RchiOBHm_Chr2g0156411

Leucine rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000024
Physical Location & Seq
Forward (+)
73043289 .. 73048634
5346 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52519

Sequence Viewer

Length: 3006 bp
ATGGGGCTTGGGTGGTTTTGGAAATCATGGAGAGATGGAGTGATGGACTTAGAGACGCAGAAACTTTGCCAGGATGATGAGCGCTCTGCCTTGTTGCAATTCAAAGCTAGTTTCACTATAGACAAGTCTGTTTCCCAAGATCCCTTTGCTTATCCTAAAGTTGCATCCTGGGGTAGGCTAGAAGGAGATCCTCAAAGGAGTAACTGTTGTTCATGGGATGGTGTTGAATGCAACGACGTATCTGGCCATGTTATTGGTCTTGACCTTGCCAGCAGCTATCTTCATGGTTCCATCAACTCCAATAGCAGTCTTTTTCAACTTGTTCAGTTGCAGAGGCTTGACCTCTCTGACAATAACTTTAGCTTCTCTCAAATACCATCCAGATTAGGCAATGATCTTACTAGTCTAACATATCTCAACCTTTCAATGTCTTCATTTTCTGGCCAAATTCCATCAGAAATTTCATATCTATCCAAGCTGTCTGCCCTTGATCTGACTTCTGATTATATGTTGGCACTTGAAAAGGCCAACTTCAGAAGTCTAATTCAAAATTTAACAGACATAAAACAGCTTCATCTTAGTAAGGTCTCTATACTCTCCTCAGTGCCTAATACACTGGTGAATATGTCTTCTCTCACATCTCTCCGTCTTCAAGCATGTAACTTGGAGGGAGAATTCCCAGTAGGCATTTTCCACCTACCAAACTTGCAAGTACTTGATTTGGCCTATAACGATAATCTTACCGGTTATTTTCCTGATTACCTTAACAGGAGCAGTCCCTTGAAGATATTGAATTTGCAGTCAACCAATTTCTCTGGTCATCTACCTGCTTCAATCGGAGACCTAAATGCCTTAAATTTGTTGAACATTTCATCCTGTCACTTTTATCCCCATGTTCCATCTTCACTTTCCAACCTTACCCAGCTCAATTTCCTAGATCTTTCTTCCTTTTATGACTATAGTTATCAACCTGACCTTCCAACAATCCATACTTTCGGTGGCCAAGTTTCAAATTCCTGGTCTTGGGTTGGAAAGCTGACAAATCTCAACCACTTGGTCCTTGTGGATACCAACTTAAGGGGAGATTTGCCATGTTCTTTGGCAAATCTGACTCAACTTTTGGAATTAGACTTGAGCCAGAATCACATAACAGGTGAAATCCCATGTTGTTTGGCTCATCTGACACAACTTTTCAAATTAGACTTGGGCCACAATCAAATAACTGGTCAAATCCCATCTTGCCTTATGCTTTTGACCCAATTAACTTTGTTAGATGTACGATTCAACAATCTCCAAGGAGCAATTCCCAGGTCACTGTTACAGCTTAAAAGTCTTGAATATATTTTCCTCAACTCAAATAACTTGAGTGGATATGTTCAATTCGATGAGTTTTCCAAGCTCAAAAGGTTGAGGGGACTTCGTTTGTCGCTCAACAAGTTATCTGTGCAGATCAAAACTGGATTTACTGCTATTCTTCCAAAGCTTAATTTACTAGAATTGGGTTCATGCAACTTGACAGAGTTTCCGGAATTTTTGAAATTCAGTAGTGAACTGATGCATCTAGATCTATCTGACAACAATCTTCATGGCCAAATACCAAAATGGATGTGGAATTCAACTAGTGAAACGTTGAGATACCTCAACCTCTCTCACAACCACTTAACTGGATTTGAAGAAAATTCGATCATGATTCCATGGCATCGGTTAAGCTCTTTACAGCTAGACTCTAACATGTTACGAGGATCACTGCCAATTCCAGGGCTGTCAATGGCAGTCTATTCTGTTTCAAACAATGAATATGAAGGAGAAATTCCAGCAACATTCTGTAATGCGGGGACGCTAACTATTCTTGATTTGTCTAACAACAACCTGAATGGCATGATTCCTCAATGTTTTGAGAATTTCGGAGCTCTTCAGATATTGAAACTGCGGAACAATTCTTTTCACGGAGATATTCCTCAAATATGTTCAAACAGATGTACGGAGTTGGCAGCGATTGACTTGAGTTATAATCAGCTACAAGGGAAGCTACCAAGATCAATTGCTAATTGTCCTCAGTTGATGTTTCTTAATTTGGGAAATAATCAGATCAGTGATACCTTCCCCTCTTGGTTAGGAGTGCTTCAACAGTTAAAAATTCTCATTTTGCGGTCCAATATATTTCATGGCATAATTGGAAAGCCTGCAAGTAGCCATGAGTTCCCTAAGCTGTCCATCATTGATTTATCTAGCAATGATTTTTCAGGTCTGTTGCCCTCCAACTACTTAGAGAACTGGAATGCCATGAAATTTGTTGATGAAAACGAGCAAATATACGTCCAATCCGCTGTCATCTTCGGGATGTATCCAGACACGTTCCACTATGATTACCCGATTACAGTTTTTAGCAAAGGTATTCAATTGAAGTATTTCAAGACCCCTTATCTTCTGAGACTCATAGACCTCTCAAGTAACAAATTTGAAGGAGAGATTCCAGGTATCATTGGGAATCTAACAGGGCTTCATTTGCTCAATCTTTGCAACAACACTCTCACTGGTCCCATCCCCTCATCTTTGGGGAACTTGACTGCTCTTGAATCATTGGATCTCTCCCTAAATCAGCTCTCAGGAAAGATCCCCGGTGATCTAGCACAACTGACATTCCTTGCATACTTCAATGTATCCCACAATCGTCTCTATGGTTCAATCCCACAAGGTCGACAGTTTGATACATTCCAAGAGGATATGTACCGAGGAAACTCAGGTTTGTGTGGAAAACCTTTGTCAAAGAAATGTGAGGATTCTGAGAGCGCAACACCACAAACAAACTTTCAACAAGACCAAGACTCTGGGTTTCAAATTGAGCTAGATTGGTTTGTGGTGCTGCCAGGAGTTGTTACTGGTCTAATAGTTGGAGTGGTTGGGGAAAACTTTTGGACAGCCAAGAAGCATGATTGGTTTATAAAGGCATTCAGCAGGAGGAGGGAGCCGAGAAGCACAAGGCGGAGGAGGGGACTCAGAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

