Rorug04G0330100
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
50469593 .. 50475546
5954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0330100.1

Sequence Viewer

Length: 3060 bp
ATGGTGCTTGGGATAAGAGCAAAGAGCCGGAAGAGTGCTGCGGTTGAGGTAGATTATGTTATACATGTGCTGGAAATTAAACCATGGCCCTCGTCTCAGGCTTTGAAATCTGTTGAGTCTGTGTTTCTTCAATGGGGAAATGGTGATCAAGCGTCTGGATCATTCTTTCGTAATGTTGGAGGTGAGAAGATTGAATTCGGGGAGTCGTTCAGGCTTCCGGTTGTTTTGTACAAGGAGAAGTCAAGAAAAAGCTCGGCGCGCGACACTTACCAGAAGAACAACTTTGAGTTTCATCTGTCTGCACCTCGAAAGGACAAGGCAGCTAAACTTTTGGGATCGGCTGTGATAAATCTTGCAGATTATGCGACCATAGTTGAAACCACGAATGTCAGAGTTCCACTGAACTTGAAGAAGAGTTCTAAGAGTTCAGCTCAGCCGGTTCTTTATGTTAATGTTCAGCCTTGTGGTAATGATAGCTCCCACTTGGCCAAACAAGTGTCGCTGGACAACCATGGAAGTCATGGGTCTCTGGATGACGAGATTGCCTCTTTTACTGATGATGATGGTGATGATCAGTCTTCACATTCATCACGCACTGTAACCTCTTCTGCTTTTGAGGCACCAGTCAGTTCATCACCAAGTGCTGATAAGAATGCGTCAGAATCAACAATTGATAACACTAGAAGGATTTATGAGGAACCAACCGTACATTCAATAGCAGCACCTGCAAGCACTGTTATGAATCCAGTCGCTAATGCATTGAAACATCAAAGTGGAAGTTCATCTCCACTGTCGCCAATAGGCTCTTCCTCCCCTCGGAAACCTGCTTATGATTATATTTCTTTGCCTCACCCTTCAAGGGAGAGATCAGTGCCAACCTTGAAAAAATCTGTGACTCAGTCTGTTCAATCATCTTCTTCATCCTCTGGCTATCAAGATGACCATCAAGAGTCTGGTAATTATAATATTAAGACCAACAGAATTCAGAATAGTCTTATTAACAGAGGTGCCAGAATGCAAGAAAATGCACAAGAATCTACAATGGGCAAAATTGTGAGCAACCATGCTTCTGAAGGTACAACCTCAAGTACGTCTCTGCAGCAGGCTACAAACTCAATATCAGCAAGCTATGCAGATTTAGAATCCCCTCGAGATGATGATCATCTCGTAAAGGTGAATGAATATTCTTTTGATGGCAAATTAGCTTCTAGGTTTTCACAAGATGCTACCAGAAAGCCAGTCACTTTAAAGAGTGAAACTTTTACAGTCAGCAATAATGTTGGATCACGGGAAAGCAAGGTTAAAAGTACTGAATTAAAGCATGTAAAGTCCGTGAAACCTTCTATCTCAGCTGAGACCAATAGTCGGTTAAGAAAACATGAGTTTATGAAAAAGTCAAAGGAAGCTGAGATTCCTGAAGATGGTCGTGTTGGTGGTATCATTAGTGCAAAGTGTGAAAGAGAAGAAACAACAACTAGCTGTTCTGATAGTAATATTGAGCTGGAGTCGACAATTGAAATGCTTAAGGATGAGTTGAGAGAAGCGGCTGCTGTTGAGGTTGGCCTTTACTCCATTGTCGCCGAGCATGGGAGTAACACGAATAAGATCCATGCTCCTGCTCGCCGACTTTCTAGATTCTATTTTCATGCTTGCAAAATGAGATCTCAAGCTAAGAAGGCAAATGCAGCAAGAGCTGCTATTACTGGATTAATTTTGGTTTCTAAAGCTTGTGGAAATGATGTTCCAAGGTTGACTTTCTGGTTGTCGAACTCAATTGTGTTGAGAGCTATTGTCAGCCAGGGCTTAGGGAAAGCTCAAGTTTCAAATGAACCATGCACTACAATTAAAGGTGGCAAACAGTATGCAGCGGATAGGCATTTATCAGCAAAGGATAGGATTCGTACTCGCAATGATGAGAAAGATAACATTCTTGAAAGTTTTGATAATTGGGAGGATCCACATATATTTATGGTTGCTTTGGAAAAGTTTGAAGCTTGGATATTCTCCCGGATAGTTGAGTCTGTATGGTGGCAGAATATAACTCCACATATGCAGTCTGCAGCTGCGAAAGGCTCAAGCACAAGGAAAGCTAATGGAAGAAAGAAAGGTTTGGGTGATCATGAGCAGGGTAATTTTTCTATTGAGCTGTGGACGAAGGCTTTCAAAGATGCCTGTGAAAGGCTTTGTCCTGTTCGAGCTGGTGGCCATGAGTGTGGCTGCTTGCCTCTTCTAGCTCGTTTGGTCATGGAGCAGTTGGTGAGTAGGTTGGATGTGGCTATGTTCAATGCTATTCTTCGTGAAAATGCTGAAGAGATGCCCACAGATCCCGTGTCCGACCCTATAAGTGATTCCAAGGTTCTCCCTATTCCAGCTGGAAAATCAAGTTTTGGGGCAGGTGCACAGCTAAAAAATGCGATTGGAAGCTGGTCCAGATGGCTGACTGATCTATTTGGTATGGATGATACTGATGTTCCAGACGATGAGGATGAACTCAGTGATCACAAGGGGCAGGAGAGTGAAACATCCTTTAAAGCTTTCCGTCTTCTCAATGCTTTGAGTGATCTCATGATGCTTCCATCTGAAATGCTTGCAGATAAATCCACCAGAGAAGAGGTATGCCCTACATTCGGTGCATCAATGATCAAGAGGGTCCTTTACAATTTTGTTACAGATGAGTTTTGCCCAGACCCGATTCCCGAAGCAGTTTTTGAGGCTCTTGACAATGAGGAGAATCTGGAAGCTGAAACAGAATCTGTTACAAGTTTCCCATTTATTGCAAATCCCACATTTTATTCACCACCTCCAGCTGCTGCTTCTCTATCAGGCATTACAGGAGAGGTGGGGAGCCCAGCTCACCTAAGGAGTGGGTCATCAGTGCTTAAGAAATCATATACTAGTGATGATGAGCTTGATGAGTTGGATTCACCGATGACTTCAATCGTAGAAAATTCCCAGGTTTCCCCCAAGTCGTTGACAGCCAACCCAATGCTGAAGTGGAAGGGTGGTCGGAAAGTTGTCCGATATCAACTCCTCCGTCAGGTTTGGAAGGACAGTGACTGA

Protein Analysis

1019

Amino Acids

111.78

Weight (kDa)

6.18

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NT-C2 PF10358 12 - 159 1.2e-14 N-terminal C2 in EEIG1 and EHBP1 proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 963
AarI CACCTGC 2 cut(s) 733, 2384
Acc36I ACCTGC 3 cut(s) 733, 832, 2384
AccB1I GGYRCC 2 cut(s) 619, 1007
AccI GTMKAC 1 cut(s) 1508
AccII CGCG 2 cut(s) 259, 261
AciI CCGC 3 cut(s) 41, 1544, 1868
AclWI GGATC 7 cut(s) 166, 343, 1291, 1600, 1949, 1962, 2318
AcoI YGGCCR 2 cut(s) 486, 2203
AcsI RAATTY 3 cut(s) 194, 981, 2947
AcuI CTGAAG 4 cut(s) 1092, 1437, 2328, 3011
AdeI CACNNNGTG 1 cut(s) 641
AfaI GTAC 6 cut(s) 230, 708, 1078, 1090, 1309, 1903
AfiI CCNNNNNNNGG 8 cut(s) 816, 859, 1365, 1421, 1587, 2178, 2627, 3037
AflII CTTAAG 2 cut(s) 1523, 2879
AflIII ACRYGT 1 cut(s) 64
AhdI GACNNNNNGTC 1 cut(s) 1362
