GCTCC | 5 cut(s) | 1044, 1116, 1308, 1433, 2086 |
| Lsp1109I | GCAGC | 1 cut(s) | 1878 |
| LweI | GCATC | 2 cut(s) | 1648, 1973 |
| MaeI | CTAG | 7 cut(s) | 410, 671, 959, 974, 1146, 2264, 2624 |
| MaeII | ACGT | 2 cut(s) | 1680, 2340 |
| MalI | GATC | 7 cut(s) | 609, 1119, 1403, 1545, 1989, 2186, 2255 |
| MbiI | CCGCTC | 1 cut(s) | 1453 |
| MboI | GATC | 7 cut(s) | 607, 1117, 1401, 1543, 1987, 2184, 2253 |
| MflI | RGATCY | 1 cut(s) | 1401 |
| MhlI | GDGCHC | 4 cut(s) | 480, 1041, 1328, 1438 |
| MlsI | TGGCCA | 1 cut(s) | 2240 |
| MluNI | TGGCCA | 1 cut(s) | 2240 |
| MlyI | GAGTC | 4 cut(s) | 179, 234, 2267, 2308 |
| MmeI | TCCRAC | 1 cut(s) | 1112 |
| Mox20I | TGGCCA | 1 cut(s) | 2240 |
| MroI | TCCGGA | 1 cut(s) | 1611 |
| MroXI | GAANNNNTTC | 2 cut(s) | 770, 1085 |
| MscI | TGGCCA | 1 cut(s) | 2240 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2339 |
| Msp20I | TGGCCA | 1 cut(s) | 2240 |
| MspCI | CTTAAG | 2 cut(s) | 1793, 2246 |
| MspI | CCGG | 5 cut(s) | 92, 1125, 1566, 1612, 2615 |
| MspR9I | CCNGG | 1 cut(s) | 92 |
| Mva1269I | GAATGC | 1 cut(s) | 369 |
| MvnI | CGCG | 1 cut(s) | 224 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 411, 696, 2186, 2477 |
| NciI | CCSGG | 1 cut(s) | 92 |
| NdeII | GATC | 7 cut(s) | 607, 1117, 1401, 1543, 1987, 2184, 2253 |
| NlaIII | CATG | 5 cut(s) | 170, 232, 448, 1584, 2338 |
| NlaIV | GGNNCC | 5 cut(s) | 118, 850, 1310, 2029, 2099 |
| NmuCI | GTSAC | 5 cut(s) | 182, 305, 1527, 1671, 2259 |
| NspI | RCATGY | 1 cut(s) | 448 |
| NspV | TTCGAA | 1 cut(s) | 1362 |
| PaeI | GCATGC | 1 cut(s) | 448 |
| PagI | TCATGA | 1 cut(s) | 228 |
| PctI | GAATGC | 1 cut(s) | 369 |
| PdmI | GAANNNNTTC | 2 cut(s) | 770, 1085 |
| PfeI | GAWTC | 5 cut(s) | 127, 1160, 1606, 1767, 2159 |
| PinAI | ACCGGT | 1 cut(s) | 1565 |
| PkrI | GCNGC | 1 cut(s) | 1893 |
| PleI | GAGTC | 4 cut(s) | 179, 234, 2266, 2308 |
| PpsI | GAGTC | 4 cut(s) | 179, 234, 2266, 2308 |
| PpuMI | RGGWCCY | 2 cut(s) | 2028, 2098 |
| PshBI | ATTAAT | 1 cut(s) | 1074 |
| Psp124BI | GAGCTC | 3 cut(s) | 480, 1041, 1328 |
| Psp5II | RGGWCCY | 2 cut(s) | 2028, 2098 |
| PspN4I | GGNNCC | 5 cut(s) | 118, 850, 1310, 2029, 2099 |
| PspPI | GGNCC | 7 cut(s) | 116, 246, 1568, 1756, 1847, 2028, 2098 |
| PspPPI | RGGWCCY | 2 cut(s) | 2028, 2098 |
| PstI | CTGCAG | 1 cut(s) | 1520 |
| PstNI | CAGNNNCTG | 1 cut(s) | 249 |
