Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000136

Physical Location & Seq

Genomic Coordinates Forward (+)

7824735 .. 7828608

Gene Structure 3874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g08110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGGGGAAGGAATTCTTGACCAGTTGGTCCTTTTGGTACTAAGGAAAATATGTGGACTTTGTACACTGTACTTGCAGTTTAGTGATGGAAGGAGAGAGAGAGAGAGGAGAGCATTAACTTATATTATGAAGGTATGTTTCAAAACCACTTACCTCATAGGCAATCCAATCAAGCTGGCTGGACCTGCCCCTTCTAAACATGACCTTATAGCCAAAATCACTGAAGAGGTAACAAAGAAATTGAAAGAGTCTTTCGATAAGAAATTGGAGGATGCTATTAAAATGCTTCAAGCTCAGATTGCCAATAATATAGATTGCACAATTGCACATGGGGAAGAAACACAATTGCACATGGACTGGTTAGTACCAGTTGATGCAACAAGTGGCCATGAGGCTAGGAGAGAGTCCATAGGAGAGGGAGATGTTGAGGCCACTGCCCATTTTGATTCAAATTATGATGATGTCGCTGGTCACCATGAAGCTCCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0008150 GO:0008152 GO:0009850 GO:0009987 GO:0010178 GO:0010179 GO:0010817 GO:0012505 GO:0016787 GO:0016810 GO:0042445 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

164

Amino Acids

18.2

Weight (kDa)