AhlI ACTAGT 1 cut(s) 2894
AjnI CCWGG 2 cut(s) 1797, 2952
AjuI GAANNNNNNNTTGG 4 cut(s) 694, 726, 790, 822
AloI GAACNNNNNNTCC 2 cut(s) 1725, 1757
Alw21I GWGCWC 1 cut(s) 2401
Alw26I GTCTC 4 cut(s) 99, 531, 1098, 1349
Alw44I GTGCAC 1 cut(s) 2397
AlwI GGATC 7 cut(s) 166, 343, 1291, 1600, 1949, 1962, 2318
AlwNI CAGNNNCTG 4 cut(s) 725, 2753, 2810, 3057
Ama87I CYCGRG 1 cut(s) 1149
AoxI GGCC 4 cut(s) 86, 486, 1561, 2203
ApaLI GTGCAC 1 cut(s) 2397
ApoI RAATTY 3 cut(s) 194, 981, 2947
AseI ATTAAT 1 cut(s) 1709
Asp700I GAANNNNTTC 1 cut(s) 2159
AspLEI GCGC 2 cut(s) 259, 261
AspS9I GGNCC 3 cut(s) 87, 2427, 2650
AsuC2I CCSGG 1 cut(s) 2008
AvaI CYCGRG 1 cut(s) 1149
AvaII GGWCC 2 cut(s) 2427, 2650
AxyI CCTNAGG 1 cut(s) 2858
BaeGI GKGCMC 1 cut(s) 2401
BaeI ACNNNNGTAYC 2 cut(s) 2454, 2487
BalI TGGCCA 2 cut(s) 488, 2205
BamHI GGATCC 1 cut(s) 1954
BanI GGYRCC 2 cut(s) 619, 1007
BanII GRGCYC 1 cut(s) 2849
BbsI GAAGAC 2 cut(s) 570, 2534
Bbv12I GWGCWC 1 cut(s) 2401
BccI CCATC 6 cut(s) 557, 951, 1187, 1415, 2427, 2584
BciT130I CCWGG 2 cut(s) 1799, 2954
BclI TGATCA 6 cut(s) 145, 571, 1159, 2116, 2497, 2640
BcnI CCSGG 1 cut(s) 2008
BcoDI GTCTC 4 cut(s) 99, 531, 1098, 1349
BcuI ACTAGT 1 cut(s) 2894
BfaI CTAG 6 cut(s) 681, 1209, 1476, 1632, 2231, 2895
BfmI CTRYAG 2 cut(s) 1097, 2058
BfrI CTTAAG 2 cut(s) 1523, 2879
BfuAI ACCTGC 3 cut(s) 733, 832, 2384
BglII AGATCT 1 cut(s) 1661
BlpI GCTNAGC 1 cut(s) 432
BmcAI AGTACT 1 cut(s) 1309
Bme1390I CCNGG 3 cut(s) 1799, 2008, 2954
Bme18I GGWCC 2 cut(s) 2427, 2650
BmeRI GACNNNNNGTC 1 cut(s) 1362
BmeT110I CYCGRG 1 cut(s) 1149
BmgT120I GGNCC 3 cut(s) 87, 2427, 2650
BmiI GGNNCC 6 cut(s) 621, 699, 1009, 1956, 2651, 2846
BmrFI CCNGG 3 cut(s) 1799, 2008, 2954
BmsI GCATC 5 cut(s) 1213, 2158, 2304, 2559, 2642
BpiI GAAGAC 2 cut(s) 570, 2534
BplI GAGNNNNNCTC 6 cut(s) 415, 447, 530, 562, 2836, 2868
BpmI CTGGAG 2 cut(s) 1523, 2787
Bpu10I CCTNAGC 1 cut(s) 1804
Bpu1102I GCTNAGC 1 cut(s) 432
BpuEI CTTGAG 4 cut(s) 1069, 1650, 1800, 2059
BpuMI CCSGG 1 cut(s) 2008
BsaBI GATNNNNATC 3 cut(s) 942, 1158, 1161
BsaI GGTCTC 2 cut(s) 531, 1349
