Rorug02G0276900

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000136
Physical Location & Seq
Forward (+)
29817720 .. 29819475
1756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0276900.1

Sequence Viewer

Length: 1290 bp
ATGGGAAGGGACGACCTCTACATCACGGTGCCGAGCTTTTTCCGGTGCCCGATTTCACTTGACGTGATGAAATCCCCCGTCAGCCTCTGCACCGGGGTCACCTACGACCGCGCCAGCATCCAGCGCTGGCTGGACGACGGCAACAGCACCTGCCCCGCCACCATGCAAGTCCTCTCTTCTAAGGACTTCGTACCCAACCGCACCCTCCACCGCCTCATACAGATCTGGTCCGAATCGGCGCGTCTCCGAAAGGCGCGATTCGAGAGCGACAACAGCAGCAACTCGAAAGACCAGGTGGCGGAGCTGATTCGGCAGATGGTGGACCGCCACAGCTCCTCGTCTGTGGATTCGCTGGCCAAGATTGTGCGGTTCGCCAAGGAGTCGGAAGAGAACAGGAAGTTTCTCGCCAACTGCGACGGCTTTGTGCCGCTGCTCGTCGAGGCTCTCGCCGGCGGCTGCGGCAATGCCGGCGACGGGAGCAACAACATTCGCATTCTCGAGCAAATCGTCAGGATCATTCATTTTCTGATTGGAGAAATCCAAGACTCTGACGAATTGGTGAGGTTGATGTTGAAGAAGAGCGGCGCTGGCGCCGGTGGTGGAGATTGCTTGGCATCTCTGCTGCTTGTTCTCCAACAGGGAAGCGCCGAGTCTCGAATCGCCTCGGCTATGGTTATGGAGTCGGTCGCCGTGAGCGCCGAGTCCAAGCTCTTGATCGCCGAGCGGGACGGAGTGTTGCCGGAATTGTTGAAATTAACGAGTCCGGAAAAAGACTCCACCCTAATCGAAGCCGGACTGTCGTGCCTCATCGCCGTTTCGGTGCCGAAACGCGTGAAGGTGAAACTAGTCCAACTCGGCGCCGTCAAGTCTCTGTCCAAACTGTTGTCGGACTCGAACTCCACGACGTCGACGATCGAGAAGGTTCTGAAGCTGCTCGAAACGGTGTCGTCGGTGAAGGAAGGGCGGGCGAAGATTTGCGAGGCGGAGGAGGAGGAAGGAGGCGACTGCTGCGTGTCGGCGATCGTGCAGAGACTGCTGAAGGCGTCGAGCACGGCGACGGAGCACGCGGTGACGATTCTGTGGAGCGTGTGCTACTTGTTCAAGGAGCGATCGGCGCAGGAGGCGGTGACGAAGGCCAACGGGTTGACCAAGATTCTGCTGTTGATGCAGAGCAATTGCTCGCCGTTCGTCCGGCAAATGTCCGCCGATTTGCTTAAGATTTTCCGGGTGAATTCCAAGTCCACCATTTCGTGTTATGATACTAAGACCACTCATATTATGCCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23 Transposase_24

Protein Analysis

429

Amino Acids

46.74

Weight (kDa)

