RchiOBHm_Chr5g0083471

Receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000024
Physical Location & Seq
Forward (+)
89167819 .. 89170533
2715 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35762

Sequence Viewer

Length: 2715 bp
ATGGGGTTATCATCTCTATGTTTAGCATTTGCGTCGATGTTTATCCTTTCAAAACTTGTCTTGTCACGTCTTGTGATGGCCGACTCTTTACAATCATATACTCCTCCTTGCCATGATGACGAGATCTTTGCCTTGCTACAATTCAAGCAAAGCTTTGTCATTCACATGTCTGCTTCACGTTGTGAGGCTGCTGCTCATCTAAAGATTTCTTCATGGAAATCAAACAGCAATTGTTGCTCATGGGACGGGGTCGAGTGTGATGAAGAGACTCGTCAGGTGATTGGACTTGATCTTAGTAGCAGTTGTCTCTATGGCTCTATCAACTCCAATAGCACCCTCTTCCGCCTTTTTCATCTTGAGAGTCTCAACCTTGCTCACAATAATTTCAATTTCTCTCAAATTCCTCCTACCGTTAGGAACTTTCCAAAGCTCAGGTATCTCAACCTCTCTTACTCTAACTTTTCTGGTCAAGTCCCGTCTGAAGTTTCACAATTGACCAAGTTGTCATCCCTTGATCTATCTTACAATGAAGATATGTTTTCGAATGAAGAATTGCTACGAAGCCTAGCTCAAAATTTGACTGACCTAGAAACACTTGATCTTTCTTCCATTAATATATCATCCACAACACTTAATACCTTCGCCAATTTGTCACATTTGACATCCCTCGTCCTAGCTGAATGCGGCATGTTCGGCAAATTACCATTTTCTCTTGGTAATCTCAGACATCTCATCTATTTGGACCTTTCAATGAATGAGTTCAATGGCCAAATTCCTTCTTCATTTGCCAATCTTACCCAACTCACATATTTTTCACTTGGGGGGAACTATATTAACGGCATTATCCCATGTTCTTTAGGAAATCTTACCCAGCTCACAATCCTTCGTCTTTATCAAAATCAATTATCTGGTCCAATCCCATCTTGTCTAGGTAATCTTGGCAAACTTACTGTTCTAGACCTTGATTTCAATAAATTTCAGGGAGAGATTCCTGAGTCATTATTGAATGTAGTAAGGCTCAAGGGACTTCTTCTAGCTTATAATACTCTCAGTGGTACAGTGGAGTTCCTCAAACTTCTTAAGCCGCTACCAAATTTAAAGTGGGTAGATCTATCTGGTAACAACTTGGATGTGATCACTGAAACCAGAACTATGAATGCATCTAGCATTCCAAGGTTAGAGATGCTAGGATTGGGTTCGTGCAATATAAGAAAGTTCCCAAACTTCCTAAGATATCAAGATACATTGGAGTTCTTGAACCTTTCTCGGAACGGAATACATGGCCAAGTACCAAAATGGATGTGGAACATAAGTAGAGAGTCTTTGGCGTTGTTGGACATTTCTCATAACCTCCTTTCAGGCCTTGACCAGCCTCCGGTTGTCCTTCCCTGGGTTGATCTAGCAGGGCTAGATCTTTCGTTCAACAGGCTTAGTGGCCCATTGTCGGTACCTTCCTCACAATATATGAAGTTCTATCACATTTCAAACAACAAAATAACTGGAGAAATTTCACCTTTGATTTGTAATGCGAGATCTCTTAATTCCCTTGATGTGTCAAATAACAATTTGAGTGGTATGCTTCCGCGGTGTCTCGGAAACTTAAGTAGTCTTGAAGTTTTAAGTGTTGGAAACAACTATTTTCATGGCACTCTTCCTCATTTATGCCCCACCAATGGAAGCGATTTGATGCTGATTGATGTCAGTCGTAACCAACTGCAGGGGAAATTACCGAGGTCATTGGCGAATTGTTTGAGGCTCGAGTCTCTCGTTCTGTCAAGCAATAAGTTCGATGATGTATTCCCCGTTTGGTTGGGGACTCTTTCGGAATTAAAAGTTTTGGCAATGAGGAATAGTGGGTTCTACGGTGCTATTCCGAGACATCAAAGCAATCATGATGATGGTTTCCCCAATTTGCGCATCCTTGATCTGTCTCAAAATAATTTTACCGGTCAGTTTGCATTTGAATTCATCCTCTCTGGAAAATCAATGAGAGGTATCCATCTAGACGGATCAAAGTACATGAGAGCATTTGAATTGGTAGCTGTAGAATCCGGACCCGGTGGGGGGTATTATGAAGGCTTTTACTTCTATGAGTACTCAATCACGCTGATGAATAAAGGTTTACAGAGATACTTCCAAAAGATTCGTGAAGACTTTATGGCCATCGATCTGTCGAGCAATAGATTTGAAGGCAAGATTCCAGAATTTATTGGGAACCTAAAGGGGCTTCGCTCACTTAATGTATCCAGTAACATTCTAAGTGGCCGCATCCCACCATCCTTGGGAAACTTGACAAATCTTGAAGCTTTGGACCTTTCACATAACAACTTCTTGGGTGAGATCCCTCCATCACTGTTGCAGCTTTCATTCCTCCAAATTTTCAGCGTCTCCTACAACAATCTCAAAGGTCAAATACCGGTTGGAAACCAGTTTAGTACCTTTGAAGTCACTTCATATGAAGGCAACCCAGGTTTGTGTGGAGTTCCATTGCCAAAGAAATGTTCGCGTCCTGAGGGGGTTGAACTTCCGCATTCAACAGCAGAAGAAGATGGAGTTGAATTGGATTGGAAATTTGTTGCGGCGGGGTTAGTGAGTGGGTTGGTGGTGGGAGTGGTTCTTGCAGACTTTGTGACCACGAGGTTCAGTGTGCGGTTCATTGAGATTGTTGCATTGCTGATCAGACTGATGAAAAGGATGAGAAGGCCCAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

904

Amino Acids

100.45

Weight (kDa)

6.31

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 38 - 87 8.5e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 96 - 223 1.8e-09 Leucine-rich repeat region