5.63

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000136)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica	MD16G1158000.v1.1
prunus_persica	Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata	RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora	Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa	Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha	Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana	Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	26
Acc36I	ACCTGC	1 cut(s)	193
AcoI	YGGCCR	1 cut(s)	385
AcsI	RAATTY	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	4 cut(s)	39, 64, 71, 366
AgsI	TTSAA	4 cut(s)	142, 244, 290, 450
AluBI	AGCT	3 cut(s)	175, 293, 482
AluI	AGCT	3 cut(s)	175, 293, 482
AoxI	GGCC	2 cut(s)	385, 429
ApoI	RAATTY	1 cut(s)	12
Asp700I	GAANNNNTTC	1 cut(s)	12
AspS9I	GGNCC	2 cut(s)	28, 182
AsuHPI	GGTGA	1 cut(s)	464
AvaII	GGWCC	2 cut(s)	28, 182
BalI	TGGCCA	1 cut(s)	387
BccI	CCATC	1 cut(s)	80
BfaI	CTAG	1 cut(s)	396
BfuAI	ACCTGC	1 cut(s)	193
Bme18I	GGWCC	2 cut(s)	28, 182
BmgT120I	GGNCC	2 cut(s)	28, 182
BmsI	GCATC	2 cut(s)	262, 364
Bse1I	ACTGG	3 cut(s)	22, 362, 368
BseGI	GGATG	1 cut(s)	277
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	3 cut(s)	22, 362, 368
BseRI	GAGGAG	1 cut(s)	121
BshFI	GGCC	2 cut(s)	387, 431
BsnI	GGCC	2 cut(s)	387, 431
Bsp1407I	TGTACA	1 cut(s)	62
BspANI	GGCC	2 cut(s)	387, 431
BspCNI	CTCAG	1 cut(s)	307
BspMI	ACCTGC	1 cut(s)	193
BsrGI	TGTACA	1 cut(s)	62
BsrI	ACTGG	3 cut(s)	22, 362, 368
Bst4CI	ACNGT	1 cut(s)	69
Bst6I	CTCTTC	1 cut(s)	219
BstAUI	TGTACA	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	2 cut(s)	41, 294
BstEII	GGTNACC	1 cut(s)	470
BstF5I	GGATG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 299
BstPI	GGTNACC	1 cut(s)	470
BsuRI	GGCC	2 cut(s)	387, 431
BtsCI	GGATG	1 cut(s)	277
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	3 cut(s)	65, 219, 432
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	177
Cfr13I	GGNCC	2 cut(s)	28, 182
Csp6I	GTAC	4 cut(s)	38, 63, 70, 365
CviAII	CATG	6 cut(s)	200, 329, 352, 389, 476, 489
CviJI	RGCY	8 cut(s)	175, 179, 212, 293, 387, 395, 431, 482
CviKI_1	RGCY	8 cut(s)	175, 179, 212, 293, 387, 395, 431, 482
CviQI	GTAC	4 cut(s)	38, 63, 70, 365
DdeI	CTNAG	2 cut(s)	41, 294
DrdI	GACNNNNNNGTC	1 cut(s)	26
DseDI	GACNNNNNNGTC	1 cut(s)	26
EaeI	YGGCCR	1 cut(s)	385
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Eco47I	GGWCC	2 cut(s)	28, 182
Eco57I	CTGAAG	1 cut(s)	243
Eco91I	GGTNACC	1 cut(s)	470
EcoO65I	GGTNACC	1 cut(s)	470
EcoRI	GAATTC	1 cut(s)	12
FaeI	CATG	6 cut(s)	203, 332, 355, 392, 479, 492
FalI	AAGNNNNNCTT	1 cut(s)	32
FatI	CATG	6 cut(s)	199, 328, 351, 388, 475, 488
FokI	GGATG	1 cut(s)	284
FspBI	CTAG	1 cut(s)	396
HaeIII	GGCC	2 cut(s)	387, 431
Hin1II	CATG	6 cut(s)	203, 332, 355, 392, 479, 492
HinfI	GANTC	3 cut(s)	248, 404, 446
HphI	GGTGA	1 cut(s)	464
Hpy166II	GTNNAC	2 cut(s)	56, 65
Hpy188I	TCNGA	1 cut(s)	297
Hpy188III	TCNNGA	1 cut(s)	17
Hpy8I	GTNNAC	2 cut(s)	56, 65
HpyAV	CCTTC	3 cut(s)	84, 124, 201
HpyCH4III	ACNGT	1 cut(s)	69
HpyCH4V	TGCA	6 cut(s)	76, 318, 326, 349, 377, 488
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 299
HpyF3I	CTNAG	2 cut(s)	41, 294
Hsp92II	CATG	6 cut(s)	203, 332, 355, 392, 479, 492
LmnI	GCTCC	1 cut(s)	487
LpnPI	CCDG	7 cut(s)	35, 161, 165, 198, 343, 381, 453
LweI	GCATC	2 cut(s)	262, 364
MaeI	CTAG	1 cut(s)	396
MaeIII	GTNAC	2 cut(s)	229, 470
MboII	GAAGA	2 cut(s)	236, 347
MfeI	CAATTG	2 cut(s)	321, 344
MlsI	TGGCCA	1 cut(s)	387
MluCI	AATT	6 cut(s)	12, 239, 263, 321, 344, 451
MluNI	TGGCCA	1 cut(s)	387
MlyI	GAGTC	2 cut(s)	257, 413
MnlI	CCTC	7 cut(s)	99, 164, 220, 262, 385, 409, 421
Mox20I	TGGCCA	1 cut(s)	387
MroXI	GAANNNNTTC	1 cut(s)	12
MscI	TGGCCA	1 cut(s)	387
MseI	TTAA	2 cut(s)	116, 279
Msp20I	TGGCCA	1 cut(s)	387
MunI	CAATTG	2 cut(s)	321, 344
MwoI	GCNNNNNNNGC	2 cut(s)	185, 299
NlaIII	CATG	6 cut(s)	203, 332, 355, 392, 479, 492
NmuCI	GTSAC	1 cut(s)	470
PdmI	GAANNNNTTC	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	446
PleI	GAGTC	2 cut(s)	256, 412
PpsI	GAGTC	2 cut(s)	256, 412
PspEI	GGTNACC	1 cut(s)	470
PspPI	GGNCC	2 cut(s)	28, 182
RsaI	GTAC	4 cut(s)	39, 64, 71, 366
RsaNI	GTAC	4 cut(s)	38, 63, 70, 365
SaqAI	TTAA	2 cut(s)	116, 279
Sau96I	GGNCC	2 cut(s)	28, 182
SchI	GAGTC	2 cut(s)	257, 413
SetI	ASST	8 cut(s)	135, 156, 177, 187, 207, 231, 295, 484
SfaNI	GCATC	2 cut(s)	262, 364
SinI	GGWCC	2 cut(s)	28, 182
Sse9I	AATT	6 cut(s)	12, 239, 263, 321, 344, 451
SspMI	CTAG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	69
TaqI	TCGA	1 cut(s)	255
TasI	AATT	6 cut(s)	12, 239, 263, 321, 344, 451
TatI	WGTACW	2 cut(s)	62, 69
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	2 cut(s)	116, 279
Tru9I	TTAA	2 cut(s)	116, 279
TscAI	CASTG	3 cut(s)	72, 226, 439
TseFI	GTSAC	1 cut(s)	470
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	2 cut(s)	143, 492
TspRI	CASTG	3 cut(s)	72, 226, 439
VpaK11BI	GGWCC	2 cut(s)	28, 182
XapI	RAATTY	1 cut(s)	12
XmnI	GAANNNNTTC	1 cut(s)	12
XspI	CTAG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.