Leucine rich repeat N-terminal domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRRNT_2 | PF08263 | 36 - 90 | 1.5e-08 | Leucine rich repeat N-terminal domain |
| LRR_14 | PF23598 | 112 - 227 | 6.1e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 245 - 428 | 4.5e-08 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 247 - 330 | 2.7e-06 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 347 - 537 | 1.2e-09 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 354 - 413 | 6.9e-06 | Leucine rich repeat |
| LRR_4 | PF12799 | 377 - 417 | 4.7e-06 | Leucine Rich repeats (2 copies) |
| LRR_8 | PF13855 | 402 - 461 | 1.5e-08 | Leucine rich repeat |
| LRR_8 | PF13855 | 475 - 536 | 8.6e-06 | Leucine rich repeat |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1358 |
| Acc36I | ACCTGC | 1 cut(s) | 871 |
| AccII | CGCG | 1 cut(s) | 1005 |
| AccIII | TCCGGA | 1 cut(s) | 1471 |
| AciI | CCGC | 3 cut(s) | 1003, 1005, 1017 |
| AclWI | GGATC | 4 cut(s) | 13, 170, 218, 1512 |
| AcoI | YGGCCR | 3 cut(s) | 280, 1018, 1534 |
| AcsI | RAATTY | 7 cut(s) | 483, 495, 829, 892, 1382, 1475, 1558 |
| AcuI | CTGAAG | 1 cut(s) | 379 |
| AfaI | GTAC | 4 cut(s) | 649, 750, 1009, 1437 |
| AfeI | AGCGCT | 1 cut(s) | 119 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1041 |
| AflII | CTTAAG | 2 cut(s) | 1093, 1150 |
| AflIII | ACRYGT | 1 cut(s) | 1674 |
| AhlI | ACTAGT | 1 cut(s) | 437 |
| AjnI | CCWGG | 2 cut(s) | 416, 1034 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1247, 1279 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 564, 596 |
| Alw26I | GTCTC | 1 cut(s) | 870 |
| AlwI | GGATC | 4 cut(s) | 13, 170, 218, 1512 |
| Aor13HI | TCCGGA | 1 cut(s) | 1471 |
| Aor51HI | AGCGCT | 1 cut(s) | 119 |
| AoxI | GGCC | 8 cut(s) | 280, 292, 424, 561, 759, 1018, 1534, 1640 |
| ApeKI | GCWGC | 5 cut(s) | 65, 267, 309, 604, 810 |
| ApoI | RAATTY | 7 cut(s) | 483, 495, 829, 892, 1382, 1475, 1558 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1156, 1188 |
| AseI | ATTAAT | 1 cut(s) | 60 |
| AspLEI | GCGC | 2 cut(s) | 120, 1359 |
| AsuHPI | GGTGA | 1 cut(s) | 667 |
| AsuII | TTCGAA | 1 cut(s) | 1347 |
| AsuNHI | GCTAGC | 1 cut(s) | 305 |
| BalI | TGGCCA | 2 cut(s) | 282, 1536 |
| BbsI | GAAGAC | 3 cut(s) | 459, 525, 657 |
| BbvI | GCAGC | 5 cut(s) | 52, 279, 321, 616, 822 |
| BccI | CCATC | 4 cut(s) | 248, 421, 496, 943 |
| BciT130I | CCWGG | 2 cut(s) | 418, 1036 |
| BcoDI | GTCTC | 1 cut(s) | 870 |
| BcuI | ACTAGT | 1 cut(s) | 437 |
| BfmI | CTRYAG | 1 cut(s) | 1499 |
| BfoI | RGCGCY | 1 cut(s) | 121 |
| BfrI | CTTAAG | 2 cut(s) | 1093, 1150 |