1001

Amino Acids

112.2

Weight (kDa)

5.85

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 25 - 78 5.4e-08 Leucine rich repeat N-terminal domain
LRR_14 PF23598 99 - 218 1.5e-06 Leucine-rich repeat region
LRR_14 PF23598 234 - 316 1.4e-08 Leucine-rich repeat region
LRR_8 PF13855 348 - 407 3.1e-07 Leucine rich repeat
LRR_14 PF23598 387 - 554 1.5e-08 Leucine-rich repeat region
LRR_8 PF13855 420 - 480 8.9e-06 Leucine rich repeat
LRR_8 PF13855 605 - 647 7e-06 Leucine rich repeat
LRR_8 PF13855 638 - 697 1.7e-07 Leucine rich repeat
LRR_8 PF13855 833 - 892 2.5e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000024)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45616 AT1G47890 AT2G25440 AT2G32660 AT2G32660 AT2G32680 AT2G33020 AT2G33030 AT2G33050 AT2G33060 AT2G33080 AT3G24900 AT3G24900 AT3G24982 AT3G25010 AT3G25010 AT3G25020 AT4G13810 AT4G13810 AT4G13810 AT4G13820 AT4G13880 AT4G13920 AT5G40170
fragaria_vesca FvH4_2g05950 FvH4_3g24110 FvH4_5g04000 FvH4_6g04890 FvH4_6g31760 FvH4_6g40760 FvH4_6g40800 FvH4_6g40820 FvH4_6g40840 FvH4_6g40842 FvH4_6g40843 FvH4_6g40847 FvH4_7g06093 FvH4_7g10111 FvH4_7g10112 FvH4_7g10113 FvH4_7g10114 FvH4_7g10130 FvH4_7g10150 FvH4_7g31280
malus_domestica MD00G1164200.v1.1 MD00G1164300.v1.1 MD01G1109000.v1.1 MD01G1109100.v1.1 MD07G1068900.v1.1 MD07G1069000.v1.1 MD07G1069300.v1.1 MD07G1069600.v1.1 MD07G1106700.v1.1 MD07G1106900.v1.1 MD07G1107200.v1.1 MD07G1107300.v1.1 MD07G1107400.v1.1 MD07G1107800.v1.1 MD09G1124300.v1.1 MD09G1124700.v1.1 MD09G1124800.v1.1 MD09G1124900.v1.1 MD09G1125100.v1.1 MD09G1125300.v1.1 MD09G1125400.v1.1 MD09G1125500.v1.1 MD09G1125600.v1.1 MD09G1130600.v1.1 MD09G1130900.v1.1 MD09G1131100.v1.1 MD17G1115000.v1.1 MD17G1115100.v1.1 MD17G1115300.v1.1 MD17G1115500.v1.1
prunus_persica Prupe.2G128400_v2.0.a1 Prupe.2G128600_v2.0.a1 Prupe.2G128700_v2.0.a1 Prupe.2G130100_v2.0.a1 Prupe.2G130300_v2.0.a1 Prupe.2G130400_v2.0.a1 Prupe.2G130500_v2.0.a1 Prupe.2G130600_v2.0.a1 Prupe.2G130700_v2.0.a1 Prupe.2G130900_v2.0.a1 Prupe.2G131000_v2.0.a1 Prupe.3G094800_v2.0.a1 Prupe.3G094900_v2.0.a1 Prupe.3G195900_v2.0.a1 Prupe.3G196000_v2.0.a1 Prupe.3G196000_v2.0.a1 Prupe.3G199200_v2.0.a1 Prupe.3G199200_v2.0.a1 Prupe.3G199400_v2.0.a1 Prupe.3G199500_v2.0.a1 Prupe.3G199900_v2.0.a1 Prupe.3G200000_v2.0.a1 Prupe.4G168900_v2.0.a1 Prupe.4G232400_v2.0.a1 Prupe.4G233100_v2.0.a1 Prupe.4G233100_v2.0.a1 Prupe.4G233200_v2.0.a1 Prupe.4G233600_v2.0.a1 Prupe.4G234000_v2.0.a1 Prupe.4G234200_v2.0.a1 Prupe.4G279000_v2.0.a1 Prupe.4G279000_v2.0.a1
pyrus_communis pycom01g13640 pycom05g05290 pycom05g05300 pycom05g05310 pycom05g05320 pycom07g05310 pycom07g05920 pycom07g09130 pycom07g09160 pycom07g09190 pycom07g09210 pycom09g04810 pycom09g04820 pycom09g04850 pycom09g04860 pycom09g04870 pycom09g04930 pycom09g04940 pycom09g04960 pycom09g04980 pycom11g17040 pycom11g17080 pycom11g17100 pycom17g10620 pycom17g10640 pycom17g10650 pycom17g10660
