Rmu_sc0000376.1_g000010

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000376.1
OG0000136
Physical Location & Seq
Forward (+)
47409 .. 51569
4161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000376.1_g000010.1.cds

Sequence Viewer

Length: 882 bp
atggataagagttggattgatatacgagaaacggactggcataaatatgaagatggagttgatagttttttggagtttgcattcgccaacagtgttgatccaacaaggataaagtgtccttgtaagctatgtcggaatcgctattttaagtctagggaggaagcaagagaggatatactggtagacggattttgggaaacgtatagaatatgggataaacatggtgaaccttccggacctgcagctccatgccaaggtaatggggttaactctgattcgatcatcatggatgatatgtttggcatgattaatgaggcgattgggattcccactgcaaatcctggtttaggtgatgattttcccagtcaattcaatgaatatttggaagagaggccagaagatgaacaagatgatacttttcgtgaagaggtattcactaaagtgatgggagaagatgcacatggacgtgttcgcatgtatggaacaggtgtaactccatctcaagtgtctggtaattccaaagcttatgagactaatgagaaaaggacaattgaggaaatggaaagaaaatatgaggaaatggaaaaaaactatcaaacaaagctagatgatcttaaattgagccatgaatctcaattgggagacatgaaattaaagtacgatgatgtatcgaatcgtctcaatcttttgatggctcatgttggtatccaagtaaacccaagtggaagtacaagtgaacagcaagttagtgatcgcagcatcacctggggcgccatcaccatgatggacaccatccatagcatcatggatagggactgcgccagccctaggctggtggtggacggaggcagtgccctaggcagctgcgtcggtcacacgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

293

Amino Acids

33.21

Weight (kDa)

4.64

Isoelectric Point (pI)

