Rh6DG264500

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000136
Physical Location & Seq
Forward (+)
45625571 .. 45640605
15035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG264500.1

Sequence Viewer

Length: 912 bp
ATGGTGTCCTTTTTGGTTTATGGAAAGAACGATTTCATTGTACCGAATCCTTGTTCCAAATCAAGATCAATATCCTTCCCTCTCGATCCAGGTCAAGGAGAAAAGAAATGTGTGAGACGAATAAATCTAGCCGTGCACAAGGAGGAGGTGTCCCTCATAGGACTGGTCGAAAATCGTTTGCTAGACTACGAAAAGAGCATGTTTGTCAAAACAAGAGCTATGAAAACAAGGAATGATGATGGTCAGCCAATTGAAGTACATGATGAGGAGGCTTCTGCCGTCATTCGTCAATTCAATGAATATTTGAGGGACATGCCAGAAGATGAACAAAATGATACTTTTCGTGAAGAGGTATTTACTACAGTGATGGGAGAAGATACACATGGGCGTGTTCGCATGTATGGAACAGGTGTAACTCCATCTCAAGTGTTTGGTAACTCAAAAACTTCTGGGACTACTGAAAAGAAGACAATTGAGGAAATGGAAAAGAAATACCAAACAAAGTTAGATGATCTCAAAGAAAGCCATGAATCTCAATTGGGAGATATGAAATTAAAGTACGAAGATGTGTCGAATCGTCTCAATCTTTTGATGGCACATGTTGGTATCCAAGTAAACCAAAGTGGAAGTACAAGTGAACAGTATCCACACTACCCTCAACTCCTCGTAGTCACCATACACCCTCAATTCCTCAAAGACCTAATGTCGAAACCAACACCTGCTTCCACCGGTGCTGCTGTAGACGATGGAGATACTCATGCGATCTCTGGCAGTGCAGCCACTCCTCTGGCTCCCACAGCTCTCCCGTTTCGAGCTCCCACAGCTTTCTTGCTCCGCACCTTCTCTGGTTTCCACAGCTTTCCCACATTACCTCACTGCAAAACTCCAAAACAGTCAAAACCTGGCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23 Transposase_24

Protein Analysis

303

Amino Acids

33.84

Weight (kDa)