rosa_chinensis RchiOBHm_Chr1g0340311 RchiOBHm_Chr1g0340341 RchiOBHm_Chr1g0340351 RchiOBHm_Chr1g0340361 RchiOBHm_Chr1g0340411 RchiOBHm_Chr1g0340481 RchiOBHm_Chr1g0340521 RchiOBHm_Chr1g0340591 RchiOBHm_Chr1g0340631 RchiOBHm_Chr1g0340681 RchiOBHm_Chr1g0344431 RchiOBHm_Chr1g0346361 RchiOBHm_Chr1g0347011 RchiOBHm_Chr1g0347021 RchiOBHm_Chr1g0347031 RchiOBHm_Chr1g0347041 RchiOBHm_Chr1g0347561 RchiOBHm_Chr1g0347571 RchiOBHm_Chr1g0347811 RchiOBHm_Chr1g0347841 RchiOBHm_Chr1g0347861 RchiOBHm_Chr1g0348951 RchiOBHm_Chr1g0357511 RchiOBHm_Chr1g0367531 RchiOBHm_Chr1g0368411 RchiOBHm_Chr2g0154781 RchiOBHm_Chr2g0154841 RchiOBHm_Chr2g0155021 RchiOBHm_Chr2g0155091 RchiOBHm_Chr2g0155101 RchiOBHm_Chr2g0156211 RchiOBHm_Chr2g0156251 RchiOBHm_Chr2g0156281 RchiOBHm_Chr2g0156371 RchiOBHm_Chr2g0156381 RchiOBHm_Chr2g0156411 RchiOBHm_Chr2g0173751 RchiOBHm_Chr3g0494931 RchiOBHm_Chr4g0385161 RchiOBHm_Chr4g0385171 RchiOBHm_Chr4g0408231 RchiOBHm_Chr4g0408241 RchiOBHm_Chr5g0005251 RchiOBHm_Chr5g0030911 RchiOBHm_Chr5g0042831 RchiOBHm_Chr5g0042871 RchiOBHm_Chr5g0042881 RchiOBHm_Chr5g0043081 RchiOBHm_Chr5g0043131 RchiOBHm_Chr5g0043361 RchiOBHm_Chr5g0043371 RchiOBHm_Chr5g0043381 RchiOBHm_Chr5g0083391 RchiOBHm_Chr5g0083401 RchiOBHm_Chr5g0083441 RchiOBHm_Chr5g0083451 RchiOBHm_Chr5g0083461 RchiOBHm_Chr5g0083471 RchiOBHm_Chr5g0083501 RchiOBHm_Chr5g0083531 RchiOBHm_Chr5g0083601 RchiOBHm_Chr5g0083611 RchiOBHm_Chr5g0083651 RchiOBHm_Chr6g0257441 RchiOBHm_Chr6g0257601 RchiOBHm_Chr6g0257621 RchiOBHm_Chr6g0257631 RchiOBHm_Chr6g0263371 RchiOBHm_Chr6g0263391 RchiOBHm_Chr6g0263401 RchiOBHm_Chr6g0263411
rosa_laevigata RLG00000003361 RLG00000008615 RLG00000010252 RLG00000014349 RLG00000014351 RLG00000014359 RLG00000014696 RLG00000014706 RLG00000014711 RLG00000014712 RLG00000018865 RLG00000020803 RLG00000020804 RLG00000020808 RLG00000020811 RLG00000020812 RLG00000020816 RLG00000020817 RLG00000020818 RLG00000020896 RLG00000020902 RLG00000020904 RLG00000020905 RLG00000020906 RLG00000020907 RLG00000020908 RLG00000020909 RLG00000020910 RLG00000022216 RLG00000022218 RLG00000027211 RLG00000027212 RLG00000027213 RLG00000027214 RLG00000028474 RLG00000028475 RLG00000028613 RLG00000028708 RLG00000028709 RLG00000028737 RLG00000028738 RLG00000028764 RLG00000029010 RLG00000029012 RLG00000029019 RLG00000029022 RLG00000029025 RLG00000029027 RLG00000029031 RLG00000029035 RLG00000029141 RLG00000030130 RLG00000033005 RLG00000033271 RLG00000034150 RLG00000034153 RLG00000034158 RLG00000034160 RLG00000034164 RLG00000034166 RLG00000034167 RLG00000034183 RLG00000037034 RLG00000037035
rosa_multiflora Rmu_co8046282.1_g000001 Rmu_co8137732.1_g000001 Rmu_co8267491.1_g000001 Rmu_co8329695.1_g000001 Rmu_co8330005.1_g000001 Rmu_co8351095.1_g000001 Rmu_co8357797.1_g000001 Rmu_co8424479.1_g000001 Rmu_co8425575.1_g000001 Rmu_co8485497.1_g000001 Rmu_sc0000060.1_g000020 Rmu_sc0000260.1_g000009 Rmu_sc0000565.1_g000006 Rmu_sc0000566.1_g000023 Rmu_sc0000566.1_g000025 Rmu_sc0000566.1_g000031 Rmu_sc0000566.1_g000033 Rmu_sc0000566.1_g000036 Rmu_sc0000566.1_g000045 Rmu_sc0000566.1_g000048 Rmu_sc0000698.1_g000009 Rmu_sc0000698.1_g000031 Rmu_sc0000820.1_g000049 Rmu_sc0001099.1_g000008 Rmu_sc0001167.1_g000009 Rmu_sc0001167.1_g000070 