27.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 247
AccB1I GGYRCC 1 cut(s) 770
AccI GTMKAC 1 cut(s) 183
AccIII TCCGGA 1 cut(s) 233
AclWI GGATC 1 cut(s) 92
AcyI GRCGYC 1 cut(s) 771
AfaI GTAC 2 cut(s) 659, 730
AfiI CCNNNNNNNGG 4 cut(s) 254, 347, 828, 832
AflIII ACRYGT 2 cut(s) 466, 876
AgsI TTSAA 1 cut(s) 373
AjiI CACGTC 1 cut(s) 467
AjnI CCWGG 2 cut(s) 340, 764
AleI CACNNNNGTG 1 cut(s) 440
AluBI AGCT 5 cut(s) 127, 245, 524, 604, 864
AluI AGCT 5 cut(s) 127, 245, 524, 604, 864
Alw26I GTCTC 3 cut(s) 524, 636, 683
AlwI GGATC 1 cut(s) 92
Aor13HI TCCGGA 1 cut(s) 233
AoxI GGCC 1 cut(s) 392
ApeKI GCWGC 4 cut(s) 242, 756, 861, 864
AseI ATTAAT 1 cut(s) 309
AspA2I CCTAGG 2 cut(s) 827, 856
AspLEI GCGC 2 cut(s) 773, 821
AspS9I GGNCC 1 cut(s) 236
AsuHPI GGTGA 4 cut(s) 236, 362, 754, 769
AvaII GGWCC 1 cut(s) 236
AvrII CCTAGG 2 cut(s) 827, 856
BaeGI GKGCMC 1 cut(s) 856
BanI GGYRCC 1 cut(s) 770
BbvI GCAGC 4 cut(s) 254, 768, 851, 873
BccI CCATC 7 cut(s) 47, 439, 505, 685, 778, 782, 800
BcgI CGANNNNNNTGC 1 cut(s) 850
BciT130I CCWGG 2 cut(s) 342, 766
BciVI GTATCC 1 cut(s) 716
BcoDI GTCTC 3 cut(s) 524, 636, 683
BfaI CTAG 4 cut(s) 153, 605, 828, 857
BfmI CTRYAG 1 cut(s) 240
BfoI RGCGCY 1 cut(s) 774
BfuAI ACCTGC 1 cut(s) 247
BfuI GTATCC 1 cut(s) 716
BisI GCNGC 4 cut(s) 243, 757, 862, 865
BlnI CCTAGG 2 cut(s) 827, 856
BlsI GCNGC 4 cut(s) 244, 758, 863, 866
Bme1390I CCNGG 2 cut(s) 342, 766
Bme18I GGWCC 1 cut(s) 236
BmgBI CACGTC 1 cut(s) 467
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 1 cut(s) 772
BmrFI CCNGG 2 cut(s) 342, 766
BmrI ACTGGG 1 cut(s) 357
BmsI GCATC 3 cut(s) 445, 768, 810
BmuI ACTGGG 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 486
BsaAI YACGTR 1 cut(s) 879
BsaHI GRCGYC 1 cut(s) 771
BsaJI CCNNGG 4 cut(s) 253, 765, 827, 856
BsaWI WCCGGW 1 cut(s) 233
Bsc4I CCNNNNNNNGG 4 cut(s) 254, 347, 828, 832
Bse1I ACTGG 3 cut(s) 41, 183, 363
BseAI TCCGGA 1 cut(s) 233
BseBI CCWGG 2 cut(s) 342, 766
BseDI CCNNGG 4 cut(s) 253, 765, 827, 856
BseGI GGATG 2 cut(s) 295, 792
BseLI CCNNNNNNNGG 4 cut(s) 254, 347, 828, 832
BseNI ACTGG 3 cut(s) 41, 183, 363
BseSI GKGCMC 1 cut(s) 856
BseXI GCAGC 4 cut(s) 254, 768, 851, 873
BshFI GGCC 1 cut(s) 394
BshNI GGYRCC 1 cut(s) 770
BsiSI CCGG 1 cut(s) 234
BslFI GGGAC 1 cut(s) 827
BslI CCNNNNNNNGG 4 cut(s) 254, 347, 828, 832
BsmAI GTCTC 3 cut(s) 524, 636, 683
BsmBI CGTCTC 1 cut(s) 683
BsmFI GGGAC 1 cut(s) 827
BsmI GAATGC 1 cut(s) 80
BsnI GGCC 1 cut(s) 394
Bsp1286I GDGCHC 1 cut(s) 856
Bsp13I TCCGGA 1 cut(s) 233
Bsp143I GATC 4 cut(s) 97, 279, 610, 751
BspANI GGCC 1 cut(s) 394
BspEI TCCGGA 1 cut(s) 233
BspLI GGNNCC 1 cut(s) 772
BspMAI CTGCAG 1 cut(s) 244
BspMI ACCTGC 1 cut(s) 247
BspPI GGATC 1 cut(s) 92
BspT107I GGYRCC 1 cut(s) 770
BsrI ACTGG 3 cut(s) 41, 183, 363
BssECI CCNNGG 4 cut(s) 253, 765, 827, 856
BssMI GATC 4 cut(s) 97, 279, 610, 751
BssNI GRCGYC 1 cut(s) 771