BsaJI CCNNGG 7 cut(s) 83, 511, 815, 1745, 1798, 2352, 2952
BsaWI WCCGGW 1 cut(s) 217
Bsc4I CCNNNNNNNGG 8 cut(s) 816, 859, 1365, 1421, 1587, 2178, 2627, 3037
Bse118I RCCGGY 1 cut(s) 436
Bse1I ACTGG 4 cut(s) 623, 746, 1238, 1708
Bse21I CCTNAGG 1 cut(s) 2858
Bse3DI GCAATG 1 cut(s) 1915
Bse8I GATNNNNATC 3 cut(s) 942, 1158, 1161
BseBI CCWGG 2 cut(s) 1799, 2954
BseDI CCNNGG 7 cut(s) 83, 511, 815, 1745, 1798, 2352, 2952
BseGI GGATG 7 cut(s) 538, 920, 1534, 2275, 2464, 2491, 2522
BseJI GATNNNNATC 3 cut(s) 942, 1158, 1161
BseLI CCNNNNNNNGG 8 cut(s) 816, 859, 1365, 1421, 1587, 2178, 2627, 3037
BseMI GCAATG 1 cut(s) 1915
BseMII CTCAG 7 cut(s) 110, 446, 911, 1344, 1362, 1398, 2506
BseNI ACTGG 4 cut(s) 623, 746, 1238, 1708
BsePI GCGCGC 1 cut(s) 257
BseRI GAGGAG 2 cut(s) 2741, 3020
BseSI GKGCMC 1 cut(s) 2401
BseYI CCCAGC 1 cut(s) 2848
BsgI GTGCAG 1 cut(s) 285
Bsh1236I CGCG 2 cut(s) 259, 261
BshFI GGCC 4 cut(s) 88, 488, 1563, 2205
BshNI GGYRCC 2 cut(s) 619, 1007
BsiHKAI GWGCWC 1 cut(s) 2401
BsiHKCI CYCGRG 1 cut(s) 1149
BsiSI CCGG 4 cut(s) 28, 218, 437, 2008
BslI CCNNNNNNNGG 8 cut(s) 816, 859, 1365, 1421, 1587, 2178, 2627, 3037
BsmAI GTCTC 4 cut(s) 99, 531, 1098, 1349
BsmBI CGTCTC 2 cut(s) 99, 1098
BsmI GAATGC 2 cut(s) 658, 1020
BsnI GGCC 4 cut(s) 88, 488, 1563, 2205
Bso31I GGTCTC 2 cut(s) 531, 1349
BsoBI CYCGRG 1 cut(s) 1149
Bsp1286I GDGCHC 2 cut(s) 2401, 2849
Bsp1407I TGTACA 1 cut(s) 228
Bsp1720I GCTNAGC 1 cut(s) 432
Bsp19I CCATGG 2 cut(s) 83, 511
BspACI CCGC 3 cut(s) 41, 1544, 1868
BspANI GGCC 4 cut(s) 88, 488, 1563, 2205
BspCNI CTCAG 7 cut(s) 109, 445, 910, 1345, 1361, 1399, 2505
BspFNI CGCG 2 cut(s) 259, 261
BspHI TCATGA 2 cut(s) 2119, 2565
BspLI GGNNCC 6 cut(s) 621, 699, 1009, 1956, 2651, 2846
BspMAI CTGCAG 2 cut(s) 1101, 2062
BspMI ACCTGC 3 cut(s) 733, 832, 2384
BspPI GGATC 7 cut(s) 166, 343, 1291, 1600, 1949, 1962, 2318
BspQI GCTCTTC 1 cut(s) 811
BspT107I GGYRCC 2 cut(s) 619, 1007
BspTI CTTAAG 2 cut(s) 1523, 2879
BspTNI GGTCTC 2 cut(s) 531, 1349
BsrDI GCAATG 1 cut(s) 1915
BsrFI RCCGGY 1 cut(s) 436
BsrGI TGTACA 1 cut(s) 228