Rmu_sc0001205.1_g000014 Rmu_sc0001444.1_g000008 Rmu_sc0001836.1_g000017 Rmu_sc0001836.1_g000021 Rmu_sc0001836.1_g000065 Rmu_sc0001974.1_g000014 Rmu_sc0002048.1_g000006 Rmu_sc0002048.1_g000018 Rmu_sc0002048.1_g000034 Rmu_sc0002079.1_g000008 Rmu_sc0002079.1_g000012 Rmu_sc0002079.1_g000034 Rmu_sc0002161.1_g000018 Rmu_sc0002245.1_g000018 Rmu_sc0002245.1_g000040 Rmu_sc0002538.1_g000004 Rmu_sc0002595.1_g000003 Rmu_sc0002595.1_g000004 Rmu_sc0002709.1_g000027 Rmu_sc0002709.1_g000043 Rmu_sc0003086.1_g000004 Rmu_sc0003188.1_g000002 Rmu_sc0003188.1_g000003 Rmu_sc0003301.1_g000003 Rmu_sc0003522.1_g000040 Rmu_sc0003785.1_g000004 Rmu_sc0003918.1_g000002 Rmu_sc0003918.1_g000015 Rmu_sc0004325.1_g000017 Rmu_sc0004355.1_g000007 Rmu_sc0004976.1_g000006 Rmu_sc0004976.1_g000010 Rmu_sc0004976.1_g000024 Rmu_sc0005144.1_g000016 Rmu_sc0005167.1_g000002 Rmu_sc0005451.1_g000002 Rmu_sc0006217.1_g000004 Rmu_sc0006908.1_g000027 Rmu_sc0008148.1_g000016 Rmu_sc0008148.1_g000044 Rmu_sc0008148.1_g000047 Rmu_sc0008734.1_g000012 Rmu_sc0008734.1_g000017 Rmu_sc0010137.1_g000014 Rmu_sc0010308.1_g000003 Rmu_sc0010719.1_g000001 Rmu_sc0014922.1_g000001 Rmu_sc0020148.1_g000001 Rmu_sc0024761.1_g000002 Rmu_sc0024761.1_g000003 Rmu_sc0027638.1_g000002 Rmu_sc0030439.1_g000001 Rmu_sc0033559.1_g000001 Rmu_sc0036789.1_g000001 Rmu_ssc0000173.1_g000015 Rmu_ssc0000245.1_g000025 Rmu_ssc0000342.1_g000001
rosa_roxburghii Rroxscaffold_1G00000980 Rroxscaffold_1G00000990 Rroxscaffold_1G00001050 Rroxscaffold_1G00001070 Rroxscaffold_1G00037490 Rroxscaffold_1G00037600 Rroxscaffold_1G00037640 Rroxscaffold_1G00037680 Rroxscaffold_1G00037700 Rroxscaffold_1G00037720 Rroxscaffold_1G00037780 Rroxscaffold_1G00037810 Rroxscaffold_2G00078660 Rroxscaffold_2G00093050 Rroxscaffold_2G00093070 Rroxscaffold_2G00093120 Rroxscaffold_2G00093140 Rroxscaffold_2G00093950 Rroxscaffold_2G00093980 Rroxscaffold_2G00093990 Rroxscaffold_2G00094050 Rroxscaffold_2G00094080 Rroxscaffold_2G00125300 Rroxscaffold_3G00218210 Rroxscaffold_4G00288530 Rroxscaffold_4G00288580 Rroxscaffold_4G00306260 Rroxscaffold_4G00306350 Rroxscaffold_4G00306420 Rroxscaffold_4G00307420 Rroxscaffold_4G00307660 Rroxscaffold_4G00307690 Rroxscaffold_4G00307720 Rroxscaffold_4G00311180 Rroxscaffold_4G00311220 Rroxscaffold_4G00311240 Rroxscaffold_4G00315940 Rroxscaffold_4G00315950 Rroxscaffold_5G00333080 Rroxscaffold_7G00208670 Rroxscaffold_7G00208690 Rroxscaffold_7G00208700 Rroxscaffold_7G00208710 Rroxscaffold_7G00208830 Rroxscaffold_7G00208840 Rroxscaffold_7G00208860
rosa_rugosa Rorug01G0052800 Rorug01G0052900 Rorug01G0084800 Rorug01G0162300.1 Rorug01G0162600.1 Rorug01G0162700.1 Rorug01G0163100.1 Rorug01G0163300.1 Rorug01G0163800.1 Rorug01G0163900.1 Rorug01G0164200.1 Rorug01G0164400.1 Rorug01G0187700 Rorug01G0187800 Rorug01G0189400 Rorug01G0189500 Rorug01G0189600 Rorug01G0189800 Rorug01G0190200 Rorug01G0190300 Rorug01G0198800 Rorug01G0341700 Rorug02G0445100 Rorug02G0445300 Rorug02G0445400 Rorug02G0452600 Rorug02G0452700 Rorug02G0452800 Rorug02G0453000 Rorug02G0522500 Rorug02G0572500 Rorug05G0203900 Rorug05G0204100 Rorug05G0204200 Rorug05G0204400 Rorug05G0205500 Rorug05G0205600 Rorug05G0484800 Rorug05G0484800 Rorug05G0484900 Rorug05G0570000 Rorug05G0570100 Rorug05G0570200 Rorug05G0570300.1 Rorug05G0570800 Rorug05G0570900 Rorug05G0572200 Rorug05G0572500
