Rmu_sc0001872.1_g000001

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001872.1
OG0000136
Physical Location & Seq
Forward (+)
4090 .. 4812
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001872.1_g000001.1.cds

Sequence Viewer

Length: 399 bp
atgtctcaactcttggaagaaacttcatcacgttctggaagcacagatcgcagcgcaaacgaatcagcacagctacctcctccagcaccagcagtggaagagcaagtcaatacgccaacaagtaaagtcacacgaggacagagcaaaggcattccagaatggaatacaggtgtcaaagtacatgttcaatttaatggaatcaatttccagccggtgggagaaagggcaggtcagcttaagtcacaattgggtcagatagtacgaaatggccatagagttccactaaatattcttgactggaagaaagtcggtaatgatgtgaaggaagaaatttgggaagaggttaagagcaatggtctgagcttgttgcatattggagtagtgaggatgcaaaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

132

Amino Acids

14.56

Weight (kDa)

9.15

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 218
AccB7I CCANNNNNTGG 1 cut(s) 214
AcoI YGGCCR 1 cut(s) 268
AcsI RAATTY 1 cut(s) 330
AfaI GTAC 2 cut(s) 180, 261
AfiI CCNNNNNNNGG 1 cut(s) 214
AflII CTTAAG 1 cut(s) 236
AflIII ACRYGT 1 cut(s) 181
AgsI TTSAA 1 cut(s) 188
AluBI AGCT 3 cut(s) 73, 235, 363
AluI AGCT 3 cut(s) 73, 235, 363
Alw26I GTCTC 1 cut(s) 9
AoxI GGCC 1 cut(s) 268
ApeKI GCWGC 1 cut(s) 51
ApoI RAATTY 1 cut(s) 330
AspLEI GCGC 1 cut(s) 56
BalI TGGCCA 1 cut(s) 270
BauI CACGAG 1 cut(s) 132
BbvI GCAGC 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 9
BfrI CTTAAG 1 cut(s) 236
BfuAI ACCTGC 1 cut(s) 218
BisI GCNGC 1 cut(s) 52
BlsI GCNGC 1 cut(s) 53
BmsI GCATC 1 cut(s) 378
BpmI CTGGAG 1 cut(s) 66
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse118I RCCGGY 1 cut(s) 211
Bse1I ACTGG 1 cut(s) 302
Bse3DI GCAATG 1 cut(s) 358
BseGI GGATG 1 cut(s) 393
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMI GCAATG 1 cut(s) 358
BseMII CTCAG 1 cut(s) 350
BseNI ACTGG 1 cut(s) 302
BseRI GAGGAG 1 cut(s) 69
BseXI GCAGC 1 cut(s) 63
BshFI GGCC 1 cut(s) 270
BsiSI CCGG 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 9
BsmI GAATGC 1 cut(s) 150
BsnI GGCC 1 cut(s) 270
Bsp143I GATC 1 cut(s) 46
BspANI GGCC 1 cut(s) 270
BspCNI CTCAG 1 cut(s) 351
BspMI ACCTGC 1 cut(s) 218
BspQI GCTCTTC 1 cut(s) 93
BspTI CTTAAG 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 358
BsrFI RCCGGY 1 cut(s) 211
BsrI ACTGG 1 cut(s) 302
BssAI RCCGGY 1 cut(s) 211
BssMI GATC 1 cut(s) 46
BssSI CACGAG 1 cut(s) 132
Bst2BI CACGAG 1 cut(s) 132
Bst6I CTCTTC 2 cut(s) 93, 333
BstAFI CTTAAG 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 359
BstF5I GGATG 1 cut(s) 393
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 48
BstNSI RCATGY 1 cut(s) 185
BstV1I GCAGC 1 cut(s) 63
BsuRI GGCC 1 cut(s) 270
BtsCI GGATG 1 cut(s) 393
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 99
BveI ACCTGC 1 cut(s) 218
CfoI GCGC 1 cut(s) 56
Cfr10I RCCGGY 1 cut(s) 211
Csp6I GTAC 2 cut(s) 179, 260
CviAII CATG 1 cut(s) 182
CviJI RGCY 5 cut(s) 73, 211, 235, 270, 363
CviKI_1 RGCY 5 cut(s) 73, 211, 235, 270, 363
CviQI GTAC 2 cut(s) 179, 260
DdeI CTNAG 1 cut(s) 359
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 268
Eam1104I CTCTTC 2 cut(s) 93, 333
EarI CTCTTC 2 cut(s) 93, 333
FaeI CATG 1 cut(s) 185
FaiI YATR 3 cut(s) 183, 273, 372
FatI CATG 1 cut(s) 181
Fnu4HI GCNGC 1 cut(s) 52
Fsp4HI GCNGC 1 cut(s) 52
GlaI GCGC 1 cut(s) 55
GluI GCNGC 1 cut(s) 52
GsuI CTGGAG 1 cut(s) 66
HaeIII GGCC 1 cut(s) 270
HapII CCGG 1 cut(s) 212
HhaI GCGC 1 cut(s) 56
Hin1II CATG 1 cut(s) 185
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HinfI GANTC 2 cut(s) 62, 198
HpaII CCGG 1 cut(s) 212
Hpy188I TCNGA 2 cut(s) 255, 360
Hpy188III TCNNGA 3 cut(s) 36, 155, 293
HpyAV CCTTC 1 cut(s) 316
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 2 cut(s) 370, 391
HpyF10VI GCNNNNNNNGC 1 cut(s) 48
HpyF3I CTNAG 1 cut(s) 359
HpySE526I ACGT 1 cut(s) 31
Hsp92II CATG 1 cut(s) 185
HspAI GCGC 1 cut(s) 54
Kzo9I GATC 1 cut(s) 46
LguI GCTCTTC 1 cut(s) 93
LpnPI CCDG 9 cut(s) 21, 96, 102, 153, 168, 213, 221, 225, 283
Lsp1109I GCAGC 1 cut(s) 63
LweI GCATC 1 cut(s) 378
MaeII ACGT 1 cut(s) 31
MaeIII GTNAC 2 cut(s) 127, 240
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 5 cut(s) 29, 110, 313, 338, 350
MfeI CAATTG 1 cut(s) 245
MlsI TGGCCA 1 cut(s) 270
MluCI AATT 4 cut(s) 188, 202, 245, 330
MluNI TGGCCA 1 cut(s) 270
MnlI CCTC 5 cut(s) 87, 90, 128, 334, 378
Mox20I TGGCCA 1 cut(s) 270
MscI TGGCCA 1 cut(s) 270
MseI TTAA 3 cut(s) 192, 237, 345
Msp20I TGGCCA 1 cut(s) 270
MspCI CTTAAG 1 cut(s) 236
MspI CCGG 1 cut(s) 212
MunI CAATTG 1 cut(s) 245
Mva1269I GAATGC 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 48
NdeII GATC 1 cut(s) 46
NlaIII CATG 1 cut(s) 185
NmuCI GTSAC 2 cut(s) 127, 240
NspI RCATGY 1 cut(s) 185
PciI ACATGT 1 cut(s) 181
PciSI GCTCTTC 1 cut(s) 93
PctI GAATGC 1 cut(s) 150
PfeI GAWTC 2 cut(s) 62, 198
PflMI CCANNNNNTGG 1 cut(s) 214
PkrI GCNGC 1 cut(s) 53
PscI ACATGT 1 cut(s) 181
RsaI GTAC 2 cut(s) 180, 261
RsaNI GTAC 2 cut(s) 179, 260
SapI GCTCTTC 1 cut(s) 93
SaqAI TTAA 3 cut(s) 192, 237, 345
SatI GCNGC 1 cut(s) 52
Sau3AI GATC 1 cut(s) 46
SetI ASST 9 cut(s) 34, 75, 79, 172, 232, 237, 345, 365, 398
SfaNI GCATC 1 cut(s) 378
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 4 cut(s) 188, 202, 245, 330
SspI AATATT 1 cut(s) 289
TaiI ACGT 1 cut(s) 34
TasI AATT 4 cut(s) 188, 202, 245, 330
TatI WGTACW 1 cut(s) 178
TfiI GAWTC 2 cut(s) 62, 198
Tru1I TTAA 3 cut(s) 192, 237, 345
Tru9I TTAA 3 cut(s) 192, 237, 345
TscAI CASTG 1 cut(s) 99
TseFI GTSAC 2 cut(s) 127, 240
TseI GCWGC 1 cut(s) 51
Tsp45I GTSAC 2 cut(s) 127, 240
TspDTI ATGAA 1 cut(s) 15
TspRI CASTG 1 cut(s) 99
Van91I CCANNNNNTGG 1 cut(s) 214
Vha464I CTTAAG 1 cut(s) 236
XapI RAATTY 1 cut(s) 330
XceI RCATGY 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.