6.22

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 727
Acc36I ACCTGC 1 cut(s) 727
AccI GTMKAC 1 cut(s) 741
AciI CCGC 1 cut(s) 835
AclWI GGATC 1 cut(s) 80
AfaI GTAC 4 cut(s) 42, 258, 560, 631
AfiI CCNNNNNNNGG 1 cut(s) 95
AflIII ACRYGT 1 cut(s) 598
AgeI ACCGGT 1 cut(s) 728
AgsI TTSAA 2 cut(s) 254, 295
AhdI GACNNNNNGTC 1 cut(s) 703
AjnI CCWGG 2 cut(s) 88, 901
AjuI GAANNNNNNNTTGG 2 cut(s) 706, 738
AluBI AGCT 6 cut(s) 218, 800, 815, 824, 858, 909
AluI AGCT 6 cut(s) 218, 800, 815, 824, 858, 909
Alw21I GWGCWC 2 cut(s) 138, 817
Alw26I GTCTC 2 cut(s) 109, 584
Alw44I GTGCAC 1 cut(s) 134
AlwI GGATC 1 cut(s) 80
ApaLI GTGCAC 1 cut(s) 134
ApeKI GCWGC 3 cut(s) 734, 776, 906
AsiGI ACCGGT 1 cut(s) 728
Asp700I GAANNNNTTC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 664
BaeGI GKGCMC 1 cut(s) 138
BanII GRGCYC 1 cut(s) 817
BbsI GAAGAC 1 cut(s) 473
Bbv12I GWGCWC 2 cut(s) 138, 817
BbvI GCAGC 2 cut(s) 721, 788
BccI CCATC 5 cut(s) 233, 361, 427, 586, 740
BceAI ACGGC 2 cut(s) 116, 263
BciT130I CCWGG 2 cut(s) 90, 903
BciVI GTATCC 2 cut(s) 617, 654
BcoDI GTCTC 2 cut(s) 109, 584
BfaI CTAG 2 cut(s) 128, 182
BfmI CTRYAG 2 cut(s) 360, 738
BfuAI ACCTGC 1 cut(s) 727
BfuI GTATCC 2 cut(s) 617, 654
BisI GCNGC 3 cut(s) 735, 777, 907
BlsI GCNGC 3 cut(s) 736, 778, 908
Bme1390I CCNGG 2 cut(s) 90, 903
BmeRI GACNNNNNGTC 1 cut(s) 703
BmiI GGNNCC 1 cut(s) 792
BmrFI CCNGG 2 cut(s) 90, 903
BpiI GAAGAC 1 cut(s) 473
BpuEI CTTGAG 1 cut(s) 408
BsaBI GATNNNNATC 1 cut(s) 70
BsaWI WCCGGW 1 cut(s) 728
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse118I RCCGGY 1 cut(s) 728
Bse1I ACTGG 1 cut(s) 168
Bse8I GATNNNNATC 1 cut(s) 70
BseBI CCWGG 2 cut(s) 90, 903
BseJI GATNNNNATC 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 168
BseRI GAGGAG 4 cut(s) 158, 281, 653, 774
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 2 cut(s) 721, 788
BsgI GTGCAG 1 cut(s) 795
BshTI ACCGGT 1 cut(s) 728
BsiHKAI GWGCWC 2 cut(s) 138, 817
BsiSI CCGG 1 cut(s) 729
BslFI GGGAC 3 cut(s) 136, 323, 466
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 2 cut(s) 109, 584
BsmBI CGTCTC 2 cut(s) 109, 584
BsmFI GGGAC 3 cut(s) 136, 323, 466
Bsp1286I GDGCHC 2 cut(s) 138, 817
Bsp143I GATC 4 cut(s) 65, 85, 511, 762
BspACI CCGC 1 cut(s) 835
BspLI GGNNCC 1 cut(s) 792
BspMI ACCTGC 1 cut(s) 727
BspPI GGATC 1 cut(s) 80
BsrFI RCCGGY 1 cut(s) 728
BsrI ACTGG 1 cut(s) 168
BssAI RCCGGY 1 cut(s) 728
BssMI GATC 4 cut(s) 65, 85, 511, 762
Bst2UI CCWGG 2 cut(s) 90, 903
Bst4CI ACNGT 3 cut(s) 364, 642, 894
Bst6I CTCTTC 1 cut(s) 342
BstKTI GATC 4 cut(s) 68, 88, 514, 765
BstMAI GTCTC 2 cut(s) 109, 584
BstMBI GATC 4 cut(s) 65, 85, 511, 762
BstMWI GCNNNNNNNGC 2 cut(s) 797, 821
BstNI CCWGG 2 cut(s) 90, 903
BstNSI RCATGY 4 cut(s) 202, 316, 400, 602
BstSCI CCNGG 2 cut(s) 88, 901
BstSFI CTRYAG 2 cut(s) 360, 738
BstSLI GKGCMC 1 cut(s) 138
BstV1I GCAGC 2 cut(s) 721, 788
BstV2I GAAGAC 1 cut(s) 473
BstXI CCANNNNNNTGG 1 cut(s) 787
BsuI GTATCC 2 cut(s) 617, 654
BtsI GCAGTG 2 cut(s) 778, 874
BtsIMutI CAGTG 3 cut(s) 369, 778, 874
BveI ACCTGC 1 cut(s) 727
Cfr10I RCCGGY 1 cut(s) 728
Csp6I GTAC 4 cut(s) 41, 257, 559, 630
CspAI ACCGGT 1 cut(s) 728
CviAII CATG 8 cut(s) 199, 260, 313, 383, 397, 527, 599, 758
CviQI GTAC 4 cut(s) 41, 257, 559, 630
DpnI GATC 4 cut(s) 67, 87, 513, 764
DpnII GATC 4 cut(s) 65, 85, 511, 762
DriI GACNNNNNGTC 1 cut(s) 703
Eam1104I CTCTTC 1 cut(s) 342
Eam1105I GACNNNNNGTC 1 cut(s) 703
EarI CTCTTC 1 cut(s) 342
Ecl136II GAGCTC 1 cut(s) 815
