FvH4_6g21852

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000136
Physical Location & Seq
Reverse (-)
15488740 .. 15491758
3019 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21852.t1

Sequence Viewer

Length: 1116 bp
ATGGATGTAGATATGGTTCGACTAGTCCAAGAAGCTCTAGGAACTGCACATGTTGCAAGACCAGATGCTGAGAATGGTGGCGAAGAAAATTTAGATCCACTTGCTGGTGGCCCAAATGAGTCTACTAAAGAGTTCTTGAAATTAATGAAAGGTGCAAACCAGCCACTATATCCAAGTTCTAAGAAGCATACAGCCTTGTCATTCATTGTCCGAATTCTAGAAAATGGATGGTTTGACACTTCTTTCAAGGATCTGCTTGATATATTTGAGGAGTCTATGCCAGAAGGTGTAAACCTTCCTAAATCCTACAATGAAGCTCAAAAGTTAACACAAGATTTAGGCTTCACTTACTACACAGTGGATGCTTGCCCTAATAGCTGTATGCTATTCCGAAATGGGAGCGATGCAGATCTTGACAACTGTTTGATATTATGGTTGGATAATGGTCACAAGTGGGGGTTTGGGAGCAGTAGGAGATTTTCACCTGAAGATCACAAGGAGCATATGTCTACCATTAAAAATCAATATCCTAATGCCAATGATGTTGATGTTGCACGTATTCATTTTGATGAGTTTGCAGACTGGTTTAAGGCACATGTGAGTTGTCTGCAAAATATGGGTGATGTGTCCTTACCGGAAGAAATTGTGGCTTTGTCAAATCCTCCTAGTCCTTCAGCAGCTAGGCTGAAATCATATACATCCAAAGGCCATTTTTTCCGAGTGAAAAGTGTTGACAACAAGCGAACTAGGCAAAACAGTGGTGTGTCTTTACACGGAGATACTTTACCATATTATGGGAGATTGACAGAGATCATCAAAATTAGCTACTCTATTGATATCAAGTATGTGTTGTTTAGGTGTGAGTGGGCACATCCTTCAGCAGGAGTGAAAAAAGATCCTTTTAACTTCACTTTAGTTAACTTTAGAAGATTGTTATACCAGAATGACCGGGTTAGGGATGAACCATTCATCTTAGCATCTCAAGCCCATCAGGTGTGGTATATCCCAGATCCTTCAGGAGAAGGTTGGCTAAATGTCAGCGAAGTAGAGTCTAAGGACTTCTCTCATGTGCAATTTGACACGAGTGATGAAACGAAGTCAGTGGTAGATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

372

Amino Acids

42.07

Weight (kDa)