7.89

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 10 - 79 5.8e-18 U-box domain
ARM_PUB PF25598 98 - 426 4.6e-73 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 158
AatII GACGTC 1 cut(s) 908
Acc36I ACCTGC 1 cut(s) 158
AccB1I GGYRCC 5 cut(s) 28, 45, 590, 820, 857
AccBSI CCGCTC 2 cut(s) 582, 724
AccI GTMKAC 1 cut(s) 908
AccII CGCG 5 cut(s) 111, 241, 256, 831, 1067
AccIII TCCGGA 1 cut(s) 763
AclWI GGATC 1 cut(s) 521
AcoI YGGCCR 1 cut(s) 354
AcsI RAATTY 1 cut(s) 1231
AcuI CTGAAG 2 cut(s) 947, 1058
AcyI GRCGYC 4 cut(s) 591, 858, 905, 1043
AdeI CACNNNGTG 1 cut(s) 1069
AfaI GTAC 1 cut(s) 192
AfeI AGCGCT 1 cut(s) 125
AfiI CCNNNNNNNGG 2 cut(s) 298, 474
AflII CTTAAG 1 cut(s) 1214
AflIII ACRYGT 1 cut(s) 829
AgsI TTSAA 3 cut(s) 574, 751, 1102
AhlI ACTAGT 1 cut(s) 844
AjiI CACGTC 1 cut(s) 64
AjnI CCWGG 1 cut(s) 291
AluBI AGCT 5 cut(s) 36, 304, 333, 709, 931
AluI AGCT 5 cut(s) 36, 304, 333, 709, 931
Alw21I GWGCWC 2 cut(s) 1052, 1065
Alw26I GTCTC 4 cut(s) 248, 657, 873, 1024
AlwI GGATC 1 cut(s) 521
AlwNI CAGNNNCTG 3 cut(s) 87, 150, 1033
Ama87I CYCGRG 1 cut(s) 497
Aor13HI TCCGGA 1 cut(s) 763
Aor51HI AGCGCT 1 cut(s) 125
AoxI GGCC 2 cut(s) 354, 1134
ApeKI GCWGC 6 cut(s) 276, 430, 456, 622, 931, 1008
ApoI RAATTY 1 cut(s) 1231
AspS9I GGNCC 2 cut(s) 228, 322
AsuC2I CCSGG 2 cut(s) 94, 1226
AsuHPI GGTGA 7 cut(s) 91, 571, 850, 964, 1081, 1138, 1240
AvaI CYCGRG 1 cut(s) 497
AvaII GGWCC 2 cut(s) 228, 322
BaeGI GKGCMC 1 cut(s) 50
BalI TGGCCA 1 cut(s) 356
BanI GGYRCC 5 cut(s) 28, 45, 590, 820, 857
Bbv12I GWGCWC 2 cut(s) 1052, 1065
BbvI GCAGC 6 cut(s) 288, 417, 443, 609, 918, 995
BccI CCATC 1 cut(s) 310
BceAI ACGGC 7 cut(s) 154, 433, 674, 797, 845, 1068, 1168
BciT130I CCWGG 1 cut(s) 293
BcnI CCSGG 2 cut(s) 94, 1226
BcoDI GTCTC 4 cut(s) 248, 657, 873, 1024
BcuI ACTAGT 1 cut(s) 844
BfaI CTAG 1 cut(s) 845
BfoI RGCGCY 6 cut(s) 127, 588, 594, 648, 699, 861
BfrI CTTAAG 1 cut(s) 1214
BfuAI ACCTGC 1 cut(s) 158
BglII AGATCT 1 cut(s) 222
Bme1390I CCNGG 3 cut(s) 94, 293, 1226
Bme18I GGWCC 2 cut(s) 228, 322
BmeT110I CYCGRG 1 cut(s) 497
BmgBI CACGTC 1 cut(s) 64
BmgT120I GGNCC 2 cut(s) 228, 322
BmiI GGNNCC 5 cut(s) 30, 47, 592, 822, 859
BmrFI CCNGG 3 cut(s) 94, 293, 1226
BmsI GCATC 3 cut(s) 126, 623, 1155
BpuMI CCSGG 2 cut(s) 94, 1226
BsaHI GRCGYC 4 cut(s) 591, 858, 905, 1043