rosa_samantha Rh1AG178100 Rh1AG178500 Rh1AG178800 Rh1AG206800 Rh1AG207200 Rh1AG207700 Rh1AG348900 Rh2AG316000 Rh2BG522100 Rh2BG522400 Rh2BG530500 Rh2BG531000 Rh3AG317700 Rh4CG003500 Rh5AG289600 Rh5BG293800 Rh5BG294000 Rh5BG295500 Rh5BG296000 Rh5BG296300 Rh5BG297800 Rh5DG303900 Rh5DG305200 Rh5DG305500 Rh6AG126500
rosa_wichuraiana Rw0G002430 Rw0G013640 Rw1G014810 Rw1G014830 Rw1G014860 Rw1G014870 Rw1G014910 Rw1G017200 Rw1G017210 Rw1G017300 Rw1G017610 Rw1G017670 Rw1G017710 Rw1G017730 Rw1G018330 Rw1G018440 Rw1G031010 Rw1G031040 Rw1G031060 Rw2G042020 Rw2G042760 Rw2G042790 Rw2G042800 Rw2G053460 Rw2G053470 Rw4G000600 Rw5G019620 Rw5G027010 Rw5G049870 Rw5G050460 Rw5G050530 Rw6G007730 Rw6G007740 Rw6G007770 Rw6G007860 Rw6G010660 Rw6G010800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2010, 2942
Acc36I ACCTGC 1 cut(s) 835
AccI GTMKAC 1 cut(s) 2698
AccIII TCCGGA 1 cut(s) 1525
AciI CCGC 5 cut(s) 1832, 1930, 2149, 2325, 2983
AclI AACGTT 1 cut(s) 1628
AclWI GGATC 5 cut(s) 134, 182, 1750, 2592, 2608
AcoI YGGCCR 4 cut(s) 244, 442, 1000, 1588
AcuI CTGAAG 2 cut(s) 517, 1898
AfaI GTAC 4 cut(s) 714, 1278, 1981, 2729
AfeI AGCGCT 1 cut(s) 83
AfiI CCNNNNNNNGG 4 cut(s) 174, 1023, 1077, 1757
AflII CTTAAG 1 cut(s) 1075
AflIII ACRYGT 2 cut(s) 1731, 2352
AgeI ACCGGT 1 cut(s) 743
AhlI ACTAGT 2 cut(s) 401, 1619
AjnI CCWGG 7 cut(s) 69, 167, 1016, 1307, 1756, 2473, 2866
AjuI GAANNNNNNNTTGG 2 cut(s) 1287, 1319
AloI GAACNNNNNNTCC 2 cut(s) 857, 889
Alw21I GWGCWC 1 cut(s) 1912
Alw26I GTCTC 5 cut(s) 47, 592, 834, 2425, 2678
AlwI GGATC 5 cut(s) 134, 182, 1750, 2592, 2608
Aor13HI TCCGGA 1 cut(s) 1525
Aor51HI AGCGCT 1 cut(s) 83
AoxI GGCC 7 cut(s) 244, 442, 525, 723, 1000, 1207, 1588
ApeKI GCWGC 3 cut(s) 273, 1991, 2863
ArsI GACNNNNNNTTYG 6 cut(s) 1004, 1036, 1102, 1134, 1210, 1242
AsiGI ACCGGT 1 cut(s) 743
Asp700I GAANNNNTTC 1 cut(s) 2408
AspLEI GCGC 2 cut(s) 84, 2792
AspS9I GGNCC 4 cut(s) 1057, 1207, 2151, 2537
AsuC2I CCSGG 1 cut(s) 2619
AsuHPI GGTGA 3 cut(s) 631, 1166, 2633
AvaII GGWCC 3 cut(s) 1057, 2151, 2537
BalI TGGCCA 4 cut(s) 246, 444, 1002, 1590
BanII GRGCYC 1 cut(s) 1912
BbsI GAAGAC 3 cut(s) 423, 621, 641
Bbv12I GWGCWC 1 cut(s) 1912
BbvI GCAGC 3 cut(s) 285, 2003, 2850
BciT130I CCWGG 7 cut(s) 71, 169, 1018, 1309, 1758, 2475, 2868
BciVI GTATCC 3 cut(s) 1060, 2355, 2671
BcnI CCSGG 1 cut(s) 2619
BcoDI GTCTC 5 cut(s) 47, 592, 834, 2425, 2678
BcuI ACTAGT 2 cut(s) 401, 1619
BfmI CTRYAG 2 cut(s) 117, 958
BfoI RGCGCY 1 cut(s) 85
BfrI CTTAAG 1 cut(s) 1075
BfuAI ACCTGC 1 cut(s) 835
BfuI GTATCC 3 cut(s) 1060, 2355, 2671
BglII AGATCT 2 cut(s) 937, 1564
BisI GCNGC 3 cut(s) 274, 1992, 2864
BlsI GCNGC 3 cut(s) 275, 1993, 2865
BmcAI AGTACT 1 cut(s) 714
Bme1390I CCNGG 8 cut(s) 71, 169, 1018, 1309, 1758, 2475, 2619, 2868
Bme18I GGWCC 3 cut(s) 1057, 2151, 2537
BmgT120I GGNCC 4 cut(s) 1057, 1207, 2151, 2537
BmiI GGNNCC 3 cut(s) 289, 2539, 2967
BmrFI CCNGG 8 cut(s) 71, 169, 1018, 1309, 1758, 2475, 2619, 2868
BmrI ACTGGG 1 cut(s) 674
BmsI GCATC 4 cut(s) 173, 1545, 1567, 1708