| BfuAI | ACCTGC | 1 cut(s) | 871 |
| BglII | AGATCT | 2 cut(s) | 1276, 1510 |
| BisI | GCNGC | 6 cut(s) | 66, 268, 310, 605, 811, 1018 |
| BlsI | GCNGC | 6 cut(s) | 67, 269, 311, 606, 812, 1019 |
| BmcAI | AGTACT | 2 cut(s) | 750, 1437 |
| Bme1390I | CCNGG | 2 cut(s) | 418, 1036 |
| BmiI | GGNNCC | 1 cut(s) | 634 |
| BmrFI | CCNGG | 2 cut(s) | 418, 1036 |
| BmsI | GCATC | 1 cut(s) | 209 |
| BmtI | GCTAGC | 1 cut(s) | 309 |
| BpiI | GAAGAC | 3 cut(s) | 459, 525, 657 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 617, 649 |
| Bpu14I | TTCGAA | 1 cut(s) | 1347 |
| BpuEI | CTTGAG | 1 cut(s) | 1330 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1509 |
| BsaI | GGTCTC | 1 cut(s) | 870 |
| BsaJI | CCNNGG | 4 cut(s) | 816, 1003, 1189, 1637 |
| BsaWI | WCCGGW | 1 cut(s) | 1471 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 226, 256 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1041 |
| Bse1I | ACTGG | 5 cut(s) | 843, 1174, 1408, 1615, 1628 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1509 |
| BseAI | TCCGGA | 1 cut(s) | 1471 |
| BseBI | CCWGG | 2 cut(s) | 418, 1036 |
| BseDI | CCNNGG | 4 cut(s) | 816, 1003, 1189, 1637 |
| BseGI | GGATG | 6 cut(s) | 8, 259, 413, 698, 1336, 1557 |
| BseJI | GATNNNNATC | 1 cut(s) | 1509 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1041 |
| BseMII | CTCAG | 1 cut(s) | 1658 |
| BseNI | ACTGG | 5 cut(s) | 843, 1174, 1408, 1615, 1628 |
| BseXI | GCAGC | 5 cut(s) | 52, 279, 321, 616, 822 |
| BseYI | CCCAGC | 1 cut(s) | 957 |
| BsgI | GTGCAG | 1 cut(s) | 1412 |
| Bsh1236I | CGCG | 1 cut(s) | 1005 |
| BshFI | GGCC | 8 cut(s) | 282, 294, 426, 563, 761, 1020, 1536, 1642 |
| BsiSI | CCGG | 1 cut(s) | 1472 |
| BslFI | GGGAC | 1 cut(s) | 1060 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1041 |
| BsmAI | GTCTC | 1 cut(s) | 870 |
| BsmFI | GGGAC | 1 cut(s) | 1060 |
| BsmI | GAATGC | 1 cut(s) | 269 |
| BsnI | GGCC | 8 cut(s) | 282, 294, 426, 563, 761, 1020, 1536, 1642 |
| Bso31I | GGTCTC | 1 cut(s) | 870 |
| Bsp119I | TTCGAA | 1 cut(s) | 1347 |
| Bsp13I | TCCGGA | 1 cut(s) | 1471 |
| Bsp19I | CCATGG | 1 cut(s) | 1637 |
| BspACI | CCGC | 3 cut(s) | 1003, 1005, 1017 |
| BspANI | GGCC | 8 cut(s) | 282, 294, 426, 563, 761, 1020, 1536, 1642 |
| BspCNI | CTCAG | 1 cut(s) | 1657 |
| BspEI | TCCGGA | 1 cut(s) | 1471 |
| BspFNI | CGCG | 1 cut(s) | 1005 |
| BspLI | GGNNCC | 1 cut(s) | 634 |
| BspMAI | CTGCAG | 1 cut(s) | 1503 |
| BspMI | ACCTGC | 1 cut(s) | 871 |
| BspOI | GCTAGC | 1 cut(s) | 309 |
| BspPI | GGATC | 4 cut(s) | 13, 170, 218, 1512 |