LRR_8 PF13855 118 - 176 4.4e-06 Leucine rich repeat
LRR_14 PF23598 199 - 398 1.3e-15 Leucine-rich repeat region
LRR_14 PF23598 264 - 448 9.4e-08 Leucine-rich repeat region
LRR_8 PF13855 721 - 777 8.7e-07 Leucine rich repeat
LRR_LRWD1 PF23211 741 - 825 2.1e-06 Leucine-rich repeat and WD repeat-containing protein 1, LRR
LRR_4 PF12799 742 - 783 9.8e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000024)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45616 AT1G47890 AT2G25440 AT2G32660 AT2G32660 AT2G32680 AT2G33020 AT2G33030 AT2G33050 AT2G33060 AT2G33080 AT3G24900 AT3G24900 AT3G24982 AT3G25010 AT3G25010 AT3G25020 AT4G13810 AT4G13810 AT4G13810 AT4G13820 AT4G13880 AT4G13920 AT5G40170
fragaria_vesca FvH4_2g05950 FvH4_3g24110 FvH4_5g04000 FvH4_6g04890 FvH4_6g31760 FvH4_6g40760 FvH4_6g40800 FvH4_6g40820 FvH4_6g40840 FvH4_6g40842 FvH4_6g40843 FvH4_6g40847 FvH4_7g06093 FvH4_7g10111 FvH4_7g10112 FvH4_7g10113 FvH4_7g10114 FvH4_7g10130 FvH4_7g10150 FvH4_7g31280
malus_domestica MD00G1164200.v1.1 MD00G1164300.v1.1 MD01G1109000.v1.1 MD01G1109100.v1.1 MD07G1068900.v1.1 MD07G1069000.v1.1 MD07G1069300.v1.1 MD07G1069600.v1.1 MD07G1106700.v1.1 MD07G1106900.v1.1 MD07G1107200.v1.1 MD07G1107300.v1.1 MD07G1107400.v1.1 MD07G1107800.v1.1 MD09G1124300.v1.1 MD09G1124700.v1.1 MD09G1124800.v1.1 MD09G1124900.v1.1 MD09G1125100.v1.1 MD09G1125300.v1.1 MD09G1125400.v1.1 MD09G1125500.v1.1 MD09G1125600.v1.1 MD09G1130600.v1.1 MD09G1130900.v1.1 MD09G1131100.v1.1 MD17G1115000.v1.1 MD17G1115100.v1.1 MD17G1115300.v1.1 MD17G1115500.v1.1
prunus_persica Prupe.2G128400_v2.0.a1 Prupe.2G128600_v2.0.a1 Prupe.2G128700_v2.0.a1 Prupe.2G130100_v2.0.a1 Prupe.2G130300_v2.0.a1 Prupe.2G130400_v2.0.a1 Prupe.2G130500_v2.0.a1 Prupe.2G130600_v2.0.a1 Prupe.2G130700_v2.0.a1 Prupe.2G130900_v2.0.a1 Prupe.2G131000_v2.0.a1 Prupe.3G094800_v2.0.a1 Prupe.3G094900_v2.0.a1 Prupe.3G195900_v2.0.a1 Prupe.3G196000_v2.0.a1 Prupe.3G196000_v2.0.a1 Prupe.3G199200_v2.0.a1 Prupe.3G199200_v2.0.a1 Prupe.3G199400_v2.0.a1 Prupe.3G199500_v2.0.a1 Prupe.3G199900_v2.0.a1 Prupe.3G200000_v2.0.a1 Prupe.4G168900_v2.0.a1 Prupe.4G232400_v2.0.a1 Prupe.4G233100_v2.0.a1 Prupe.4G233100_v2.0.a1 Prupe.4G233200_v2.0.a1 Prupe.4G233600_v2.0.a1 Prupe.4G234000_v2.0.a1 Prupe.4G234200_v2.0.a1 Prupe.4G279000_v2.0.a1 Prupe.4G279000_v2.0.a1
pyrus_communis pycom01g13640 pycom05g05290 pycom05g05300 pycom05g05310 pycom05g05320 pycom07g05310 pycom07g05920 pycom07g09130 pycom07g09160 pycom07g09190 pycom07g09210 pycom09g04810 pycom09g04820 pycom09g04850 pycom09g04860 pycom09g04870 pycom09g04930 pycom09g04940 pycom09g04960 pycom09g04980 pycom11g17040 pycom11g17080 pycom11g17100 pycom17g10620 pycom17g10640 pycom17g10650 pycom17g10660
rosa_chinensis RchiOBHm_Chr1g0340311 RchiOBHm_Chr1g0340341 RchiOBHm_Chr1g0340351 RchiOBHm_Chr1g0340361 RchiOBHm_Chr1g0340411 RchiOBHm_Chr1g0340481 RchiOBHm_Chr1g0340521 RchiOBHm_Chr1g0340591 RchiOBHm_Chr1g0340631 RchiOBHm_Chr1g0340681 RchiOBHm_Chr1g0344431 RchiOBHm_Chr1g0346361 RchiOBHm_Chr1g0347011 RchiOBHm_Chr1g0347021 RchiOBHm_Chr1g0347031 RchiOBHm_Chr1g0347041 RchiOBHm_Chr1g0347561 RchiOBHm_Chr1g0347571 RchiOBHm_Chr1g0347811 RchiOBHm_Chr1g0347841 RchiOBHm_Chr1g0347861 RchiOBHm_Chr1g0348951 RchiOBHm_Chr1g0357511 RchiOBHm_Chr1g0367531 RchiOBHm_Chr1g0368411 RchiOBHm_Chr2g0154781 