BmuI ACTGGG 1 cut(s) 674
BpiI GAAGAC 3 cut(s) 423, 621, 641
Bpu10I CCTNAGC 1 cut(s) 2205
BpuEI CTTGAG 4 cut(s) 1153, 1384, 2023, 2431
BpuMI CCSGG 1 cut(s) 2619
BsaI GGTCTC 2 cut(s) 592, 834
BsaJI CCNNGG 7 cut(s) 168, 1294, 1307, 1694, 1757, 2617, 2731
BsaWI WCCGGW 2 cut(s) 743, 1525
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bsc4I CCNNNNNNNGG 4 cut(s) 174, 1023, 1077, 1757
Bse118I RCCGGY 1 cut(s) 743
Bse1I ACTGG 8 cut(s) 621, 680, 1228, 1462, 1669, 2279, 2539, 2884
Bse3DI GCAATG 2 cut(s) 397, 2239
BseAI TCCGGA 1 cut(s) 1525
BseBI CCWGG 7 cut(s) 71, 169, 1018, 1309, 1758, 2475, 2868
BseDI CCNNGG 7 cut(s) 168, 1294, 1307, 1694, 1757, 2617, 2731
BseGI GGATG 8 cut(s) 79, 164, 223, 377, 872, 1611, 2346, 2541
BseLI CCNNNNNNNGG 4 cut(s) 174, 1023, 1077, 1757
BseMI GCAATG 2 cut(s) 397, 2239
BseMII CTCAG 6 cut(s) 615, 2069, 2420, 2619, 2754, 2775
BseNI ACTGG 8 cut(s) 621, 680, 1228, 1462, 1669, 2279, 2539, 2884
BseRI GAGGAG 3 cut(s) 589, 2974, 3001
BseXI GCAGC 3 cut(s) 285, 2003, 2850
BseYI CCCAGC 1 cut(s) 921
BsgI GTGCAG 1 cut(s) 1466
BshFI GGCC 7 cut(s) 246, 444, 527, 725, 1002, 1209, 1590
BshTI ACCGGT 1 cut(s) 743
BsiHKAI GWGCWC 1 cut(s) 1912
BsiSI CCGG 3 cut(s) 744, 1526, 2619
BslFI GGGAC 4 cut(s) 762, 1428, 1849, 2523
BslI CCNNNNNNNGG 4 cut(s) 174, 1023, 1077, 1757
BsmAI GTCTC 5 cut(s) 47, 592, 834, 2425, 2678
BsmBI CGTCTC 2 cut(s) 47, 2678
BsmFI GGGAC 4 cut(s) 762, 1428, 1849, 2523
BsmI GAATGC 3 cut(s) 233, 2284, 2948
BsnI GGCC 7 cut(s) 246, 444, 527, 725, 1002, 1209, 1590
Bso31I GGTCTC 2 cut(s) 592, 834
Bsp1286I GDGCHC 1 cut(s) 1912
Bsp13I TCCGGA 1 cut(s) 1525
Bsp19I CCATGG 1 cut(s) 1694
BspACI CCGC 5 cut(s) 1832, 1930, 2149, 2325, 2983
BspANI GGCC 7 cut(s) 246, 444, 527, 725, 1002, 1209, 1590
BspCNI CTCAG 6 cut(s) 614, 2068, 2421, 2618, 2753, 2776
BspEI TCCGGA 1 cut(s) 1525
BspHI TCATGA 1 cut(s) 1686
BspLI GGNNCC 3 cut(s) 289, 2539, 2967
BspMI ACCTGC 1 cut(s) 835
BspPI GGATC 5 cut(s) 134, 182, 1750, 2592, 2608
BspQI GCTCTTC 1 cut(s) 1917
BspTI CTTAAG 1 cut(s) 1075
BspTNI GGTCTC 2 cut(s) 592, 834
BsrDI GCAATG 2 cut(s) 397, 2239
BsrFI RCCGGY 1 cut(s) 743
BsrI ACTGG 8 cut(s) 621, 680, 1228, 1462, 1669, 2279, 2539, 2884
BssAI RCCGGY 1 cut(s) 743
BssECI CCNNGG 7 cut(s) 168, 1294, 1307, 1694, 1757, 2617, 2731
BssT1I CCWWGG 2 cut(s) 1294, 1694
Bst2UI CCWGG 7 cut(s) 71, 169, 1018, 1309, 1758, 2475, 2868
Bst4CI ACNGT 5 cut(s) 206, 1317, 2130, 2380, 2703
Bst6I CTCTTC 1 cut(s) 1917
BstAFI CTTAAG 1 cut(s) 1075
BstC8I GCNNGC 2 cut(s) 271, 2184
BstDSI CCRYGG 1 cut(s) 1694
BstENI CCTNNNNNAGG 1 cut(s) 172
BstF5I GGATG 8 cut(s) 79, 164, 223, 377, 872, 1611, 2346, 2541
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 2 cut(s) 84, 2792
BstMAI GTCTC 5 cut(s) 47, 592, 834, 2425, 2678
BstMWI GCNNNNNNNGC 1 cut(s) 2506
BstNI CCWGG 7 cut(s) 71, 169, 1018, 1309, 1758, 2475, 2868
BstNSI RCATGY 2 cut(s) 660, 1735
BstSCI CCNGG 8 cut(s) 69, 167, 1016, 1307, 1756, 2473, 2617, 2866
BstSFI CTRYAG 2 cut(s) 117, 958
BstV1I GCAGC 3 cut(s) 285, 2003, 2850
BstV2I GAAGAC 3 cut(s) 423, 621, 641
BstX2I RGATCY 6 cut(s) 139, 187, 937, 1564, 2584, 2613
BstXI CCANNNNNNTGG 3 cut(s) 254, 1664, 2828