5.33

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4216 PF13952 272 - 344 7e-19 Domain of unknown function (DUF4216)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 104, 794
AccI GTMKAC 2 cut(s) 122, 509
AclWI GGATC 4 cut(s) 89, 258, 890, 1004
AcsI RAATTY 2 cut(s) 88, 213
AcuI CTGAAG 4 cut(s) 507, 657, 861, 999
AfiI CCNNNNNNNGG 4 cut(s) 104, 794, 881, 955
AflIII ACRYGT 2 cut(s) 49, 595
AgsI TTSAA 2 cut(s) 139, 247
AhlI ACTAGT 1 cut(s) 22
AluBI AGCT 5 cut(s) 35, 317, 378, 680, 825
AluI AGCT 5 cut(s) 35, 317, 378, 680, 825
AlwI GGATC 4 cut(s) 89, 258, 890, 1004
AlwNI CAGNNNCTG 1 cut(s) 68
AoxI GGCC 2 cut(s) 109, 706
ApeKI GCWGC 1 cut(s) 677
ApoI RAATTY 2 cut(s) 88, 213
AseI ATTAAT 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 110
AsuC2I CCSGG 1 cut(s) 950
AsuHPI GGTGA 2 cut(s) 474, 632
BaeGI GKGCMC 1 cut(s) 871
BauI CACGAG 1 cut(s) 1081
BbvI GCAGC 1 cut(s) 689
BccI CCATC 2 cut(s) 222, 996
BcnI CCSGG 1 cut(s) 950
BcuI ACTAGT 1 cut(s) 22
BfaI CTAG 6 cut(s) 23, 38, 218, 666, 681, 747
BglII AGATCT 1 cut(s) 409
BisI GCNGC 1 cut(s) 678
BlsI GCNGC 1 cut(s) 679
Bme1390I CCNGG 1 cut(s) 950
BmgT120I GGNCC 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 950
BmsI GCATC 4 cut(s) 55, 352, 394, 986
BpuEI CTTGAG 1 cut(s) 966
BpuMI CCSGG 1 cut(s) 950
BsaAI YACGTR 1 cut(s) 557
BsaBI GATNNNNATC 1 cut(s) 408
BsaWI WCCGGW 1 cut(s) 634
BsaXI ACNNNNNCTCC 2 cut(s) 491, 521
Bsc4I CCNNNNNNNGG 4 cut(s) 104, 794, 881, 955
Bse1I ACTGG 1 cut(s) 587
Bse8I GATNNNNATC 1 cut(s) 408
BseGI GGATG 6 cut(s) 10, 233, 367, 698, 871, 964
BseJI GATNNNNATC 1 cut(s) 408
BseLI CCNNNNNNNGG 4 cut(s) 104, 794, 881, 955
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 587
BseRI GAGGAG 1 cut(s) 284
BseSI GKGCMC 1 cut(s) 871
BseXI GCAGC 1 cut(s) 689
BsgI GTGCAG 1 cut(s) 30
BshFI GGCC 2 cut(s) 111, 708
BsiSI CCGG 2 cut(s) 635, 949
BslI CCNNNNNNNGG 4 cut(s) 104, 794, 881, 955
BsnI GGCC 2 cut(s) 111, 708
Bsp1286I GDGCHC 1 cut(s) 871
Bsp143I GATC 7 cut(s) 94, 250, 409, 490, 810, 895, 1009
BspANI GGCC 2 cut(s) 111, 708
BspCNI CTCAG 1 cut(s) 61
BspPI GGATC 4 cut(s) 89, 258, 890, 1004
BsrI ACTGG 1 cut(s) 587
BssMI GATC 7 cut(s) 94, 250, 409, 490, 810, 895, 1009
BssSI CACGAG 1 cut(s) 1081
Bst2BI CACGAG 1 cut(s) 1081
Bst4CI ACNGT 3 cut(s) 358, 422, 758
BstAPI GCANNNNNTGC 1 cut(s) 53
BstBAI YACGTR 1 cut(s) 557
BstC8I GCNNGC 1 cut(s) 367
BstDEI CTNAG 4 cut(s) 69, 180, 973, 1053
