Rroxscaffold_1G00039230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000136
Physical Location & Seq
Forward (+)
56825757 .. 56840253
14497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00039230.1

Sequence Viewer

Length: 495 bp
ATGAAGAGAACAAGACAAGCAGGTCGACCTCGTACCATGGCTCAACTGTTGGAAGTAACTTCATCACGTTCGGAAGCACGAGGTCGCAGCGCAAACGAATCAGCACAGCTGCCTCCCGTAGTACCAGCAGAGCTCACGAATTCACCTGCCAATGTTCTCACACCTGTTTCAAACTCTGCACTTATTAGTGCATTTCGATGGAGTTGGAAGCTGAACACCTGTTATCCAGGACTTAACGTTGCAAACAACCGAGGAATAAAGGACTTAGCATATAACAAACAAATTGTGACAAGTTCTGAAAATACAATTTTAAGGAACAGGAATAAGATTGGAACCCGAACACGACTTCTATTGAAATCTGCACACCTAGCTCCGTCGGCTCCAATCCCGTTTCCGGTGCACGGTACTTGCAACCACACTTGTTGTAGGGGTGAGCTTTCGTCCTCACTACTCAATAGGGGCTTCACCCGACTAGGTTTGAAAACCGACACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

17.95

Weight (kDa)