RchiOBHm_Chr2g0154841 RchiOBHm_Chr2g0155021 RchiOBHm_Chr2g0155091 RchiOBHm_Chr2g0155101 RchiOBHm_Chr2g0156211 RchiOBHm_Chr2g0156251 RchiOBHm_Chr2g0156281 RchiOBHm_Chr2g0156371 RchiOBHm_Chr2g0156381 RchiOBHm_Chr2g0156411 RchiOBHm_Chr2g0173751 RchiOBHm_Chr3g0494931 RchiOBHm_Chr4g0385161 RchiOBHm_Chr4g0385171 RchiOBHm_Chr4g0408231 RchiOBHm_Chr4g0408241 RchiOBHm_Chr5g0005251 RchiOBHm_Chr5g0030911 RchiOBHm_Chr5g0042831 RchiOBHm_Chr5g0042871 RchiOBHm_Chr5g0042881 RchiOBHm_Chr5g0043081 RchiOBHm_Chr5g0043131 RchiOBHm_Chr5g0043361 RchiOBHm_Chr5g0043371 RchiOBHm_Chr5g0043381 RchiOBHm_Chr5g0083391 RchiOBHm_Chr5g0083401 RchiOBHm_Chr5g0083441 RchiOBHm_Chr5g0083451 RchiOBHm_Chr5g0083461 RchiOBHm_Chr5g0083471 RchiOBHm_Chr5g0083501 RchiOBHm_Chr5g0083531 RchiOBHm_Chr5g0083601 RchiOBHm_Chr5g0083611 RchiOBHm_Chr5g0083651 RchiOBHm_Chr6g0257441 RchiOBHm_Chr6g0257601 RchiOBHm_Chr6g0257621 RchiOBHm_Chr6g0257631 RchiOBHm_Chr6g0263371 RchiOBHm_Chr6g0263391 RchiOBHm_Chr6g0263401 RchiOBHm_Chr6g0263411
rosa_laevigata RLG00000003361 RLG00000008615 RLG00000010252 RLG00000014349 RLG00000014351 RLG00000014359 RLG00000014696 RLG00000014706 RLG00000014711 RLG00000014712 RLG00000018865 RLG00000020803 RLG00000020804 RLG00000020808 RLG00000020811 RLG00000020812 RLG00000020816 RLG00000020817 RLG00000020818 RLG00000020896 RLG00000020902 RLG00000020904 RLG00000020905 RLG00000020906 RLG00000020907 RLG00000020908 RLG00000020909 RLG00000020910 RLG00000022216 RLG00000022218 RLG00000027211 RLG00000027212 RLG00000027213 RLG00000027214 RLG00000028474 RLG00000028475 RLG00000028613 RLG00000028708 RLG00000028709 RLG00000028737 RLG00000028738 RLG00000028764 RLG00000029010 RLG00000029012 RLG00000029019 RLG00000029022 RLG00000029025 RLG00000029027 RLG00000029031 RLG00000029035 RLG00000029141 RLG00000030130 RLG00000033005 RLG00000033271 RLG00000034150 RLG00000034153 RLG00000034158 RLG00000034160 RLG00000034164 RLG00000034166 RLG00000034167 RLG00000034183 RLG00000037034 RLG00000037035
rosa_multiflora Rmu_co8046282.1_g000001 Rmu_co8137732.1_g000001 Rmu_co8267491.1_g000001 Rmu_co8329695.1_g000001 Rmu_co8330005.1_g000001 Rmu_co8351095.1_g000001 Rmu_co8357797.1_g000001 Rmu_co8424479.1_g000001 Rmu_co8425575.1_g000001 Rmu_co8485497.1_g000001 Rmu_sc0000060.1_g000020 Rmu_sc0000260.1_g000009 Rmu_sc0000565.1_g000006 Rmu_sc0000566.1_g000023 Rmu_sc0000566.1_g000025 Rmu_sc0000566.1_g000031 Rmu_sc0000566.1_g000033 Rmu_sc0000566.1_g000036 Rmu_sc0000566.1_g000045 Rmu_sc0000566.1_g000048 Rmu_sc0000698.1_g000009 Rmu_sc0000698.1_g000031 Rmu_sc0000820.1_g000049 Rmu_sc0001099.1_g000008 Rmu_sc0001167.1_g000009 Rmu_sc0001167.1_g000070 Rmu_sc0001205.1_g000014 Rmu_sc0001444.1_g000008 Rmu_sc0001836.1_g000017 Rmu_sc0001836.1_g000021 Rmu_sc0001836.1_g000065 Rmu_sc0001974.1_g000014 Rmu_sc0002048.1_g000006 Rmu_sc0002048.1_g000018 Rmu_sc0002048.1_g000034 Rmu_sc0002079.1_g000008 Rmu_sc0002079.1_g000012 Rmu_sc0002079.1_g000034 Rmu_sc0002161.1_g000018 Rmu_sc0002245.1_g000018 Rmu_sc0002245.1_g000040 Rmu_sc0002538.1_g000004 Rmu_sc0002595.1_g000003 Rmu_sc0002595.1_g000004 Rmu_sc0002709.1_g000027 Rmu_sc0002709.1_g000043 Rmu_sc0003086.1_g000004 Rmu_sc0003188.1_g000002 Rmu_sc0003188.1_g000003 Rmu_sc0003301.1_g000003 Rmu_sc0003522.1_g000040 Rmu_sc0003785.1_g000004 