Eco24I GRGCYC 1 cut(s) 817
Eco53kI GAGCTC 1 cut(s) 815
EcoICRI GAGCTC 1 cut(s) 815
EcoRII CCWGG 2 cut(s) 88, 901
EcoT38I GRGCYC 1 cut(s) 817
Esp3I CGTCTC 2 cut(s) 109, 584
FaeI CATG 8 cut(s) 202, 263, 316, 386, 400, 530, 602, 761
FaqI GGGAC 3 cut(s) 136, 323, 466
FatI CATG 8 cut(s) 198, 259, 312, 382, 396, 526, 598, 757
FblI GTMKAC 1 cut(s) 741
Fnu4HI GCNGC 3 cut(s) 735, 777, 907
FriOI GRGCYC 1 cut(s) 817
Fsp4HI GCNGC 3 cut(s) 735, 777, 907
FspBI CTAG 2 cut(s) 128, 182
GluI GCNGC 3 cut(s) 735, 777, 907
HapII CCGG 1 cut(s) 729
Hin1II CATG 8 cut(s) 202, 263, 316, 386, 400, 530, 602, 761
HinfI GANTC 3 cut(s) 46, 530, 574
HpaII CCGG 1 cut(s) 729
HphI GGTGA 1 cut(s) 664
Hpy166II GTNNAC 4 cut(s) 136, 616, 638, 742
Hpy188III TCNNGA 3 cut(s) 63, 83, 344
Hpy8I GTNNAC 4 cut(s) 136, 616, 638, 742
HpyAV CCTTC 2 cut(s) 85, 850
HpyCH4III ACNGT 3 cut(s) 364, 642, 894
HpyCH4V TGCA 3 cut(s) 136, 776, 879
HpyF10VI GCNNNNNNNGC 2 cut(s) 797, 821
Hsp92II CATG 8 cut(s) 202, 263, 316, 386, 400, 530, 602, 761
Kzo9I GATC 4 cut(s) 65, 85, 511, 762
LmnI GCTCC 3 cut(s) 796, 820, 837
Lsp1109I GCAGC 2 cut(s) 721, 788
MaeI CTAG 2 cut(s) 128, 182
MaeIII GTNAC 3 cut(s) 412, 434, 670
MalI GATC 4 cut(s) 67, 87, 513, 764
MboI GATC 4 cut(s) 65, 85, 511, 762
MboII GAAGA 5 cut(s) 332, 359, 386, 478, 575
MfeI CAATTG 3 cut(s) 249, 471, 536
MhlI GDGCHC 2 cut(s) 138, 817
MluCI AATT 6 cut(s) 249, 290, 471, 536, 551, 686
MroXI GAANNNNTTC 1 cut(s) 32
MseI TTAA 1 cut(s) 554
MslI CAYNNNNRTG 1 cut(s) 387
MspA1I CMGCKG 1 cut(s) 909
MspI CCGG 1 cut(s) 729
MspR9I CCNGG 2 cut(s) 90, 903
MunI CAATTG 3 cut(s) 249, 471, 536
MvaI CCWGG 2 cut(s) 90, 903
MwoI GCNNNNNNNGC 2 cut(s) 797, 821
NdeII GATC 4 cut(s) 65, 85, 511, 762
NlaIII CATG 8 cut(s) 202, 263, 316, 386, 400, 530, 602, 761
NlaIV GGNNCC 1 cut(s) 792
NmuCI GTSAC 1 cut(s) 670
NspI RCATGY 4 cut(s) 202, 316, 400, 602
PaqCI CACCTGC 1 cut(s) 727
PciI ACATGT 1 cut(s) 598
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 3 cut(s) 46, 530, 574
PinAI ACCGGT 1 cut(s) 728
PkrI GCNGC 3 cut(s) 736, 778, 908
PscI ACATGT 1 cut(s) 598
Psp124BI GAGCTC 1 cut(s) 817
Psp6I CCWGG 2 cut(s) 88, 901
PspGI CCWGG 2 cut(s) 88, 901
PspN4I GGNNCC 1 cut(s) 792
PvuII CAGCTG 1 cut(s) 909
RsaI GTAC 4 cut(s) 42, 258, 560, 631
RsaNI GTAC 4 cut(s) 41, 257, 559, 630
RseI CAYNNNNRTG 1 cut(s) 387
SacI GAGCTC 1 cut(s) 817
SaqAI TTAA 1 cut(s) 554
SatI GCNGC 3 cut(s) 735, 777, 907
Sau3AI GATC 4 cut(s) 65, 85, 511, 762
ScrFI CCNGG 2 cut(s) 90, 903
SduI GDGCHC 2 cut(s) 138, 817
SfcI CTRYAG 2 cut(s) 360, 738
SgrAI CRCCGGYG 1 cut(s) 728
SmiMI CAYNNNNRTG 1 cut(s) 387
SmlI CTYRAG 1 cut(s) 423
SmoI CTYRAG 1 cut(s) 423
Sse9I AATT 6 cut(s) 249, 290, 471, 536, 551, 686
SsiI CCGC 1 cut(s) 835
SspI AATATT 1 cut(s) 302
SspMI CTAG 2 cut(s) 128, 182
SstI GAGCTC 1 cut(s) 817
StyD4I CCNGG 2 cut(s) 88, 901
TaaI ACNGT 3 cut(s) 364, 642, 894
TaqI TCGA 5 cut(s) 84, 168, 572, 707, 811
TasI AATT 6 cut(s) 249, 290, 471, 536, 551, 686
TatI WGTACW 2 cut(s) 256, 629
TfiI GAWTC 3 cut(s) 46, 530, 574
Tru1I TTAA 1 cut(s) 554
Tru9I TTAA 1 cut(s) 554
TscAI CASTG 3 cut(s) 369, 778, 881
TseFI GTSAC 1 cut(s) 670
TseI GCWGC 3 cut(s) 734, 776, 906
Tsp45I GTSAC 1 cut(s) 670
TspDTI ATGAA 6 cut(s) 25, 236, 312, 339, 543, 563
TspRI CASTG 3 cut(s) 369, 778, 881
VneI GTGCAC 1 cut(s) 134
XceI RCATGY 4 cut(s) 202, 316, 400, 602
XmiI GTMKAC 1 cut(s) 741
XmnI GAANNNNTTC 1 cut(s) 32
XspI CTAG 2 cut(s) 128, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.