BsrI ACTGG 4 cut(s) 623, 746, 1238, 1708
BssAI RCCGGY 1 cut(s) 436
BssECI CCNNGG 7 cut(s) 83, 511, 815, 1745, 1798, 2352, 2952
BssHII GCGCGC 1 cut(s) 257
BssT1I CCWWGG 4 cut(s) 83, 511, 1745, 2352
Bst2UI CCWGG 2 cut(s) 1799, 2954
Bst4CI ACNGT 7 cut(s) 598, 706, 736, 792, 1267, 1860, 3053
Bst6I CTCTTC 7 cut(s) 26, 407, 610, 811, 2232, 2304, 2604
BstAFI CTTAAG 2 cut(s) 1523, 2879
BstAPI GCANNNNNTGC 4 cut(s) 362, 725, 1130, 1694
BstAUI TGTACA 1 cut(s) 228
BstC8I GCNNGC 8 cut(s) 259, 730, 1104, 1126, 1621, 1651, 2222, 2589
BstDSI CCRYGG 2 cut(s) 83, 511
BstENI CCTNNNNNAGG 2 cut(s) 2176, 3035
BstF5I GGATG 7 cut(s) 538, 920, 1534, 2275, 2464, 2491, 2522
BstFNI CGCG 2 cut(s) 259, 261
BstHHI GCGC 2 cut(s) 259, 261
BstMAI GTCTC 4 cut(s) 99, 531, 1098, 1349
BstMWI GCNNNNNNNGC 9 cut(s) 258, 362, 617, 725, 1130, 1676, 1685, 1691, 1694
BstNI CCWGG 2 cut(s) 1799, 2954
BstNSI RCATGY 2 cut(s) 68, 1325
BstSCI CCNGG 3 cut(s) 1797, 2006, 2952
BstSFI CTRYAG 2 cut(s) 1097, 2058
BstSLI GKGCMC 1 cut(s) 2401
BstUI CGCG 2 cut(s) 259, 261
BstV2I GAAGAC 2 cut(s) 570, 2534
BstX2I RGATCY 4 cut(s) 1605, 1661, 1954, 2323
BstXI CCANNNNNNTGG 1 cut(s) 2213
BstYI RGATCY 4 cut(s) 1605, 1661, 1954, 2323
Bsu36I CCTNAGG 1 cut(s) 2858
BsuRI GGCC 4 cut(s) 88, 488, 1563, 2205
BtgI CCRYGG 2 cut(s) 83, 511
BtsCI GGATG 7 cut(s) 538, 920, 1534, 2275, 2464, 2491, 2522
BtsIMutI CAGTG 8 cut(s) 398, 594, 732, 788, 876, 2500, 2880, 3058
BveI ACCTGC 3 cut(s) 733, 832, 2384
Cac8I GCNNGC 8 cut(s) 259, 730, 1104, 1126, 1621, 1651, 2222, 2589
CaiI CAGNNNCTG 4 cut(s) 725, 2753, 2810, 3057
CciI TCATGA 2 cut(s) 2119, 2565
CfoI GCGC 2 cut(s) 259, 261
Cfr10I RCCGGY 1 cut(s) 436
Cfr13I GGNCC 3 cut(s) 87, 2427, 2650
CseI GACGC 2 cut(s) 141, 645
Csp6I GTAC 6 cut(s) 229, 707, 1077, 1089, 1308, 1902
CspCI CAANNNNNGTGG 2 cut(s) 387, 422
CviQI GTAC 6 cut(s) 229, 707, 1077, 1089, 1308, 1902
DraI TTTAAA 2 cut(s) 1248, 2530
DraIII CACNNNGTG 1 cut(s) 641
DriI GACNNNNNGTC 1 cut(s) 1362
EaeI YGGCCR 2 cut(s) 486, 2203
Eam1104I CTCTTC 7 cut(s) 26, 407, 610, 811, 2232, 2304, 2604