Rmu_sc0003918.1_g000002 Rmu_sc0003918.1_g000015 Rmu_sc0004325.1_g000017 Rmu_sc0004355.1_g000007 Rmu_sc0004976.1_g000006 Rmu_sc0004976.1_g000010 Rmu_sc0004976.1_g000024 Rmu_sc0005144.1_g000016 Rmu_sc0005167.1_g000002 Rmu_sc0005451.1_g000002 Rmu_sc0006217.1_g000004 Rmu_sc0006908.1_g000027 Rmu_sc0008148.1_g000016 Rmu_sc0008148.1_g000044 Rmu_sc0008148.1_g000047 Rmu_sc0008734.1_g000012 Rmu_sc0008734.1_g000017 Rmu_sc0010137.1_g000014 Rmu_sc0010308.1_g000003 Rmu_sc0010719.1_g000001 Rmu_sc0014922.1_g000001 Rmu_sc0020148.1_g000001 Rmu_sc0024761.1_g000002 Rmu_sc0024761.1_g000003 Rmu_sc0027638.1_g000002 Rmu_sc0030439.1_g000001 Rmu_sc0033559.1_g000001 Rmu_sc0036789.1_g000001 Rmu_ssc0000173.1_g000015 Rmu_ssc0000245.1_g000025 Rmu_ssc0000342.1_g000001
rosa_roxburghii Rroxscaffold_1G00000980 Rroxscaffold_1G00000990 Rroxscaffold_1G00001050 Rroxscaffold_1G00001070 Rroxscaffold_1G00037490 Rroxscaffold_1G00037600 Rroxscaffold_1G00037640 Rroxscaffold_1G00037680 Rroxscaffold_1G00037700 Rroxscaffold_1G00037720 Rroxscaffold_1G00037780 Rroxscaffold_1G00037810 Rroxscaffold_2G00078660 Rroxscaffold_2G00093050 Rroxscaffold_2G00093070 Rroxscaffold_2G00093120 Rroxscaffold_2G00093140 Rroxscaffold_2G00093950 Rroxscaffold_2G00093980 Rroxscaffold_2G00093990 Rroxscaffold_2G00094050 Rroxscaffold_2G00094080 Rroxscaffold_2G00125300 Rroxscaffold_3G00218210 Rroxscaffold_4G00288530 Rroxscaffold_4G00288580 Rroxscaffold_4G00306260 Rroxscaffold_4G00306350 Rroxscaffold_4G00306420 Rroxscaffold_4G00307420 Rroxscaffold_4G00307660 Rroxscaffold_4G00307690 Rroxscaffold_4G00307720 Rroxscaffold_4G00311180 Rroxscaffold_4G00311220 Rroxscaffold_4G00311240 Rroxscaffold_4G00315940 Rroxscaffold_4G00315950 Rroxscaffold_5G00333080 Rroxscaffold_7G00208670 Rroxscaffold_7G00208690 Rroxscaffold_7G00208700 Rroxscaffold_7G00208710 Rroxscaffold_7G00208830 Rroxscaffold_7G00208840 Rroxscaffold_7G00208860
rosa_rugosa Rorug01G0052800 Rorug01G0052900 Rorug01G0084800 Rorug01G0162300.1 Rorug01G0162600.1 Rorug01G0162700.1 Rorug01G0163100.1 Rorug01G0163300.1 Rorug01G0163800.1 Rorug01G0163900.1 Rorug01G0164200.1 Rorug01G0164400.1 Rorug01G0187700 Rorug01G0187800 Rorug01G0189400 Rorug01G0189500 Rorug01G0189600 Rorug01G0189800 Rorug01G0190200 Rorug01G0190300 Rorug01G0198800 Rorug01G0341700 Rorug02G0445100 Rorug02G0445300 Rorug02G0445400 Rorug02G0452600 Rorug02G0452700 Rorug02G0452800 Rorug02G0453000 Rorug02G0522500 Rorug02G0572500 Rorug05G0203900 Rorug05G0204100 Rorug05G0204200 Rorug05G0204400 Rorug05G0205500 Rorug05G0205600 Rorug05G0484800 Rorug05G0484800 Rorug05G0484900 Rorug05G0570000 Rorug05G0570100 Rorug05G0570200 Rorug05G0570300.1 Rorug05G0570800 Rorug05G0570900 Rorug05G0572200 Rorug05G0572500
rosa_samantha Rh1AG178100 Rh1AG178500 Rh1AG178800 Rh1AG206800 Rh1AG207200 Rh1AG207700 Rh1AG348900 Rh2AG316000 Rh2BG522100 Rh2BG522400 Rh2BG530500 Rh2BG531000 Rh3AG317700 Rh4CG003500 Rh5AG289600 Rh5BG293800 Rh5BG294000 Rh5BG295500 Rh5BG296000 Rh5BG296300 Rh5BG297800 Rh5DG303900 Rh5DG305200 Rh5DG305500 Rh6AG126500
rosa_wichuraiana Rw0G002430 Rw0G013640 Rw1G014810 Rw1G014830 Rw1G014860 Rw1G014870 Rw1G014910 Rw1G017200 Rw1G017210 Rw1G017300 Rw1G017610 Rw1G017670 Rw1G017710 Rw1G017730 Rw1G018330 Rw1G018440 Rw1G031010 Rw1G031040 Rw1G031060 Rw2G042020 Rw2G042760 Rw2G042790 Rw2G042800 Rw2G053460 Rw2G053470 Rw4G000600 Rw5G019620 Rw5G027010 Rw5G049870 Rw5G050460 Rw5G050530 Rw6G007730 Rw6G007740 Rw6G007770 Rw6G007860 Rw6G010660 Rw6G010800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1041