| BspT104I | TTCGAA | 1 cut(s) | 1347 |
| BspTI | CTTAAG | 2 cut(s) | 1093, 1150 |
| BspTNI | GGTCTC | 1 cut(s) | 870 |
| BsrI | ACTGG | 5 cut(s) | 843, 1174, 1408, 1615, 1628 |
| BssECI | CCNNGG | 4 cut(s) | 816, 1003, 1189, 1637 |
| BssT1I | CCWWGG | 3 cut(s) | 816, 1189, 1637 |
| Bst2UI | CCWGG | 2 cut(s) | 418, 1036 |
| Bst4CI | ACNGT | 3 cut(s) | 640, 782, 914 |
| BstAFI | CTTAAG | 2 cut(s) | 1093, 1150 |
| BstBI | TTCGAA | 1 cut(s) | 1347 |
| BstC8I | GCNNGC | 2 cut(s) | 70, 307 |
| BstDEI | CTNAG | 3 cut(s) | 614, 1271, 1644 |
| BstDSI | CCRYGG | 2 cut(s) | 1003, 1637 |
| BstF5I | GGATG | 6 cut(s) | 8, 259, 413, 698, 1336, 1557 |
| BstFNI | CGCG | 1 cut(s) | 1005 |
| BstH2I | RGCGCY | 1 cut(s) | 121 |
| BstHHI | GCGC | 2 cut(s) | 120, 1359 |
| BstMAI | GTCTC | 1 cut(s) | 870 |
| BstNI | CCWGG | 2 cut(s) | 418, 1036 |
| BstNSI | RCATGY | 2 cut(s) | 72, 1678 |
| BstSCI | CCNGG | 2 cut(s) | 416, 1034 |
| BstSFI | CTRYAG | 1 cut(s) | 1499 |
| BstUI | CGCG | 1 cut(s) | 1005 |
| BstV1I | GCAGC | 5 cut(s) | 52, 279, 321, 616, 822 |
| BstV2I | GAAGAC | 3 cut(s) | 459, 525, 657 |
| BstX2I | RGATCY | 5 cut(s) | 175, 223, 1276, 1504, 1510 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 278, 290, 1610 |
| BstYI | RGATCY | 5 cut(s) | 175, 223, 1276, 1504, 1510 |
| BsuRI | GGCC | 8 cut(s) | 282, 294, 426, 563, 761, 1020, 1536, 1642 |
| BtgI | CCRYGG | 2 cut(s) | 1003, 1637 |
| BtsCI | GGATG | 6 cut(s) | 8, 259, 413, 698, 1336, 1557 |
| BtsIMutI | CAGTG | 1 cut(s) | 645 |
| BveI | ACCTGC | 1 cut(s) | 871 |
| Cac8I | GCNNGC | 2 cut(s) | 70, 307 |
| CfoI | GCGC | 2 cut(s) | 120, 1359 |
| Cfr42I | CCGCGG | 1 cut(s) | 1006 |
| CseI | GACGC | 2 cut(s) | 100, 1138 |
| Csp6I | GTAC | 4 cut(s) | 648, 749, 1008, 1436 |
| CviQI | GTAC | 4 cut(s) | 648, 749, 1008, 1436 |
| DdeI | CTNAG | 3 cut(s) | 614, 1271, 1644 |
| EaeI | YGGCCR | 3 cut(s) | 280, 1018, 1534 |
| Eco130I | CCWWGG | 3 cut(s) | 816, 1189, 1637 |
| Eco31I | GGTCTC | 1 cut(s) | 870 |
| Eco47III | AGCGCT | 1 cut(s) | 119 |
| Eco57I | CTGAAG | 1 cut(s) | 379 |
| EcoRII | CCWGG | 2 cut(s) | 416, 1034 |
| EcoT14I | CCWWGG | 3 cut(s) | 816, 1189, 1637 |
| EcoT22I | ATGCAT | 1 cut(s) | 36 |
| ErhI | CCWWGG | 3 cut(s) | 816, 1189, 1637 |
| FaqI | GGGAC | 1 cut(s) | 1060 |
| Fnu4HI | GCNGC | 6 cut(s) | 66, 268, 310, 605, 811, 1018 |
| FokI | GGATG | 5 cut(s) | 266, 400, 705, 1343, 1564 |
| Fsp4HI | GCNGC | 6 cut(s) | 66, 268, 310, 605, 811, 1018 |
| FspI | TGCGCA | 1 cut(s) | 1358 |
| GlaI | GCGC | 2 cut(s) | 119, 1358 |
| GluI | GCNGC | 6 cut(s) | 66, 268, 310, 605, 811, 1018 |