Eam1105I GACNNNNNGTC 1 cut(s) 1362
EarI CTCTTC 7 cut(s) 26, 407, 610, 811, 2232, 2304, 2604
Eco130I CCWWGG 4 cut(s) 83, 511, 1745, 2352
Eco24I GRGCYC 1 cut(s) 2849
Eco31I GGTCTC 2 cut(s) 531, 1349
Eco32I GATATC 1 cut(s) 3023
Eco47I GGWCC 2 cut(s) 2427, 2650
Eco57I CTGAAG 4 cut(s) 1092, 1437, 2328, 3011
Eco81I CCTNAGG 1 cut(s) 2858
Eco88I CYCGRG 1 cut(s) 1149
EcoNI CCTNNNNNAGG 2 cut(s) 2176, 3035
EcoO109I RGGNCCY 1 cut(s) 2650
EcoRI GAATTC 2 cut(s) 194, 981
EcoRII CCWGG 2 cut(s) 1797, 2952
EcoRV GATATC 1 cut(s) 3023
EcoT14I CCWWGG 4 cut(s) 83, 511, 1745, 2352
EcoT22I ATGCAT 1 cut(s) 760
EcoT38I GRGCYC 1 cut(s) 2849
ErhI CCWWGG 4 cut(s) 83, 511, 1745, 2352
Esp3I CGTCTC 2 cut(s) 99, 1098
FalI AAGNNNNNCTT 4 cut(s) 266, 298, 1738, 1770
FauNDI CATATG 1 cut(s) 2049
FbaI TGATCA 6 cut(s) 145, 571, 1159, 2116, 2497, 2640
FblI GTMKAC 1 cut(s) 1508
FokI GGATG 7 cut(s) 545, 907, 1541, 2282, 2471, 2498, 2509
FriOI GRGCYC 1 cut(s) 2849
FspBI CTAG 6 cut(s) 681, 1209, 1476, 1632, 2231, 2895
GlaI GCGC 2 cut(s) 258, 260
GsaI CCCAGC 1 cut(s) 2852
GsuI CTGGAG 2 cut(s) 1523, 2787
HaeIII GGCC 4 cut(s) 88, 488, 1563, 2205
HapII CCGG 4 cut(s) 28, 218, 437, 2008
HgaI GACGC 2 cut(s) 141, 645
HhaI GCGC 2 cut(s) 259, 261
Hin6I GCGC 2 cut(s) 257, 259
HinP1I GCGC 2 cut(s) 257, 259
HincII GTYRAC 3 cut(s) 1509, 1752, 2973
HindII GTYRAC 3 cut(s) 1509, 1752, 2973
HindIII AAGCTT 3 cut(s) 1725, 1992, 2532
HpaII CCGG 4 cut(s) 28, 218, 437, 2008
Hpy166II GTNNAC 5 cut(s) 1509, 1752, 2151, 2399, 2973
Hpy8I GTNNAC 5 cut(s) 1509, 1752, 2151, 2399, 2973
HpyAV CCTTC 8 cut(s) 678, 864, 1067, 1350, 1669, 2149, 2992, 3040
HpyCH4III ACNGT 7 cut(s) 598, 706, 736, 792, 1267, 1860, 3053
HpyCH4IV ACGT 1 cut(s) 1091
HpyF10VI GCNNNNNNNGC 9 cut(s) 258, 362, 617, 725, 1130, 1676, 1685, 1691, 1694
HpySE526I ACGT 1 cut(s) 1091
HspAI GCGC 2 cut(s) 257, 259
Ksp22I TGATCA 6 cut(s) 145, 571, 1159, 2116, 2497, 2640
LguI GCTCTTC 1 cut(s) 811
LmnI GCTCC 4 cut(s) 482, 1618, 2248, 2844
LweI GCATC 5 cut(s) 1213, 2158, 2304, 2559, 2642
MaeI CTAG 6 cut(s) 681, 1209, 1476, 1632, 2231, 2895