AasI GACNNNNNNGTC 1 cut(s) 502
Acc16I TGCGCA 1 cut(s) 1916
Acc65I GGTACC 1 cut(s) 1447
AccB1I GGYRCC 1 cut(s) 1447
AccII CGCG 2 cut(s) 1585, 2506
AccIII TCCGGA 1 cut(s) 2051
AclWI GGATC 2 cut(s) 2017, 2335
AcoI YGGCCR 5 cut(s) 78, 766, 1282, 2160, 2263
AcuI CTGAAG 1 cut(s) 501
AdeI CACNNNGTG 1 cut(s) 182
AfaI GTAC 6 cut(s) 1057, 1290, 1449, 2018, 2096, 2437
AfiI CCNNNNNNNGG 8 cut(s) 1375, 1390, 1444, 1673, 1717, 2063, 2064, 2282
AflII CTTAAG 2 cut(s) 1079, 1600
AflIII ACRYGT 1 cut(s) 165
AgeI ACCGGT 2 cut(s) 1946, 2416
AjiI CACGTC 1 cut(s) 68
AjnI CCWGG 2 cut(s) 1388, 2467
AjuI GAANNNNNNNTTGG 2 cut(s) 2485, 2517
AluBI AGCT 9 cut(s) 153, 430, 569, 677, 874, 1037, 2042, 2306, 2362
AluI AGCT 9 cut(s) 153, 430, 569, 677, 874, 1037, 2042, 2306, 2362
Alw26I GTCTC 8 cut(s) 260, 311, 368, 1595, 1767, 1870, 1935, 2392
AlwI GGATC 2 cut(s) 2017, 2335
Ama87I CYCGRG 1 cut(s) 1757
Aor13HI TCCGGA 1 cut(s) 2051
AoxI GGCC 8 cut(s) 78, 766, 1282, 1360, 1435, 2160, 2263, 2702
ApeKI GCWGC 3 cut(s) 188, 191, 2359
ArsI GACNNNNNNTTYG 2 cut(s) 110, 142
AseI ATTAAT 1 cut(s) 612
AsiGI ACCGGT 2 cut(s) 1946, 2416
Asp700I GAANNNNTTC 1 cut(s) 758
Asp718I GGTACC 1 cut(s) 1447
AspLEI GCGC 1 cut(s) 1917
AspS9I GGNCC 6 cut(s) 742, 911, 1436, 2054, 2311, 2703
AsuC2I CCSGG 1 cut(s) 2058
AsuHPI GGTGA 3 cut(s) 289, 1503, 2348
AsuII TTCGAA 1 cut(s) 542
AvaI CYCGRG 1 cut(s) 1757
AvaII GGWCC 4 cut(s) 742, 911, 2054, 2311
AxyI CCTNAGG 1 cut(s) 2511
BalI TGGCCA 3 cut(s) 768, 1284, 2162
BanI GGYRCC 1 cut(s) 1447
BarI GAAGNNNNNNTAC 2 cut(s) 540, 572
BauI CACGAG 1 cut(s) 2635
BbsI GAAGAC 1 cut(s) 2157
BbvI GCAGC 3 cut(s) 175, 178, 2371
BccI CCATC 8 cut(s) 70, 928, 1892, 2007, 2171, 2284, 2356, 2543
BceAI ACGGC 1 cut(s) 853
BcgI CGANNNNNNTGC 6 cut(s) 15, 49, 110, 144, 1768, 1802
BciT130I CCWGG 2 cut(s) 1390, 2469
BciVI GTATCC 2 cut(s) 2006, 2254
BclI TGATCA 2 cut(s) 1134, 2676
BcnI CCSGG 1 cut(s) 2058
BcoDI GTCTC 8 cut(s) 260, 311, 368, 1595, 1767, 1870, 1935, 2392
BfmI CTRYAG 2 cut(s) 1715, 2043
BfrI CTTAAG 2 cut(s) 1079, 1600
BfuI GTATCC 2 cut(s) 2006, 2254
BglII AGATCT 4 cut(s) 123, 1108, 1411, 1532
BisI GCNGC 7 cut(s) 189, 192, 685, 1085, 2266, 2360, 2580
BlsI GCNGC 7 cut(s) 190, 193, 686, 1086, 2267, 2361, 2581
BmcAI AGTACT 1 cut(s) 2096
Bme1390I CCNGG 3 cut(s) 1390, 2058, 2469
Bme18I GGWCC 4 cut(s) 742, 911, 2054, 2311
BmeT110I CYCGRG 1 cut(s) 1757
BmgBI CACGTC 1 cut(s) 68
BmgT120I GGNCC 6 cut(s) 742, 911, 1436, 2054, 2311, 2703
BmiI GGNNCC 3 cut(s) 1449, 2056, 2216
BmrFI CCNGG 3 cut(s) 1390, 2058, 2469
BmsI GCATC 5 cut(s) 1169, 1173, 1677, 1926, 2277
BpiI GAAGAC 1 cut(s) 2157
BpmI CTGGAG 1 cut(s) 1521
Bpu10I CCTNAGC 1 cut(s) 431
Bpu14I TTCGAA 1 cut(s) 542
BpuEI CTTGAG 2 cut(s) 377, 1004
BpuMI CCSGG 1 cut(s) 2058
Bsa29I ATCGAT 1 cut(s) 2166
BsaBI GATNNNNATC 1 cut(s) 41
BsaJI CCNNGG 7 cut(s) 1172, 1388, 1389, 1583, 1730, 2280, 2467
BsaWI WCCGGW 4 cut(s) 1375, 1946, 2051, 2416
Bsc4I CCNNNNNNNGG 8 cut(s) 1375, 1390, 1444, 1673, 1717, 2063, 2064, 2282
Bse118I RCCGGY 2 cut(s) 1946, 2416