BssT1I CCWWGG 3 cut(s) 253, 827, 856
Bst2UI CCWGG 2 cut(s) 342, 766
Bst4CI ACNGT 1 cut(s) 92
Bst6I CTCTTC 2 cut(s) 381, 420
BstACI GRCGYC 1 cut(s) 771
BstBAI YACGTR 1 cut(s) 879
BstC8I GCNNGC 1 cut(s) 823
BstENI CCTNNNNNAGG 1 cut(s) 345
BstF5I GGATG 2 cut(s) 295, 792
BstH2I RGCGCY 1 cut(s) 774
BstHHI GCGC 2 cut(s) 773, 821
BstKTI GATC 4 cut(s) 100, 282, 613, 754
BstMAI GTCTC 3 cut(s) 524, 636, 683
BstMBI GATC 4 cut(s) 97, 279, 610, 751
BstNI CCWGG 2 cut(s) 342, 766
BstNSI RCATGY 1 cut(s) 478
BstSCI CCNGG 2 cut(s) 340, 764
BstSFI CTRYAG 1 cut(s) 240
BstSLI GKGCMC 1 cut(s) 856
BstV1I GCAGC 4 cut(s) 254, 768, 851, 873
BstXI CCANNNNNNTGG 1 cut(s) 260
BsuI GTATCC 1 cut(s) 716
BsuRI GGCC 1 cut(s) 394
BtrI CACGTC 1 cut(s) 467
BtsCI GGATG 2 cut(s) 295, 792
BtsI GCAGTG 2 cut(s) 330, 856
BtsIMutI CAGTG 3 cut(s) 97, 330, 856
BveI ACCTGC 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 823
CfoI GCGC 2 cut(s) 773, 821
Cfr13I GGNCC 1 cut(s) 236
CseI GACGC 1 cut(s) 856
Csp6I GTAC 2 cut(s) 658, 729
CviQI GTAC 2 cut(s) 658, 729
DinI GGCGCC 1 cut(s) 772
DpnI GATC 4 cut(s) 99, 281, 612, 753
DpnII GATC 4 cut(s) 97, 279, 610, 751
Eam1104I CTCTTC 2 cut(s) 381, 420
EarI CTCTTC 2 cut(s) 381, 420
Eco130I CCWWGG 3 cut(s) 253, 827, 856
Eco47I GGWCC 1 cut(s) 236
EcoNI CCTNNNNNAGG 1 cut(s) 345
EcoRII CCWGG 2 cut(s) 340, 764
EcoT14I CCWWGG 3 cut(s) 253, 827, 856
EgeI GGCGCC 1 cut(s) 772
EheI GGCGCC 1 cut(s) 772
ErhI CCWWGG 3 cut(s) 253, 827, 856
Esp3I CGTCTC 1 cut(s) 683
FaqI GGGAC 1 cut(s) 827
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 4 cut(s) 243, 757, 862, 865
FokI GGATG 2 cut(s) 302, 779
Fsp4HI GCNGC 4 cut(s) 243, 757, 862, 865
FspBI CTAG 4 cut(s) 153, 605, 828, 857
GlaI GCGC 2 cut(s) 772, 820
GluI GCNGC 4 cut(s) 243, 757, 862, 865
HaeII RGCGCY 1 cut(s) 774
HaeIII GGCC 1 cut(s) 394
HapII CCGG 1 cut(s) 234
HgaI GACGC 1 cut(s) 856
HhaI GCGC 2 cut(s) 773, 821
Hin1I GRCGYC 1 cut(s) 771
Hin6I GCGC 2 cut(s) 771, 819
HinP1I GCGC 2 cut(s) 771, 819
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HindIII AAGCTT 1 cut(s) 522
HinfI GANTC 5 cut(s) 136, 275, 325, 629, 673
HpaI GTTAAC 1 cut(s) 268
HpaII CCGG 1 cut(s) 234
HphI GGTGA 4 cut(s) 236, 362, 754, 769
Hpy166II GTNNAC 6 cut(s) 184, 227, 268, 715, 737, 841
Hpy188I TCNGA 2 cut(s) 135, 274
Hpy188III TCNNGA 2 cut(s) 234, 422
Hpy8I GTNNAC 6 cut(s) 184, 227, 268, 715, 737, 841
Hpy99I CGWCG 1 cut(s) 872
HpyAV CCTTC 1 cut(s) 240
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4IV ACGT 3 cut(s) 200, 466, 878
HpyCH4V TGCA 4 cut(s) 80, 242, 335, 458
HpySE526I ACGT 3 cut(s) 200, 466, 878
Hsp92I GRCGYC 1 cut(s) 771
HspAI GCGC 2 cut(s) 771, 819
KasI GGCGCC 1 cut(s) 770
Kpn2I TCCGGA 1 cut(s) 233
KspAI GTTAAC 1 cut(s) 268
Kzo9I GATC 4 cut(s) 97, 279, 610, 751
LmnI GCTCC 1 cut(s) 250
Lsp1109I GCAGC 4 cut(s) 254, 768, 851, 873
LweI GCATC 3 cut(s) 445, 768, 810