| GsaI | CCCAGC | 1 cut(s) | 961 |
| HaeII | RGCGCY | 1 cut(s) | 121 |
| HaeIII | GGCC | 8 cut(s) | 282, 294, 426, 563, 761, 1020, 1536, 1642 |
| HapII | CCGG | 1 cut(s) | 1472 |
| HgaI | GACGC | 2 cut(s) | 100, 1138 |
| HhaI | GCGC | 2 cut(s) | 120, 1359 |
| Hin6I | GCGC | 2 cut(s) | 118, 1357 |
| HinP1I | GCGC | 2 cut(s) | 118, 1357 |
| HincII | GTYRAC | 1 cut(s) | 1200 |
| HindII | GTYRAC | 1 cut(s) | 1200 |
| HindIII | AAGCTT | 2 cut(s) | 1268, 1427 |
| HinfI | GANTC | 5 cut(s) | 275, 1031, 1227, 1249, 1667 |
| HpaII | CCGG | 1 cut(s) | 1472 |
| HphI | GGTGA | 1 cut(s) | 667 |
| Hpy166II | GTNNAC | 2 cut(s) | 1200, 1496 |
| Hpy188I | TCNGA | 5 cut(s) | 192, 385, 875, 1128, 1519 |
| Hpy188III | TCNNGA | 8 cut(s) | 477, 492, 625, 791, 1280, 1472, 1508, 1619 |
| Hpy8I | GTNNAC | 2 cut(s) | 1200, 1496 |
| HpyAV | CCTTC | 5 cut(s) | 212, 692, 713, 890, 1001 |
| HpyCH4III | ACNGT | 3 cut(s) | 640, 782, 914 |
| HpyCH4IV | ACGT | 1 cut(s) | 1221 |
| HpyF3I | CTNAG | 3 cut(s) | 614, 1271, 1644 |
| HpySE526I | ACGT | 1 cut(s) | 1221 |
| HspAI | GCGC | 2 cut(s) | 118, 1357 |
| Kpn2I | TCCGGA | 1 cut(s) | 1471 |
| KspI | CCGCGG | 1 cut(s) | 1006 |
| LmnI | GCTCC | 2 cut(s) | 638, 1426 |
| Lsp1109I | GCAGC | 5 cut(s) | 52, 279, 321, 616, 822 |
| LweI | GCATC | 1 cut(s) | 209 |
| MaeII | ACGT | 1 cut(s) | 1221 |
| MaeIII | GTNAC | 5 cut(s) | 539, 695, 782, 1024, 1257 |
| MboII | GAAGA | 6 cut(s) | 308, 459, 525, 657, 930, 1520 |
| MfeI | CAATTG | 1 cut(s) | 362 |
| MflI | RGATCY | 5 cut(s) | 175, 223, 1276, 1504, 1510 |
| MlsI | TGGCCA | 2 cut(s) | 282, 1536 |
| MluNI | TGGCCA | 2 cut(s) | 282, 1536 |
| MlyI | GAGTC | 2 cut(s) | 269, 1661 |
| MmeI | TCCRAC | 3 cut(s) | 972, 1023, 1027 |
| MnlI | CCTC | 9 cut(s) | 237, 311, 363, 389, 683, 697, 1304, 1601, 1653 |
| Mox20I | TGGCCA | 2 cut(s) | 282, 1536 |
| Mph1103I | ATGCAT | 1 cut(s) | 36 |
| MroI | TCCGGA | 1 cut(s) | 1471 |
| MscI | TGGCCA | 2 cut(s) | 282, 1536 |
| MslI | CAYNNNNRTG | 3 cut(s) | 13, 111, 615 |
| Msp20I | TGGCCA | 2 cut(s) | 282, 1536 |
| MspA1I | CMGCKG | 2 cut(s) | 1005, 1017 |
| MspCI | CTTAAG | 2 cut(s) | 1093, 1150 |
| MspI | CCGG | 1 cut(s) | 1472 |
| MspR9I | CCNGG | 2 cut(s) | 418, 1036 |
| MunI | CAATTG | 1 cut(s) | 362 |
| Mva1269I | GAATGC | 1 cut(s) | 269 |
| MvaI | CCWGG | 2 cut(s) | 418, 1036 |
| MvnI | CGCG | 1 cut(s) | 1005 |
| NcoI | CCATGG | 1 cut(s) | 1637 |
| NheI | GCTAGC | 1 cut(s) | 305 |
| NlaIV | GGNNCC | 1 cut(s) | 634 |
| NmuCI | GTSAC | 2 cut(s) | 695, 1257 |
| NsbI | TGCGCA | 1 cut(s) | 1358 |
| NsiI | ATGCAT | 1 cut(s) | 36 |