BsaJI CCNNGG 3 cut(s) 93, 375, 663
BsaWI WCCGGW 2 cut(s) 42, 763
BsaXI ACNNNNNCTCC 2 cut(s) 881, 911
Bsc4I CCNNNNNNNGG 2 cut(s) 298, 474
Bse118I RCCGGY 3 cut(s) 449, 467, 593
Bse3DI GCAATG 1 cut(s) 469
BseAI TCCGGA 1 cut(s) 763
BseBI CCWGG 1 cut(s) 293
BseDI CCNNGG 3 cut(s) 93, 375, 663
BseGI GGATG 1 cut(s) 117
BseLI CCNNNNNNNGG 2 cut(s) 298, 474
BseMI GCAATG 1 cut(s) 469
BseRI GAGGAG 3 cut(s) 325, 1001, 1004
BseSI GKGCMC 1 cut(s) 50
BseXI GCAGC 6 cut(s) 288, 417, 443, 609, 918, 995
BsgI GTGCAG 2 cut(s) 73, 1046
Bsh1236I CGCG 5 cut(s) 111, 241, 256, 831, 1067
Bsh1285I CGRYCG 5 cut(s) 109, 687, 915, 1023, 1112
BshFI GGCC 2 cut(s) 356, 1136
BshNI GGYRCC 5 cut(s) 28, 45, 590, 820, 857
BsiEI CGRYCG 5 cut(s) 109, 687, 915, 1023, 1112
BsiHKAI GWGCWC 2 cut(s) 1052, 1065
BsiHKCI CYCGRG 1 cut(s) 497
BslFI GGGAC 2 cut(s) 23, 740
BslI CCNNNNNNNGG 2 cut(s) 298, 474
BsmAI GTCTC 4 cut(s) 248, 657, 873, 1024
BsmBI CGTCTC 1 cut(s) 248
BsmFI GGGAC 2 cut(s) 23, 740
BsmI GAATGC 1 cut(s) 492
BsnI GGCC 2 cut(s) 356, 1136
BsoBI CYCGRG 1 cut(s) 497
Bsp1286I GDGCHC 3 cut(s) 50, 1052, 1065
Bsp13I TCCGGA 1 cut(s) 763
Bsp143I GATC 6 cut(s) 222, 513, 714, 912, 1020, 1109
BspANI GGCC 2 cut(s) 356, 1136
BspEI TCCGGA 1 cut(s) 763
BspFNI CGCG 5 cut(s) 111, 241, 256, 831, 1067
BspLI GGNNCC 5 cut(s) 30, 47, 592, 822, 859
BspMI ACCTGC 1 cut(s) 158
BspPI GGATC 1 cut(s) 521
BspQI GCTCTTC 1 cut(s) 572
BspT107I GGYRCC 5 cut(s) 28, 45, 590, 820, 857
BspTI CTTAAG 1 cut(s) 1214
BsrBI CCGCTC 2 cut(s) 582, 724
BsrDI GCAATG 1 cut(s) 469
BsrFI RCCGGY 3 cut(s) 449, 467, 593
BssAI RCCGGY 3 cut(s) 449, 467, 593
BssECI CCNNGG 3 cut(s) 93, 375, 663
BssMI GATC 6 cut(s) 222, 513, 714, 912, 1020, 1109
BssNI GRCGYC 4 cut(s) 591, 858, 905, 1043
BssT1I CCWWGG 1 cut(s) 375
Bst2UI CCWGG 1 cut(s) 293
Bst4CI ACNGT 4 cut(s) 28, 798, 882, 943
Bst6I CTCTTC 3 cut(s) 181, 381, 572
BstACI GRCGYC 4 cut(s) 591, 858, 905, 1043
BstAFI CTTAAG 1 cut(s) 1214
BstAPI GCANNNNNTGC 1 cut(s) 1033
BstC8I GCNNGC 9 cut(s) 115, 128, 354, 451, 469, 589, 966, 1065, 1181
BstDEI CTNAG 2 cut(s) 180, 1263
BstEII GGTNACC 1 cut(s) 97
BstF5I GGATG 1 cut(s) 117
BstFNI CGCG 5 cut(s) 111, 241, 256, 831, 1067
BstH2I RGCGCY 6 cut(s) 127, 588, 594, 648, 699, 861
BstKTI GATC 6 cut(s) 225, 516, 717, 915, 1023, 1112