MaeI CTAG 4 cut(s) 153, 605, 828, 857
MaeII ACGT 3 cut(s) 200, 466, 878
MaeIII GTNAC 2 cut(s) 490, 872
MalI GATC 4 cut(s) 99, 281, 612, 753
MboI GATC 4 cut(s) 97, 279, 610, 751
MboII GAAGA 5 cut(s) 62, 398, 410, 437, 464
MfeI CAATTG 2 cut(s) 549, 635
MhlI GDGCHC 1 cut(s) 856
MluCI AATT 6 cut(s) 368, 514, 549, 617, 635, 650
Mly113I GGCGCC 1 cut(s) 771
MmeI TCCRAC 2 cut(s) 113, 125
MnlI CCTC 8 cut(s) 151, 163, 307, 384, 421, 547, 568, 839
MroI TCCGGA 1 cut(s) 233
MseI TTAA 5 cut(s) 147, 267, 309, 615, 653
MslI CAYNNNNRTG 5 cut(s) 45, 440, 465, 779, 782
MspA1I CMGCKG 1 cut(s) 864
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 2 cut(s) 342, 766
MunI CAATTG 2 cut(s) 549, 635
Mva1269I GAATGC 1 cut(s) 80
MvaI CCWGG 2 cut(s) 342, 766
NarI GGCGCC 1 cut(s) 771
NdeII GATC 4 cut(s) 97, 279, 610, 751
NlaIV GGNNCC 1 cut(s) 772
NmuCI GTSAC 1 cut(s) 872
NspI RCATGY 1 cut(s) 478
OliI CACNNNNGTG 1 cut(s) 440
PctI GAATGC 1 cut(s) 80
PfeI GAWTC 5 cut(s) 136, 275, 325, 629, 673
PkrI GCNGC 4 cut(s) 244, 758, 863, 866
PluTI GGCGCC 1 cut(s) 774
Ppu21I YACGTR 1 cut(s) 879
PshBI ATTAAT 1 cut(s) 309
Psp6I CCWGG 2 cut(s) 340, 764
PspGI CCWGG 2 cut(s) 340, 764
PspN4I GGNNCC 1 cut(s) 772
PspPI GGNCC 1 cut(s) 236
PstI CTGCAG 1 cut(s) 244
PvuII CAGCTG 1 cut(s) 864
RsaI GTAC 2 cut(s) 659, 730
RsaNI GTAC 2 cut(s) 658, 729
RseI CAYNNNNRTG 5 cut(s) 45, 440, 465, 779, 782
SaqAI TTAA 5 cut(s) 147, 267, 309, 615, 653
SatI GCNGC 4 cut(s) 243, 757, 862, 865
Sau3AI GATC 4 cut(s) 97, 279, 610, 751
Sau96I GGNCC 1 cut(s) 236
ScrFI CCNGG 2 cut(s) 342, 766
SduI GDGCHC 1 cut(s) 856
SfaNI GCATC 3 cut(s) 445, 768, 810
SfcI CTRYAG 1 cut(s) 240
SfoI GGCGCC 1 cut(s) 772
SinI GGWCC 1 cut(s) 236
SmiMI CAYNNNNRTG 5 cut(s) 45, 440, 465, 779, 782
SmlI CTYRAG 1 cut(s) 501
SmoI CTYRAG 1 cut(s) 501
Sse9I AATT 6 cut(s) 368, 514, 549, 617, 635, 650
SspDI GGCGCC 1 cut(s) 770
SspI AATATT 1 cut(s) 380
SspMI CTAG 4 cut(s) 153, 605, 828, 857
StyD4I CCNGG 2 cut(s) 340, 764
StyI CCWWGG 3 cut(s) 253, 827, 856
TaaI ACNGT 1 cut(s) 92
TaiI ACGT 3 cut(s) 203, 469, 881
TaqI TCGA 2 cut(s) 278, 671
TaqII GACCGA 1 cut(s) 860
TasI AATT 6 cut(s) 368, 514, 549, 617, 635, 650
TatI WGTACW 1 cut(s) 728
TfiI GAWTC 5 cut(s) 136, 275, 325, 629, 673
Tru1I TTAA 5 cut(s) 147, 267, 309, 615, 653
Tru9I TTAA 5 cut(s) 147, 267, 309, 615, 653
TscAI CASTG 3 cut(s) 97, 337, 856
TseFI GTSAC 1 cut(s) 872
TseI GCWGC 4 cut(s) 242, 756, 861, 864
Tsp45I GTSAC 1 cut(s) 872
TspDTI ATGAA 5 cut(s) 63, 390, 417, 642, 662
TspGWI ACGGA 3 cut(s) 47, 201, 858
TspRI CASTG 3 cut(s) 97, 337, 856
VpaK11BI GGWCC 1 cut(s) 236
VspI ATTAAT 1 cut(s) 309
XagI CCTNNNNNAGG 1 cut(s) 345
XceI RCATGY 1 cut(s) 478
XcmI CCANNNNNNNNNTGG 2 cut(s) 781, 829
XmaJI CCTAGG 2 cut(s) 827, 856
XmiI GTMKAC 1 cut(s) 183
XspI CTAG 4 cut(s) 153, 605, 828, 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.