11.08

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 154
AasI GACNNNNNNGTC 1 cut(s) 21
Acc36I ACCTGC 2 cut(s) 11, 154
AccI GTMKAC 1 cut(s) 25
AclI AACGTT 1 cut(s) 237
AcsI RAATTY 1 cut(s) 139
AfaI GTAC 3 cut(s) 34, 123, 406
AfiI CCNNNNNNNGG 2 cut(s) 394, 401
AgsI TTSAA 3 cut(s) 171, 355, 481
AjnI CCWGG 1 cut(s) 226
AluBI AGCT 5 cut(s) 109, 133, 211, 371, 436
AluI AGCT 5 cut(s) 109, 133, 211, 371, 436
Alw21I GWGCWC 2 cut(s) 135, 402
Alw44I GTGCAC 1 cut(s) 398
ApaLI GTGCAC 1 cut(s) 398
ApeKI GCWGC 2 cut(s) 87, 109
ApoI RAATTY 1 cut(s) 139
AspLEI GCGC 1 cut(s) 92
AsuHPI GGTGA 3 cut(s) 135, 443, 457
BaeGI GKGCMC 1 cut(s) 402
BanII GRGCYC 1 cut(s) 135
BauI CACGAG 1 cut(s) 78
Bbv12I GWGCWC 2 cut(s) 135, 402
BbvI GCAGC 2 cut(s) 96, 99
BccI CCATC 1 cut(s) 192
BciT130I CCWGG 1 cut(s) 228
BfaI CTAG 2 cut(s) 368, 473
BfuAI ACCTGC 2 cut(s) 11, 154
BisI GCNGC 2 cut(s) 88, 110
BlsI GCNGC 2 cut(s) 89, 111
Bme1390I CCNGG 1 cut(s) 228
BmiI GGNNCC 2 cut(s) 334, 381
BmrFI CCNGG 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 36, 250
BsaWI WCCGGW 1 cut(s) 394
Bsc4I CCNNNNNNNGG 2 cut(s) 394, 401
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 2 cut(s) 36, 250
BseLI CCNNNNNNNGG 2 cut(s) 394, 401
BseSI GKGCMC 1 cut(s) 402
BseXI GCAGC 2 cut(s) 96, 99
BsgI GTGCAG 2 cut(s) 162, 345
BsiHKAI GWGCWC 2 cut(s) 135, 402
BsiSI CCGG 1 cut(s) 395
BslI CCNNNNNNNGG 2 cut(s) 394, 401
Bsp1286I GDGCHC 2 cut(s) 135, 402
Bsp19I CCATGG 1 cut(s) 36
BspLI GGNNCC 2 cut(s) 334, 381
BspMI ACCTGC 2 cut(s) 11, 154
BssECI CCNNGG 2 cut(s) 36, 250
BssSI CACGAG 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 36
Bst2BI CACGAG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 2 cut(s) 48, 404
BstDEI CTNAG 1 cut(s) 265
BstDSI CCRYGG 1 cut(s) 36
BstHHI GCGC 1 cut(s) 92
BstMWI GCNNNNNNNGC 2 cut(s) 368, 377
BstNI CCWGG 1 cut(s) 228
BstSCI CCNGG 1 cut(s) 226
BstSLI GKGCMC 1 cut(s) 402
BstV1I GCAGC 2 cut(s) 96, 99
BtgI CCRYGG 1 cut(s) 36
BveI ACCTGC 2 cut(s) 11, 154
CfoI GCGC 1 cut(s) 92
Csp6I GTAC 3 cut(s) 33, 122, 405
CspCI CAANNNNNGTGG 2 cut(s) 404, 439
CviAII CATG 1 cut(s) 37
CviJI RGCY 8 cut(s) 41, 109, 133, 211, 371, 380, 436, 462
CviKI_1 RGCY 8 cut(s) 41, 109, 133, 211, 371, 380, 436, 462
CviQI GTAC 3 cut(s) 33, 122, 405
DdeI CTNAG 1 cut(s) 265
DrdI GACNNNNNNGTC 1 cut(s) 21
DseDI GACNNNNNNGTC 1 cut(s) 21
Ecl136II GAGCTC 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 135
Eco53kI GAGCTC 1 cut(s) 133
EcoICRI GAGCTC 1 cut(s) 133
EcoRI GAATTC 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 1 cut(s) 40
FaiI YATR 4 cut(s) 38, 271, 273, 493
FatI CATG 1 cut(s) 36
FblI GTMKAC 1 cut(s) 25
Fnu4HI GCNGC 2 cut(s) 88, 110
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 2 cut(s) 88, 110
FspBI CTAG 2 cut(s) 368, 473
GlaI GCGC 1 cut(s) 91
GluI GCNGC 2 cut(s) 88, 110
HapII CCGG 1 cut(s) 395
HhaI GCGC 1 cut(s) 92
Hin1II CATG 1 cut(s) 40
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HincII GTYRAC 1 cut(s) 26
HindII GTYRAC 1 cut(s) 26
HinfI GANTC 1 cut(s) 98
HpaII CCGG 1 cut(s) 395
HphI GGTGA 3 cut(s) 135, 443, 457
Hpy166II GTNNAC 2 cut(s) 26, 400
Hpy188I TCNGA 2 cut(s) 73, 298
Hpy188III TCNNGA 1 cut(s) 136
Hpy8I GTNNAC 2 cut(s) 26, 400
Hpy99I CGWCG 1 cut(s) 379
HpyCH4III ACNGT 2 cut(s) 48, 404
HpyCH4IV ACGT 2 cut(s) 67, 237
HpyCH4V TGCA 6 cut(s) 179, 191, 242, 362, 400, 411
HpyF10VI GCNNNNNNNGC 2 cut(s) 368, 377
HpyF3I CTNAG 1 cut(s) 265
HpySE526I ACGT 2 cut(s) 67, 237
Hsp92II CATG 1 cut(s) 40
HspAI GCGC 1 cut(s) 90
LmnI GCTCC 2 cut(s) 376, 385
LpnPI CCDG 9 cut(s) 6, 138, 159, 177, 213, 232, 240, 304, 408
Lsp1109I GCAGC 2 cut(s) 96, 99
MaeI CTAG 2 cut(s) 368, 473
MaeII ACGT 2 cut(s) 67, 237
MaeIII GTNAC 2 cut(s) 55, 286
MboII GAAGA 1 cut(s) 16
MhlI GDGCHC 2 cut(s) 135, 402
MluCI AATT 3 cut(s) 139, 282, 306
MmeI TCCRAC 2 cut(s) 30, 185
MnlI CCTC 5 cut(s) 39, 74, 123, 245, 454
MseI TTAA 2 cut(s) 234, 311
MslI CAYNNNNRTG 1 cut(s) 196
MspA1I CMGCKG 1 cut(s) 109
MspI CCGG 1 cut(s) 395
MspR9I CCNGG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 2 cut(s) 368, 377
NcoI CCATGG 1 cut(s) 36
NlaIII CATG 1 cut(s) 40
NlaIV GGNNCC 2 cut(s) 334, 381
NmuCI GTSAC 1 cut(s) 286
PaqCI CACCTGC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 98
PfoI TCCNGGA 1 cut(s) 226
PkrI GCNGC 2 cut(s) 89, 111
Psp124BI GAGCTC 1 cut(s) 135
Psp1406I AACGTT 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 2 cut(s) 334, 381
PvuII CAGCTG 1 cut(s) 109
RsaI GTAC 3 cut(s) 34, 123, 406
RsaNI GTAC 3 cut(s) 33, 122, 405
RseI CAYNNNNRTG 1 cut(s) 196
SacI GAGCTC 1 cut(s) 135
SalI GTCGAC 1 cut(s) 24
SaqAI TTAA 2 cut(s) 234, 311
SatI GCNGC 2 cut(s) 88, 110
ScrFI CCNGG 1 cut(s) 228
SduI GDGCHC 2 cut(s) 135, 402
SmiMI CAYNNNNRTG 1 cut(s) 196
Sse9I AATT 3 cut(s) 139, 282, 306
SspMI CTAG 2 cut(s) 368, 473
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 226
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 2 cut(s) 48, 404
TaiI ACGT 2 cut(s) 70, 240
TaqI TCGA 2 cut(s) 25, 196
TasI AATT 3 cut(s) 139, 282, 306
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 2 cut(s) 234, 311
Tru9I TTAA 2 cut(s) 234, 311
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 2 cut(s) 87, 109
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 2 cut(s) 17, 51
TspGWI ACGGA 1 cut(s) 363
VneI GTGCAC 1 cut(s) 398
XapI RAATTY 1 cut(s) 139
XmiI GTMKAC 1 cut(s) 25
XspI CTAG 2 cut(s) 368, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.