BstENI CCTNNNNNAGG 1 cut(s) 879
BstF5I GGATG 6 cut(s) 10, 233, 367, 698, 871, 964
BstKTI GATC 7 cut(s) 97, 253, 412, 493, 813, 898, 1012
BstMBI GATC 7 cut(s) 94, 250, 409, 490, 810, 895, 1009
BstMWI GCNNNNNNNGC 4 cut(s) 53, 375, 748, 983
BstNSI RCATGY 2 cut(s) 53, 599
BstSCI CCNGG 1 cut(s) 948
BstSLI GKGCMC 1 cut(s) 871
BstV1I GCAGC 1 cut(s) 689
BstX2I RGATCY 5 cut(s) 94, 250, 409, 895, 1009
BstYI RGATCY 5 cut(s) 94, 250, 409, 895, 1009
BsuRI GGCC 2 cut(s) 111, 708
BtgZI GCGATG 1 cut(s) 417
BtsCI GGATG 6 cut(s) 10, 233, 367, 698, 871, 964
BtsIMutI CAGTG 3 cut(s) 363, 763, 1107
Cac8I GCNNGC 1 cut(s) 367
CaiI CAGNNNCTG 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 110
CviAII CATG 3 cut(s) 50, 596, 1067
DdeI CTNAG 4 cut(s) 69, 180, 973, 1053
DpnI GATC 7 cut(s) 96, 252, 411, 492, 812, 897, 1011
DpnII GATC 7 cut(s) 94, 250, 409, 490, 810, 895, 1009
Eco32I GATATC 1 cut(s) 838
Eco57I CTGAAG 4 cut(s) 507, 657, 861, 999
EcoNI CCTNNNNNAGG 1 cut(s) 879
EcoRI GAATTC 1 cut(s) 213
EcoRV GATATC 1 cut(s) 838
FaeI CATG 3 cut(s) 53, 599, 1070
FatI CATG 3 cut(s) 49, 595, 1066
FauNDI CATATG 1 cut(s) 504
FblI GTMKAC 2 cut(s) 122, 509
Fnu4HI GCNGC 1 cut(s) 678
FokI GGATG 6 cut(s) 17, 240, 374, 685, 858, 971
Fsp4HI GCNGC 1 cut(s) 678
FspBI CTAG 6 cut(s) 23, 38, 218, 666, 681, 747
GluI GCNGC 1 cut(s) 678
HaeIII GGCC 2 cut(s) 111, 708
HapII CCGG 2 cut(s) 635, 949
Hin1II CATG 3 cut(s) 53, 599, 1070
HincII GTYRAC 3 cut(s) 327, 733, 919
HindII GTYRAC 3 cut(s) 327, 733, 919
HinfI GANTC 3 cut(s) 119, 272, 1049
HpaI GTTAAC 2 cut(s) 327, 919
HpaII CCGG 2 cut(s) 635, 949
HphI GGTGA 2 cut(s) 474, 632
Hpy166II GTNNAC 6 cut(s) 123, 292, 327, 510, 733, 919
Hpy188I TCNGA 4 cut(s) 212, 392, 719, 1115
Hpy188III TCNNGA 4 cut(s) 136, 218, 413, 1017
Hpy8I GTNNAC 6 cut(s) 123, 292, 327, 510, 733, 919
HpyAV CCTTC 6 cut(s) 278, 305, 681, 885, 1016, 1023
HpyCH4III ACNGT 3 cut(s) 358, 422, 758
HpyCH4IV ACGT 1 cut(s) 556
HpyCH4V TGCA 8 cut(s) 47, 56, 155, 407, 554, 578, 610, 1072
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 375, 748, 983
HpyF3I CTNAG 4 cut(s) 69, 180, 973, 1053
HpySE526I ACGT 1 cut(s) 556
Hsp92II CATG 3 cut(s) 53, 599, 1070
KspAI GTTAAC 2 cut(s) 327, 919
Kzo9I GATC 7 cut(s) 94, 250, 409, 490, 810, 895, 1009
LmnI GCTCC 3 cut(s) 399, 465, 499
Lsp1109I GCAGC 1 cut(s) 689
LweI GCATC 4 cut(s) 55, 352, 394, 986
MaeI CTAG 6 cut(s) 23, 38, 218, 666, 681, 747
MaeII ACGT 1 cut(s) 556