Bse1I ACTGG 3 cut(s) 1504, 2247, 2428
Bse21I CCTNAGG 1 cut(s) 2511
Bse3DI GCAATG 3 cut(s) 1848, 2486, 2669
Bse8I GATNNNNATC 1 cut(s) 41
BseAI TCCGGA 1 cut(s) 2051
BseBI CCWGG 2 cut(s) 1390, 2469
BseCI ATCGAT 1 cut(s) 2166
BseDI CCNNGG 7 cut(s) 1172, 1388, 1389, 1583, 1730, 2280, 2467
BseJI GATNNNNATC 1 cut(s) 41
BseLI CCNNNNNNNGG 8 cut(s) 1375, 1390, 1444, 1673, 1717, 2063, 2064, 2282
BseMI GCAATG 3 cut(s) 1848, 2486, 2669
BseMII CTCAG 5 cut(s) 445, 736, 984, 1063, 2502
BseNI ACTGG 3 cut(s) 1504, 2247, 2428
BseRI GAGGAG 1 cut(s) 93
BseXI GCAGC 3 cut(s) 175, 178, 2371
BseYI CCCAGC 1 cut(s) 870
Bsh1236I CGCG 2 cut(s) 1585, 2506
BshFI GGCC 8 cut(s) 80, 768, 1284, 1362, 1437, 2162, 2265, 2704
BshNI GGYRCC 1 cut(s) 1447
BshTI ACCGGT 2 cut(s) 1946, 2416
BshVI ATCGAT 1 cut(s) 2166
BsiHKCI CYCGRG 1 cut(s) 1757
BsiSI CCGG 5 cut(s) 1376, 1947, 2052, 2058, 2417
BslFI GGGAC 4 cut(s) 257, 458, 1038, 1828
BslI CCNNNNNNNGG 8 cut(s) 1375, 1390, 1444, 1673, 1717, 2063, 2064, 2282
BsmAI GTCTC 8 cut(s) 260, 311, 368, 1595, 1767, 1870, 1935, 2392
BsmBI CGTCTC 1 cut(s) 2392
BsmFI GGGAC 4 cut(s) 257, 458, 1038, 1828
BsmI GAATGC 4 cut(s) 686, 1162, 1167, 2530
BsnI GGCC 8 cut(s) 80, 768, 1284, 1362, 1437, 2162, 2265, 2704
BsoBI CYCGRG 1 cut(s) 1757
Bsp119I TTCGAA 1 cut(s) 542
Bsp13I TCCGGA 1 cut(s) 2051
BspANI GGCC 8 cut(s) 80, 768, 1284, 1362, 1437, 2162, 2265, 2704
BspCNI CTCAG 5 cut(s) 444, 735, 985, 1062, 2503
BspDI ATCGAT 1 cut(s) 2166
BspEI TCCGGA 1 cut(s) 2051
BspFNI CGCG 2 cut(s) 1585, 2506
BspHI TCATGA 1 cut(s) 1891
BspLI GGNNCC 3 cut(s) 1449, 2056, 2216
BspMAI CTGCAG 1 cut(s) 1719
BspPI GGATC 2 cut(s) 2017, 2335
BspT104I TTCGAA 1 cut(s) 542
BspT107I GGYRCC 1 cut(s) 1447
BspTI CTTAAG 2 cut(s) 1079, 1600
BsrDI GCAATG 3 cut(s) 1848, 2486, 2669
BsrFI RCCGGY 2 cut(s) 1946, 2416
BsrI ACTGG 3 cut(s) 1504, 2247, 2428
BssAI RCCGGY 2 cut(s) 1946, 2416
BssECI CCNNGG 7 cut(s) 1172, 1388, 1389, 1583, 1730, 2280, 2467
BssSI CACGAG 1 cut(s) 2635
BssT1I CCWWGG 2 cut(s) 1172, 2280
Bst2BI CACGAG 1 cut(s) 2635
Bst2UI CCWGG 2 cut(s) 1390, 2469
Bst4CI ACNGT 5 cut(s) 412, 952, 1060, 1865, 2355
Bst6I CTCTTC 3 cut(s) 258, 344, 1656
BstAFI CTTAAG 2 cut(s) 1079, 1600
BstAPI GCANNNNNTGC 1 cut(s) 234
BstBI TTCGAA 1 cut(s) 542
BstDEI CTNAG 9 cut(s) 293, 431, 722, 993, 1049, 1229, 1430, 2258, 2511
BstDSI CCRYGG 1 cut(s) 1583
BstFNI CGCG 2 cut(s) 1585, 2506
BstHHI GCGC 1 cut(s) 1917
BstMAI GTCTC 8 cut(s) 260, 311, 368, 1595, 1767, 1870, 1935, 2392
BstMWI GCNNNNNNNGC 2 cut(s) 234, 693
BstNI CCWGG 2 cut(s) 1390, 2469
BstNSI RCATGY 2 cut(s) 169, 691
BstSCI CCNGG 3 cut(s) 1388, 2056, 2467
BstSFI CTRYAG 2 cut(s) 1715, 2043
BstUI CGCG 2 cut(s) 1585, 2506
BstV1I GCAGC 3 cut(s) 175, 178, 2371
BstV2I GAAGAC 1 cut(s) 2157
BstX2I RGATCY 5 cut(s) 123, 1108, 1411, 1532, 2340
BstYI RGATCY 5 cut(s) 123, 1108, 1411, 1532, 2340
Bsu15I ATCGAT 1 cut(s) 2166
Bsu36I CCTNAGG 1 cut(s) 2511
BsuI GTATCC 2 cut(s) 2006, 2254
BsuRI GGCC 8 cut(s) 80, 768, 1284, 1362, 1437, 2162, 2265, 2704
BsuTUI ATCGAT 1 cut(s) 2166
BtgI CCRYGG 1 cut(s) 1583
BtrI CACGTC 1 cut(s) 68
BtsIMutI CAGTG 5 cut(s) 1057, 1065, 1137, 2351, 2650
CciI TCATGA 1 cut(s) 1891
CfoI GCGC 1 cut(s) 1917
Cfr10I RCCGGY 2 cut(s) 1946, 2416
Cfr13I GGNCC 6 cut(s) 742, 911, 1436, 2054, 2311, 2703