MaeII ACGT 1 cut(s) 1091
MaeIII GTNAC 7 cut(s) 598, 892, 1240, 1592, 2665, 2755, 3053
MfeI CAATTG 3 cut(s) 669, 1512, 1773
MflI RGATCY 4 cut(s) 1605, 1661, 1954, 2323
MhlI GDGCHC 2 cut(s) 2401, 2849
MlsI TGGCCA 2 cut(s) 488, 2205
MluNI TGGCCA 2 cut(s) 488, 2205
MlyI GAGTC 6 cut(s) 125, 212, 889, 959, 1514, 2027
MmeI TCCRAC 6 cut(s) 157, 1261, 2247, 2358, 2898, 2987
Mox20I TGGCCA 2 cut(s) 488, 2205
Mph1103I ATGCAT 1 cut(s) 760
MroXI GAANNNNTTC 1 cut(s) 2159
MscI TGGCCA 2 cut(s) 488, 2205
MslI CAYNNNNRTG 3 cut(s) 737, 771, 2211
Msp20I TGGCCA 2 cut(s) 488, 2205
MspA1I CMGCKG 5 cut(s) 1352, 1868, 2063, 2372, 2807
MspCI CTTAAG 2 cut(s) 1523, 2879
MspI CCGG 4 cut(s) 28, 218, 437, 2008
MspR9I CCNGG 3 cut(s) 1799, 2008, 2954
MunI CAATTG 3 cut(s) 669, 1512, 1773
Mva1269I GAATGC 2 cut(s) 658, 1020
MvaI CCWGG 2 cut(s) 1799, 2954
MvnI CGCG 2 cut(s) 259, 261
MwoI GCNNNNNNNGC 9 cut(s) 258, 362, 617, 725, 1130, 1676, 1685, 1691, 1694
NciI CCSGG 1 cut(s) 2008
NcoI CCATGG 2 cut(s) 83, 511
NdeI CATATG 1 cut(s) 2049
NlaIV GGNNCC 6 cut(s) 621, 699, 1009, 1956, 2651, 2846
NmeAIII GCCGAG 2 cut(s) 233, 1606
NmuCI GTSAC 3 cut(s) 892, 1240, 3053
NsiI ATGCAT 1 cut(s) 760
NspI RCATGY 2 cut(s) 68, 1325
PaeR7I CTCGAG 1 cut(s) 1149
PagI TCATGA 2 cut(s) 2119, 2565
PaqCI CACCTGC 2 cut(s) 733, 2384
PauI GCGCGC 1 cut(s) 257
PciI ACATGT 1 cut(s) 64
PciSI GCTCTTC 1 cut(s) 811
PctI GAATGC 2 cut(s) 658, 1020
PdmI GAANNNNTTC 1 cut(s) 2159
PflFI GACNNNGTC 1 cut(s) 898
PfoI TCCNGGA 1 cut(s) 2006
PleI GAGTC 6 cut(s) 124, 211, 889, 958, 1513, 2026
PpsI GAGTC 6 cut(s) 124, 211, 889, 958, 1513, 2026
PpuMI RGGWCCY 1 cut(s) 2650
PscI ACATGT 1 cut(s) 64
PshBI ATTAAT 1 cut(s) 1709
PsiI TTATAA 1 cut(s) 963
Psp5II RGGWCCY 1 cut(s) 2650
Psp6I CCWGG 2 cut(s) 1797, 2952
PspFI CCCAGC 1 cut(s) 2848
PspGI CCWGG 2 cut(s) 1797, 2952
PspN4I GGNNCC 6 cut(s) 621, 699, 1009, 1956, 2651, 2846
PspPI GGNCC 3 cut(s) 87, 2427, 2650
PspPPI RGGWCCY 1 cut(s) 2650
PsrI GAACNNNNNNTAC 2 cut(s) 690, 722
PstI CTGCAG 2 cut(s) 1101, 2062
PstNI CAGNNNCTG 4 cut(s) 725, 2753, 2810, 3057