| NspI | RCATGY | 2 cut(s) | 72, 1678 |
| NspV | TTCGAA | 1 cut(s) | 1347 |
| PaeI | GCATGC | 1 cut(s) | 72 |
| PciI | ACATGT | 1 cut(s) | 1674 |
| PctI | GAATGC | 1 cut(s) | 269 |
| PfeI | GAWTC | 3 cut(s) | 1031, 1227, 1249 |
| PkrI | GCNGC | 6 cut(s) | 67, 269, 311, 606, 812, 1019 |
| PleI | GAGTC | 2 cut(s) | 269, 1661 |
| PpsI | GAGTC | 2 cut(s) | 269, 1661 |
| PscI | ACATGT | 1 cut(s) | 1674 |
| PshBI | ATTAAT | 1 cut(s) | 60 |
| Psp6I | CCWGG | 2 cut(s) | 416, 1034 |
| PspFI | CCCAGC | 1 cut(s) | 957 |
| PspGI | CCWGG | 2 cut(s) | 416, 1034 |
| PspN4I | GGNNCC | 1 cut(s) | 634 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 229, 261, 893, 925 |
| PstI | CTGCAG | 1 cut(s) | 1503 |
| PsuI | RGATCY | 5 cut(s) | 175, 223, 1276, 1504, 1510 |
| RsaI | GTAC | 4 cut(s) | 649, 750, 1009, 1437 |
| RsaNI | GTAC | 4 cut(s) | 648, 749, 1008, 1436 |
| RseI | CAYNNNNRTG | 3 cut(s) | 13, 111, 615 |
| SacII | CCGCGG | 1 cut(s) | 1006 |
| SatI | GCNGC | 6 cut(s) | 66, 268, 310, 605, 811, 1018 |
| ScaI | AGTACT | 2 cut(s) | 750, 1437 |
| SchI | GAGTC | 2 cut(s) | 269, 1661 |
| ScrFI | CCNGG | 2 cut(s) | 418, 1036 |
| SfaNI | GCATC | 1 cut(s) | 209 |
| SfcI | CTRYAG | 1 cut(s) | 1499 |
| Sfr303I | CCGCGG | 1 cut(s) | 1006 |
| SfuI | TTCGAA | 1 cut(s) | 1347 |
| SgrBI | CCGCGG | 1 cut(s) | 1006 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 13, 111, 615 |
| SmlI | CTYRAG | 3 cut(s) | 1093, 1150, 1309 |
| SmoI | CTYRAG | 3 cut(s) | 1093, 1150, 1309 |
| SpeI | ACTAGT | 1 cut(s) | 437 |
| SphI | GCATGC | 1 cut(s) | 72 |
| SsiI | CCGC | 3 cut(s) | 1003, 1005, 1017 |
| StyD4I | CCNGG | 2 cut(s) | 416, 1034 |
| StyI | CCWWGG | 3 cut(s) | 816, 1189, 1637 |
| TaaI | ACNGT | 3 cut(s) | 640, 782, 914 |
| TaiI | ACGT | 1 cut(s) | 1224 |
| TaqI | TCGA | 3 cut(s) | 624, 1083, 1347 |
| TatI | WGTACW | 3 cut(s) | 647, 748, 1435 |
| TauI | GCSGC | 1 cut(s) | 1020 |
| TfiI | GAWTC | 3 cut(s) | 1031, 1227, 1249 |
| TscAI | CASTG | 1 cut(s) | 645 |
| TseFI | GTSAC | 2 cut(s) | 695, 1257 |
| TseI | GCWGC | 5 cut(s) | 65, 267, 309, 604, 810 |
| Tsp45I | GTSAC | 2 cut(s) | 695, 1257 |
| TspDTI | ATGAA | 9 cut(s) | 237, 308, 459, 489, 599, 1203, 1355, 1440, 1520 |
| TspRI | CASTG | 1 cut(s) | 645 |
| Vha464I | CTTAAG | 2 cut(s) | 1093, 1150 |
| VspI | ATTAAT | 1 cut(s) | 60 |
| XapI | RAATTY | 7 cut(s) | 483, 495, 829, 892, 1382, 1475, 1558 |
| XbaI | TCTAGA | 1 cut(s) | 1507 |
| XceI | RCATGY | 2 cut(s) | 72, 1678 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1551, 1635 |
| ZrmI | AGTACT | 2 cut(s) | 750, 1437 |
| Zsp2I | ATGCAT | 1 cut(s) | 36 |