Cfr42I CCGCGG 1 cut(s) 1586
ClaI ATCGAT 1 cut(s) 2166
CseI GACGC 3 cut(s) 21, 2374, 2495
Csp6I GTAC 6 cut(s) 1056, 1289, 1448, 2017, 2095, 2436
CspAI ACCGGT 2 cut(s) 1946, 2416
CspCI CAANNNNNGTGG 4 cut(s) 1552, 1587, 2262, 2297
CviQI GTAC 6 cut(s) 1056, 1289, 1448, 2017, 2095, 2436
DdeI CTNAG 9 cut(s) 293, 431, 722, 993, 1049, 1229, 1430, 2258, 2511
DraI TTTAAA 1 cut(s) 1098
DraIII CACNNNGTG 1 cut(s) 182
DrdI GACNNNNNNGTC 1 cut(s) 502
DseDI GACNNNNNNGTC 1 cut(s) 502
EaeI YGGCCR 5 cut(s) 78, 766, 1282, 2160, 2263
Eam1104I CTCTTC 3 cut(s) 258, 344, 1656
EarI CTCTTC 3 cut(s) 258, 344, 1656
EciI GGCGGA 1 cut(s) 332
Eco130I CCWWGG 2 cut(s) 1172, 2280
Eco147I AGGCCT 1 cut(s) 1362
Eco32I GATATC 1 cut(s) 1235
Eco47I GGWCC 4 cut(s) 742, 911, 2054, 2311
Eco57I CTGAAG 1 cut(s) 501
Eco81I CCTNAGG 1 cut(s) 2511
Eco88I CYCGRG 1 cut(s) 1757
EcoRI GAATTC 1 cut(s) 1964
EcoRII CCWGG 2 cut(s) 1388, 2467
EcoRV GATATC 1 cut(s) 1235
EcoT14I CCWWGG 2 cut(s) 1172, 2280
EcoT22I ATGCAT 1 cut(s) 1162
ErhI CCWWGG 2 cut(s) 1172, 2280
Esp3I CGTCTC 1 cut(s) 2392
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FaqI GGGAC 4 cut(s) 257, 458, 1038, 1828
FauI CCCGC 1 cut(s) 2575
FauNDI CATATG 1 cut(s) 2455
FbaI TGATCA 2 cut(s) 1134, 2676
Fnu4HI GCNGC 7 cut(s) 189, 192, 685, 1085, 2266, 2360, 2580
Fsp4HI GCNGC 7 cut(s) 189, 192, 685, 1085, 2266, 2360, 2580
FspI TGCGCA 1 cut(s) 1916
GlaI GCGC 1 cut(s) 1916
GluI GCNGC 7 cut(s) 189, 192, 685, 1085, 2266, 2360, 2580
GsaI CCCAGC 1 cut(s) 874
GsuI CTGGAG 1 cut(s) 1521
HaeIII GGCC 8 cut(s) 80, 768, 1284, 1362, 1437, 2162, 2265, 2704
HapII CCGG 5 cut(s) 1376, 1947, 2052, 2058, 2417
HgaI GACGC 3 cut(s) 21, 2374, 2495
HhaI GCGC 1 cut(s) 1917
Hin6I GCGC 1 cut(s) 1915
HinP1I GCGC 1 cut(s) 1915
HindIII AAGCTT 2 cut(s) 151, 2304
HpaII CCGG 5 cut(s) 1376, 1947, 2052, 2058, 2417
HphI GGTGA 3 cut(s) 289, 1503, 2348
Hpy166II GTNNAC 1 cut(s) 2123
Hpy188I TCNGA 7 cut(s) 481, 725, 1269, 1595, 1825, 1875, 2681
Hpy8I GTNNAC 1 cut(s) 2123
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 9 cut(s) 649, 786, 893, 1394, 1461, 2069, 2183, 2453, 2694
HpyCH4III ACNGT 5 cut(s) 412, 952, 1060, 1865, 2355
HpyCH4IV ACGT 2 cut(s) 67, 178
HpyCH4V TGCA 7 cut(s) 1160, 1203, 1717, 1958, 2359, 2621, 2669
HpyF10VI GCNNNNNNNGC 2 cut(s) 234, 693
HpyF3I CTNAG 9 cut(s) 293, 431, 722, 993, 1049, 1229, 1430, 2258, 2511
HpySE526I ACGT 2 cut(s) 67, 178
HspAI GCGC 1 cut(s) 1915
Kpn2I TCCGGA 1 cut(s) 2051
KpnI GGTACC 1 cut(s) 1451
Ksp22I TGATCA 2 cut(s) 1134, 2676
KspI CCGCGG 1 cut(s) 1586
Lsp1109I GCAGC 3 cut(s) 175, 178, 2371
LweI GCATC 5 cut(s) 1169, 1173, 1677, 1926, 2277
MaeII ACGT 2 cut(s) 67, 178
MaeIII GTNAC 7 cut(s) 63, 651, 1118, 1706, 2249, 2446, 2629
MfeI CAATTG 2 cut(s) 229, 491
MflI RGATCY 5 cut(s) 123, 1108, 1411, 1532, 2340
MlsI TGGCCA 3 cut(s) 768, 1284, 2162
MluNI TGGCCA 3 cut(s) 768, 1284, 2162
MlyI GAGTC 7 cut(s) 77, 262, 370, 1004, 1328, 1769, 1810
MmeI TCCRAC 3 cut(s) 1314, 1606, 2401
Mox20I TGGCCA 3 cut(s) 768, 1284, 2162
Mph1103I ATGCAT 1 cut(s) 1162
MroI TCCGGA 1 cut(s) 2051
MroXI GAANNNNTTC 1 cut(s) 758
MscI TGGCCA 3 cut(s) 768, 1284, 2162
MslI CAYNNNNRTG 4 cut(s) 16, 164, 1896, 2108
Msp20I TGGCCA 3 cut(s) 768, 1284, 2162
MspA1I CMGCKG 1 cut(s) 1585
MspCI CTTAAG 2 cut(s) 1079, 1600