MaeIII GTNAC 1 cut(s) 446
MalI GATC 7 cut(s) 96, 252, 411, 492, 812, 897, 1011
MboI GATC 7 cut(s) 94, 250, 409, 490, 810, 895, 1009
MboII GAAGA 4 cut(s) 95, 500, 650, 939
MflI RGATCY 5 cut(s) 94, 250, 409, 895, 1009
MhlI GDGCHC 1 cut(s) 871
MluCI AATT 6 cut(s) 88, 140, 213, 642, 819, 1073
MlyI GAGTC 3 cut(s) 128, 281, 1058
MmeI TCCRAC 1 cut(s) 417
MnlI CCTC 2 cut(s) 262, 672
MseI TTAA 6 cut(s) 143, 326, 516, 588, 903, 918
MslI CAYNNNNRTG 1 cut(s) 567
MspI CCGG 2 cut(s) 635, 949
MspR9I CCNGG 1 cut(s) 950
MwoI GCNNNNNNNGC 4 cut(s) 53, 375, 748, 983
NciI CCSGG 1 cut(s) 950
NdeI CATATG 1 cut(s) 504
NdeII GATC 7 cut(s) 94, 250, 409, 490, 810, 895, 1009
NlaIII CATG 3 cut(s) 53, 599, 1070
NmuCI GTSAC 1 cut(s) 446
NspI RCATGY 2 cut(s) 53, 599
PciI ACATGT 2 cut(s) 49, 595
PflMI CCANNNNNTGG 2 cut(s) 104, 794
PkrI GCNGC 1 cut(s) 679
PleI GAGTC 3 cut(s) 127, 280, 1057
PpsI GAGTC 3 cut(s) 127, 280, 1057
Ppu21I YACGTR 1 cut(s) 557
PscI ACATGT 2 cut(s) 49, 595
PshBI ATTAAT 1 cut(s) 143
PspPI GGNCC 1 cut(s) 110
PsrI GAACNNNNNNTAC 1 cut(s) 32
PstNI CAGNNNCTG 1 cut(s) 68
PsuI RGATCY 5 cut(s) 94, 250, 409, 895, 1009
RseI CAYNNNNRTG 1 cut(s) 567
SaqAI TTAA 6 cut(s) 143, 326, 516, 588, 903, 918
SatI GCNGC 1 cut(s) 678
Sau3AI GATC 7 cut(s) 94, 250, 409, 490, 810, 895, 1009
Sau96I GGNCC 1 cut(s) 110
SchI GAGTC 3 cut(s) 128, 281, 1058
ScrFI CCNGG 1 cut(s) 950
SduI GDGCHC 1 cut(s) 871
SfaNI GCATC 4 cut(s) 55, 352, 394, 986
SmiMI CAYNNNNRTG 1 cut(s) 567
SmlI CTYRAG 1 cut(s) 981
SmoI CTYRAG 1 cut(s) 981
SpeI ACTAGT 1 cut(s) 22
Sse9I AATT 6 cut(s) 88, 140, 213, 642, 819, 1073
SspMI CTAG 6 cut(s) 23, 38, 218, 666, 681, 747
StyD4I CCNGG 1 cut(s) 948
TaaI ACNGT 3 cut(s) 358, 422, 758
TaiI ACGT 1 cut(s) 559
TaqI TCGA 1 cut(s) 19
TasI AATT 6 cut(s) 88, 140, 213, 642, 819, 1073
Tru1I TTAA 6 cut(s) 143, 326, 516, 588, 903, 918
Tru9I TTAA 6 cut(s) 143, 326, 516, 588, 903, 918
TscAI CASTG 3 cut(s) 363, 763, 1107
TseFI GTSAC 1 cut(s) 446
TseI GCWGC 1 cut(s) 677
Tsp45I GTSAC 1 cut(s) 446
TspDTI ATGAA 7 cut(s) 161, 193, 327, 551, 958, 975, 1104
TspGWI ACGGA 1 cut(s) 789
TspRI CASTG 3 cut(s) 363, 763, 1107
Van91I CCANNNNNTGG 2 cut(s) 104, 794
VspI ATTAAT 1 cut(s) 143
XagI CCTNNNNNAGG 1 cut(s) 879
XapI RAATTY 2 cut(s) 88, 213
XbaI TCTAGA 1 cut(s) 217
XceI RCATGY 2 cut(s) 53, 599
XmiI GTMKAC 2 cut(s) 122, 509
XspI CTAG 6 cut(s) 23, 38, 218, 666, 681, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.