BstYI RGATCY 6 cut(s) 139, 187, 937, 1564, 2584, 2613
BsuI GTATCC 3 cut(s) 1060, 2355, 2671
BsuRI GGCC 7 cut(s) 246, 444, 527, 725, 1002, 1209, 1590
BtgI CCRYGG 1 cut(s) 1694
BtsCI GGATG 8 cut(s) 79, 164, 223, 377, 872, 1611, 2346, 2541
BtsI GCAGTG 1 cut(s) 1745
BtsIMutI CAGTG 6 cut(s) 609, 614, 1313, 1745, 2098, 2532
BveI ACCTGC 1 cut(s) 835
Cac8I GCNNGC 2 cut(s) 271, 2184
CciI TCATGA 1 cut(s) 1686
CfoI GCGC 2 cut(s) 84, 2792
Cfr10I RCCGGY 1 cut(s) 743
Cfr13I GGNCC 4 cut(s) 1057, 1207, 2151, 2537
CseI GACGC 2 cut(s) 64, 1846
Csp6I GTAC 4 cut(s) 713, 1277, 1980, 2728
CspAI ACCGGT 1 cut(s) 743
CviQI GTAC 4 cut(s) 713, 1277, 1980, 2728
EaeI YGGCCR 4 cut(s) 244, 442, 1000, 1588
Eam1104I CTCTTC 1 cut(s) 1917
EarI CTCTTC 1 cut(s) 1917
EciI GGCGGA 1 cut(s) 2998
Ecl136II GAGCTC 1 cut(s) 1910
Eco130I CCWWGG 2 cut(s) 1294, 1694
Eco24I GRGCYC 1 cut(s) 1912
Eco31I GGTCTC 2 cut(s) 592, 834
Eco47I GGWCC 3 cut(s) 1057, 2151, 2537
Eco47III AGCGCT 1 cut(s) 83
Eco53kI GAGCTC 1 cut(s) 1910
Eco57I CTGAAG 2 cut(s) 517, 1898
EcoICRI GAGCTC 1 cut(s) 1910
EcoNI CCTNNNNNAGG 1 cut(s) 172
EcoRI GAATTC 2 cut(s) 674, 1612
EcoRII CCWGG 7 cut(s) 69, 167, 1016, 1307, 1756, 2473, 2866
EcoT14I CCWWGG 2 cut(s) 1294, 1694
EcoT22I ATGCAT 1 cut(s) 1560
EcoT38I GRGCYC 1 cut(s) 1912
ErhI CCWWGG 2 cut(s) 1294, 1694
Esp3I CGTCTC 2 cut(s) 47, 2678
FalI AAGNNNNNCTT 2 cut(s) 515, 547
FaqI GGGAC 4 cut(s) 762, 1428, 1849, 2523
FauI CCCGC 1 cut(s) 1825
FblI GTMKAC 1 cut(s) 2698
Fnu4HI GCNGC 3 cut(s) 274, 1992, 2864
FokI GGATG 8 cut(s) 86, 151, 230, 364, 859, 1618, 2353, 2528
FriOI GRGCYC 1 cut(s) 1912
Fsp4HI GCNGC 3 cut(s) 274, 1992, 2864
GlaI GCGC 2 cut(s) 83, 2791
GluI GCNGC 3 cut(s) 274, 1992, 2864
GsaI CCCAGC 1 cut(s) 925
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 7 cut(s) 246, 444, 527, 725, 1002, 1209, 1590
HapII CCGG 3 cut(s) 744, 1526, 2619
HgaI GACGC 2 cut(s) 64, 1846
HhaI GCGC 2 cut(s) 84, 2792
Hin6I GCGC 2 cut(s) 82, 2790
HinP1I GCGC 2 cut(s) 82, 2790
HincII GTYRAC 2 cut(s) 804, 2699
HindII GTYRAC 2 cut(s) 804, 2699
HindIII AAGCTT 1 cut(s) 1481
HpaII CCGG 3 cut(s) 744, 1526, 2619
HphI GGTGA 3 cut(s) 631, 1166, 2633
Hpy166II GTNNAC 3 cut(s) 804, 1550, 2699
Hpy8I GTNNAC 3 cut(s) 804, 1550, 2699
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 5 cut(s) 176, 986, 1796, 2110, 2456
HpyCH4III ACNGT 5 cut(s) 206, 1317, 2130, 2380, 2703
HpyCH4IV ACGT 4 cut(s) 237, 1628, 2316, 2354
HpyF10VI GCNNNNNNNGC 1 cut(s) 2506
HpySE526I ACGT 4 cut(s) 237, 1628, 2316, 2354
HspAI GCGC 2 cut(s) 82, 2790
Kpn2I TCCGGA 1 cut(s) 1525
LguI GCTCTTC 1 cut(s) 1917
LmnI GCTCC 4 cut(s) 771, 1298, 1907, 2965
Lsp1109I GCAGC 3 cut(s) 285, 2003, 2850
LweI GCATC 4 cut(s) 173, 1545, 1567, 1708
MaeII ACGT 4 cut(s) 237, 1628, 2316, 2354
MaeIII GTNAC 8 cut(s) 200, 659, 878, 1311, 1317, 1734, 2450, 2875
MfeI CAATTG 2 cut(s) 2040, 2399
MflI RGATCY 6 cut(s) 139, 187, 937, 1564, 2584, 2613
MhlI GDGCHC 1 cut(s) 1912
MlsI TGGCCA 4 cut(s) 246, 444, 1002, 1590
MluNI TGGCCA 4 cut(s) 246, 444, 1002, 1590
MlyI GAGTC 5 cut(s) 1105, 1718, 2427, 2819, 2988
MmeI TCCRAC 5 cut(s) 936, 1004, 1009, 2283, 2872
Mox20I TGGCCA 4 cut(s) 246, 444, 1002, 1590