MspI CCGG 5 cut(s) 1376, 1947, 2052, 2058, 2417
MspR9I CCNGG 3 cut(s) 1390, 2058, 2469
MunI CAATTG 2 cut(s) 229, 491
Mva1269I GAATGC 4 cut(s) 686, 1162, 1167, 2530
MvaI CCWGG 2 cut(s) 1390, 2469
MvnI CGCG 2 cut(s) 1585, 2506
MwoI GCNNNNNNNGC 2 cut(s) 234, 693
NciI CCSGG 1 cut(s) 2058
NdeI CATATG 1 cut(s) 2455
NlaIV GGNNCC 3 cut(s) 1449, 2056, 2216
NmuCI GTSAC 4 cut(s) 63, 651, 2446, 2629
NsbI TGCGCA 1 cut(s) 1916
NsiI ATGCAT 1 cut(s) 1162
NspI RCATGY 2 cut(s) 169, 691
NspV TTCGAA 1 cut(s) 542
PaeR7I CTCGAG 1 cut(s) 1757
PagI TCATGA 1 cut(s) 1891
PasI CCCWGGG 1 cut(s) 1389
PceI AGGCCT 1 cut(s) 1362
PciI ACATGT 1 cut(s) 165
PcsI WCGNNNNNNNCGW 1 cut(s) 1764
PctI GAATGC 4 cut(s) 686, 1162, 1167, 2530
PdmI GAANNNNTTC 1 cut(s) 758
PfeI GAWTC 4 cut(s) 988, 2048, 2143, 2197
PflFI GACNNNGTC 1 cut(s) 248
PinAI ACCGGT 2 cut(s) 1946, 2416
PkrI GCNGC 7 cut(s) 190, 193, 686, 1086, 2267, 2361, 2581
PleI GAGTC 7 cut(s) 77, 262, 369, 1003, 1327, 1768, 1810
PpsI GAGTC 7 cut(s) 77, 262, 369, 1003, 1327, 1768, 1810
PscI ACATGT 1 cut(s) 165
PshBI ATTAAT 1 cut(s) 612
PsiI TTATAA 1 cut(s) 1041
Psp6I CCWGG 2 cut(s) 1388, 2467
PspFI CCCAGC 1 cut(s) 870
PspGI CCWGG 2 cut(s) 1388, 2467
PspN4I GGNNCC 3 cut(s) 1449, 2056, 2216
PspPI GGNCC 6 cut(s) 742, 911, 1436, 2054, 2311, 2703
PspXI VCTCGAGB 1 cut(s) 1757
PstI CTGCAG 1 cut(s) 1719
PsuI RGATCY 5 cut(s) 123, 1108, 1411, 1532, 2340
PsyI GACNNNGTC 1 cut(s) 248
RsaI GTAC 6 cut(s) 1057, 1290, 1449, 2018, 2096, 2437
RsaNI GTAC 6 cut(s) 1056, 1289, 1448, 2017, 2095, 2436
RseI CAYNNNNRTG 4 cut(s) 16, 164, 1896, 2108
SacII CCGCGG 1 cut(s) 1586
SatI GCNGC 7 cut(s) 189, 192, 685, 1085, 2266, 2360, 2580
Sau96I GGNCC 6 cut(s) 742, 911, 1436, 2054, 2311, 2703
ScaI AGTACT 1 cut(s) 2096
SchI GAGTC 7 cut(s) 77, 262, 370, 1004, 1328, 1769, 1810
ScrFI CCNGG 3 cut(s) 1390, 2058, 2469
SfaNI GCATC 5 cut(s) 1169, 1173, 1677, 1926, 2277
SfcI CTRYAG 2 cut(s) 1715, 2043
Sfr274I CTCGAG 1 cut(s) 1757
Sfr303I CCGCGG 1 cut(s) 1586
SfuI TTCGAA 1 cut(s) 542
SgrBI CCGCGG 1 cut(s) 1586
SinI GGWCC 4 cut(s) 742, 911, 2054, 2311
SlaI CTCGAG 1 cut(s) 1757
SmiMI CAYNNNNRTG 4 cut(s) 16, 164, 1896, 2108
SmlI CTYRAG 5 cut(s) 356, 1019, 1079, 1600, 1757
SmoI CTYRAG 5 cut(s) 356, 1019, 1079, 1600, 1757
SseBI AGGCCT 1 cut(s) 1362
StuI AGGCCT 1 cut(s) 1362
StyD4I CCNGG 3 cut(s) 1388, 2056, 2467
StyI CCWWGG 2 cut(s) 1172, 2280
TaaI ACNGT 5 cut(s) 412, 952, 1060, 1865, 2355
TaiI ACGT 2 cut(s) 70, 181
TaqI TCGA 7 cut(s) 35, 252, 542, 1758, 1788, 2166, 2174
TatI WGTACW 2 cut(s) 2016, 2094
TauI GCSGC 4 cut(s) 687, 1087, 2268, 2582
TfiI GAWTC 4 cut(s) 988, 2048, 2143, 2197
TscAI CASTG 5 cut(s) 1057, 1065, 1144, 2358, 2650
TseFI GTSAC 4 cut(s) 63, 651, 2446, 2629
TseI GCWGC 3 cut(s) 188, 191, 2359
Tsp45I GTSAC 4 cut(s) 63, 651, 2446, 2629
TspGWI ACGGA 2 cut(s) 1287, 2022
TspRI CASTG 5 cut(s) 1057, 1065, 1144, 2358, 2650
Tth111I GACNNNGTC 1 cut(s) 248
Vha464I CTTAAG 2 cut(s) 1079, 1600
VpaK11BI GGWCC 4 cut(s) 742, 911, 2054, 2311
VspI ATTAAT 1 cut(s) 612
XbaI TCTAGA 2 cut(s) 955, 2002
XceI RCATGY 2 cut(s) 169, 691
XcmI CCANNNNNNNNNTGG 2 cut(s) 1098, 1299
XhoI CTCGAG 1 cut(s) 1757
XmnI GAANNNNTTC 1 cut(s) 758
ZrmI AGTACT 1 cut(s) 2096
Zsp2I ATGCAT 1 cut(s) 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.