| PsuI | RGATCY | 1 cut(s) | 1401 |
| RsaI | GTAC | 3 cut(s) | 755, 795, 1398 |
| RsaNI | GTAC | 3 cut(s) | 754, 794, 1397 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2339 |
| SacI | GAGCTC | 3 cut(s) | 480, 1041, 1328 |
| SatI | GCNGC | 1 cut(s) | 1892 |
| Sau3AI | GATC | 7 cut(s) | 607, 1117, 1401, 1543, 1987, 2184, 2253 |
| Sau96I | GGNCC | 7 cut(s) | 116, 246, 1568, 1756, 1847, 2028, 2098 |
| SchI | GAGTC | 4 cut(s) | 179, 234, 2267, 2308 |
| ScrFI | CCNGG | 1 cut(s) | 92 |
| SduI | GDGCHC | 4 cut(s) | 480, 1041, 1328, 1438 |
| SfaNI | GCATC | 2 cut(s) | 1648, 1973 |
| SfcI | CTRYAG | 3 cut(s) | 1516, 1739, 2055 |
| SfuI | TTCGAA | 1 cut(s) | 1362 |
| SinI | GGWCC | 6 cut(s) | 116, 1568, 1756, 1847, 2028, 2098 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2339 |
| SmlI | CTYRAG | 3 cut(s) | 1793, 1901, 2246 |
| SmoI | CTYRAG | 3 cut(s) | 1793, 1901, 2246 |
| SphI | GCATGC | 1 cut(s) | 448 |
| SsiI | CCGC | 6 cut(s) | 224, 453, 502, 788, 1451, 1894 |
| SspI | AATATT | 1 cut(s) | 1103 |
| SspMI | CTAG | 7 cut(s) | 410, 671, 959, 974, 1146, 2264, 2624 |
| SstI | GAGCTC | 3 cut(s) | 480, 1041, 1328 |
| StyD4I | CCNGG | 1 cut(s) | 90 |
| StyI | CCWWGG | 5 cut(s) | 60, 409, 973, 1179, 1712 |
| TaaI | ACNGT | 5 cut(s) | 278, 572, 1671, 1743, 2363 |
| TaiI | ACGT | 2 cut(s) | 1683, 2343 |
| TaqI | TCGA | 7 cut(s) | 1116, 1175, 1362, 1677, 1693, 2201, 2256 |
| TaqII | GACCGA | 1 cut(s) | 695 |
| TatI | WGTACW | 1 cut(s) | 793 |
| TfiI | GAWTC | 5 cut(s) | 127, 1160, 1606, 1767, 2159 |
| TscAI | CASTG | 9 cut(s) | 262, 487, 781, 922, 1208, 1219, 1288, 1930, 2187 |
| TseFI | GTSAC | 5 cut(s) | 182, 305, 1527, 1671, 2259 |
| TseI | GCWGC | 1 cut(s) | 1891 |
| Tsp45I | GTSAC | 5 cut(s) | 182, 305, 1527, 1671, 2259 |
| TspGWI | ACGGA | 4 cut(s) | 8, 1414, 1506, 1779 |
| TspRI | CASTG | 9 cut(s) | 262, 487, 781, 922, 1208, 1219, 1288, 1930, 2187 |
| Vha464I | CTTAAG | 2 cut(s) | 1793, 2246 |
| VpaK11BI | GGWCC | 6 cut(s) | 116, 1568, 1756, 1847, 2028, 2098 |
| VspI | ATTAAT | 1 cut(s) | 1074 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1866 |
| XceI | RCATGY | 1 cut(s) | 448 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1302 |
| XmaJI | CCTAGG | 2 cut(s) | 409, 973 |
| XmiI | GTMKAC | 1 cut(s) | 395 |
| XmnI | GAANNNNTTC | 2 cut(s) | 770, 1085 |
| XspI | CTAG | 7 cut(s) | 410, 671, 959, 974, 1146, 2264, 2624 |