PsuI RGATCY 4 cut(s) 1605, 1661, 1954, 2323
PsyI GACNNNGTC 1 cut(s) 898
PteI GCGCGC 1 cut(s) 257
PvuII CAGCTG 4 cut(s) 1352, 2063, 2372, 2807
RsaI GTAC 6 cut(s) 230, 708, 1078, 1090, 1309, 1903
RsaNI GTAC 6 cut(s) 229, 707, 1077, 1089, 1308, 1902
RseI CAYNNNNRTG 3 cut(s) 737, 771, 2211
SalI GTCGAC 1 cut(s) 1507
SapI GCTCTTC 1 cut(s) 811
Sau96I GGNCC 3 cut(s) 87, 2427, 2650
ScaI AGTACT 1 cut(s) 1309
SchI GAGTC 6 cut(s) 125, 212, 889, 959, 1514, 2027
ScrFI CCNGG 3 cut(s) 1799, 2008, 2954
SduI GDGCHC 2 cut(s) 2401, 2849
SfaNI GCATC 5 cut(s) 1213, 2158, 2304, 2559, 2642
SfcI CTRYAG 2 cut(s) 1097, 2058
Sfr274I CTCGAG 1 cut(s) 1149
SinI GGWCC 2 cut(s) 2427, 2650
SlaI CTCGAG 1 cut(s) 1149
SmiMI CAYNNNNRTG 3 cut(s) 737, 771, 2211
SmlI CTYRAG 7 cut(s) 1084, 1149, 1523, 1665, 1815, 2074, 2879
SmoI CTYRAG 7 cut(s) 1084, 1149, 1523, 1665, 1815, 2074, 2879
SpeI ACTAGT 1 cut(s) 2894
SsiI CCGC 3 cut(s) 41, 1544, 1868
SspI AATATT 3 cut(s) 967, 1184, 1495
SspMI CTAG 6 cut(s) 681, 1209, 1476, 1632, 2231, 2895
StyD4I CCNGG 3 cut(s) 1797, 2006, 2952
StyI CCWWGG 4 cut(s) 83, 511, 1745, 2352
TaaI ACNGT 7 cut(s) 598, 706, 736, 792, 1267, 1860, 3053
TaiI ACGT 1 cut(s) 1094
TaqI TCGA 5 cut(s) 307, 1150, 1508, 1766, 2194
TatI WGTACW 2 cut(s) 228, 1307
TauI GCSGC 1 cut(s) 1547
TscAI CASTG 8 cut(s) 405, 601, 739, 795, 876, 2500, 2880, 3058
TseFI GTSAC 3 cut(s) 892, 1240, 3053
Tsp45I GTSAC 3 cut(s) 892, 1240, 3053
TspGWI ACGGA 3 cut(s) 1321, 2528, 3023
TspRI CASTG 8 cut(s) 405, 601, 739, 795, 876, 2500, 2880, 3058
Tth111I GACNNNGTC 1 cut(s) 898
Vha464I CTTAAG 2 cut(s) 1523, 2879
VneI GTGCAC 1 cut(s) 2397
VpaK11BI GGWCC 2 cut(s) 2427, 2650
VspI ATTAAT 1 cut(s) 1709
XagI CCTNNNNNAGG 2 cut(s) 2176, 3035
XapI RAATTY 3 cut(s) 194, 981, 2947
XbaI TCTAGA 1 cut(s) 1631
XceI RCATGY 2 cut(s) 68, 1325
XcmI CCANNNNNNNNNTGG 3 cut(s) 518, 950, 2991
XhoI CTCGAG 1 cut(s) 1149
XmiI GTMKAC 1 cut(s) 1508
XmnI GAANNNNTTC 1 cut(s) 2159
XspI CTAG 6 cut(s) 681, 1209, 1476, 1632, 2231, 2895
ZrmI AGTACT 1 cut(s) 1309
Zsp2I ATGCAT 1 cut(s) 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.