Mph1103I ATGCAT 1 cut(s) 1560
MroI TCCGGA 1 cut(s) 1525
MroXI GAANNNNTTC 1 cut(s) 2408
MscI TGGCCA 4 cut(s) 246, 444, 1002, 1590
Msp20I TGGCCA 4 cut(s) 246, 444, 1002, 1590
MspA1I CMGCKG 1 cut(s) 2327
MspCI CTTAAG 1 cut(s) 1075
MspI CCGG 3 cut(s) 744, 1526, 2619
MspR9I CCNGG 8 cut(s) 71, 169, 1018, 1309, 1758, 2475, 2619, 2868
MunI CAATTG 2 cut(s) 2040, 2399
Mva1269I GAATGC 3 cut(s) 233, 2284, 2948
MvaI CCWGG 7 cut(s) 71, 169, 1018, 1309, 1758, 2475, 2868
MwoI GCNNNNNNNGC 1 cut(s) 2506
NciI CCSGG 1 cut(s) 2619
NcoI CCATGG 1 cut(s) 1694
NlaIV GGNNCC 3 cut(s) 289, 2539, 2967
NmeAIII GCCGAG 1 cut(s) 2994
NmuCI GTSAC 2 cut(s) 878, 1311
NsiI ATGCAT 1 cut(s) 1560
NspI RCATGY 2 cut(s) 660, 1735
PagI TCATGA 1 cut(s) 1686
PciI ACATGT 1 cut(s) 1731
PciSI GCTCTTC 1 cut(s) 1917
PctI GAATGC 3 cut(s) 233, 2284, 2948
PdmI GAANNNNTTC 1 cut(s) 2408
PfeI GAWTC 8 cut(s) 1141, 1281, 1690, 1882, 2470, 2488, 2576, 2780
PinAI ACCGGT 1 cut(s) 743
PkrI GCNGC 3 cut(s) 275, 1993, 2865
PleI GAGTC 5 cut(s) 1105, 1718, 2427, 2819, 2988
PpsI GAGTC 5 cut(s) 1105, 1718, 2427, 2819, 2988
PscI ACATGT 1 cut(s) 1731
PsiI TTATAA 2 cut(s) 2010, 2942
Psp124BI GAGCTC 1 cut(s) 1912
Psp1406I AACGTT 1 cut(s) 1628
Psp6I CCWGG 7 cut(s) 69, 167, 1016, 1307, 1756, 2473, 2866
PspFI CCCAGC 1 cut(s) 921
PspGI CCWGG 7 cut(s) 69, 167, 1016, 1307, 1756, 2473, 2866
PspN4I GGNNCC 3 cut(s) 289, 2539, 2967
PspPI GGNCC 4 cut(s) 1057, 1207, 2151, 2537
PsrI GAACNNNNNNTAC 2 cut(s) 193, 225
PsuI RGATCY 6 cut(s) 139, 187, 937, 1564, 2584, 2613
RsaI GTAC 4 cut(s) 714, 1278, 1981, 2729
RsaNI GTAC 4 cut(s) 713, 1277, 1980, 2728
SacI GAGCTC 1 cut(s) 1912
SalI GTCGAC 1 cut(s) 2697
SapI GCTCTTC 1 cut(s) 1917
SatI GCNGC 3 cut(s) 274, 1992, 2864
Sau96I GGNCC 4 cut(s) 1057, 1207, 2151, 2537
ScaI AGTACT 1 cut(s) 714
SchI GAGTC 5 cut(s) 1105, 1718, 2427, 2819, 2988
ScrFI CCNGG 8 cut(s) 71, 169, 1018, 1309, 1758, 2475, 2619, 2868
SduI GDGCHC 1 cut(s) 1912
SfaNI GCATC 4 cut(s) 173, 1545, 1567, 1708
SfcI CTRYAG 2 cut(s) 117, 958
SinI GGWCC 3 cut(s) 1057, 2151, 2537
SmlI CTYRAG 5 cut(s) 1075, 1132, 1363, 2002, 2446
SmoI CTYRAG 5 cut(s) 1075, 1132, 1363, 2002, 2446
SpeI ACTAGT 2 cut(s) 401, 1619
SsiI CCGC 5 cut(s) 1832, 1930, 2149, 2325, 2983
SstI GAGCTC 1 cut(s) 1912
StyD4I CCNGG 8 cut(s) 69, 167, 1016, 1307, 1756, 2473, 2617, 2866
StyI CCWWGG 2 cut(s) 1294, 1694
TaaI ACNGT 5 cut(s) 206, 1317, 2130, 2380, 2703
TaiI ACGT 4 cut(s) 240, 1631, 2319, 2357
TaqI TCGA 3 cut(s) 1383, 1682, 2698
TatI WGTACW 1 cut(s) 712
TfiI GAWTC 8 cut(s) 1141, 1281, 1690, 1882, 2470, 2488, 2576, 2780
TscAI CASTG 6 cut(s) 609, 621, 1320, 1752, 2098, 2539
TseFI GTSAC 2 cut(s) 878, 1311
TseI GCWGC 3 cut(s) 273, 1991, 2863
Tsp45I GTSAC 2 cut(s) 878, 1311
TspGWI ACGGA 3 cut(s) 635, 1962, 1997
TspRI CASTG 6 cut(s) 609, 621, 1320, 1752, 2098, 2539
Vha464I CTTAAG 1 cut(s) 1075
VpaK11BI GGWCC 3 cut(s) 1057, 2151, 2537
XagI CCTNNNNNAGG 1 cut(s) 172
XbaI TCTAGA 1 cut(s) 1561
XceI RCATGY 2 cut(s) 660, 1735
XcmI CCANNNNNNNNNTGG 2 cut(s) 995, 1605
XmiI GTMKAC 1 cut(s) 2698
XmnI GAANNNNTTC 1 cut(s) 2408
ZrmI AGTACT 1 cut(s) 714
Zsp2I ATGCAT 1 cut(s) 1560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.