BstMAI GTCTC 4 cut(s) 248, 657, 873, 1024
BstMBI GATC 6 cut(s) 222, 513, 714, 912, 1020, 1109
BstMCI CGRYCG 5 cut(s) 109, 687, 915, 1023, 1112
BstNI CCWGG 1 cut(s) 293
BstPI GGTNACC 1 cut(s) 97
BstSCI CCNGG 3 cut(s) 92, 291, 1224
BstSLI GKGCMC 1 cut(s) 50
BstUI CGCG 5 cut(s) 111, 241, 256, 831, 1067
BstV1I GCAGC 6 cut(s) 288, 417, 443, 609, 918, 995
BstX2I RGATCY 1 cut(s) 222
BstYI RGATCY 1 cut(s) 222
BsuRI GGCC 2 cut(s) 356, 1136
BtgZI GCGATG 1 cut(s) 793
BtrI CACGTC 1 cut(s) 64
BtsCI GGATG 1 cut(s) 117
BveI ACCTGC 1 cut(s) 158
Cac8I GCNNGC 9 cut(s) 115, 128, 354, 451, 469, 589, 966, 1065, 1181
CaiI CAGNNNCTG 3 cut(s) 87, 150, 1033
Cfr10I RCCGGY 3 cut(s) 449, 467, 593
Cfr13I GGNCC 2 cut(s) 228, 322
CseI GACGC 2 cut(s) 230, 1032
CsiI ACCWGGT 1 cut(s) 291
Csp6I GTAC 1 cut(s) 191
CviAII CATG 1 cut(s) 163
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 2 cut(s) 180, 1263
DinI GGCGCC 2 cut(s) 592, 859
DpnI GATC 6 cut(s) 224, 515, 716, 914, 1022, 1111
DpnII GATC 6 cut(s) 222, 513, 714, 912, 1020, 1109
DraIII CACNNNGTG 1 cut(s) 1069
EaeI YGGCCR 1 cut(s) 354
Eam1104I CTCTTC 3 cut(s) 181, 381, 572
EarI CTCTTC 3 cut(s) 181, 381, 572
EciI GGCGGA 3 cut(s) 314, 998, 1192
Eco130I CCWWGG 1 cut(s) 375
Eco47I GGWCC 2 cut(s) 228, 322
Eco47III AGCGCT 1 cut(s) 125
Eco57I CTGAAG 2 cut(s) 947, 1058
Eco88I CYCGRG 1 cut(s) 497
Eco91I GGTNACC 1 cut(s) 97
EcoO65I GGTNACC 1 cut(s) 97
EcoRI GAATTC 1 cut(s) 1231
EcoRII CCWGG 1 cut(s) 291
EcoT14I CCWWGG 1 cut(s) 375
EgeI GGCGCC 2 cut(s) 592, 859
EheI GGCGCC 2 cut(s) 592, 859
ErhI CCWWGG 1 cut(s) 375
Esp3I CGTCTC 1 cut(s) 248
FaeI CATG 1 cut(s) 166
FaiI YATR 7 cut(s) 164, 218, 671, 677, 1257, 1275, 1280
FaqI GGGAC 2 cut(s) 23, 740
FatI CATG 1 cut(s) 162
FauI CCCGC 3 cut(s) 163, 717, 957
FblI GTMKAC 1 cut(s) 908
FokI GGATG 1 cut(s) 104
FspBI CTAG 1 cut(s) 845
HaeII RGCGCY 6 cut(s) 127, 588, 594, 648, 699, 861
HaeIII GGCC 2 cut(s) 356, 1136
HgaI GACGC 2 cut(s) 230, 1032
Hin1I GRCGYC 4 cut(s) 591, 858, 905, 1043
Hin1II CATG 1 cut(s) 166
HincII GTYRAC 2 cut(s) 909, 1146
HindII GTYRAC 2 cut(s) 909, 1146
HphI GGTGA 7 cut(s) 91, 571, 850, 964, 1081, 1138, 1240
Hpy166II GTNNAC 4 cut(s) 322, 909, 1146, 1242
Hpy188I TCNGA 7 cut(s) 232, 248, 385, 528, 550, 889, 927
Hpy188III TCNNGA 7 cut(s) 262, 497, 511, 654, 712, 764, 916
Hpy8I GTNNAC 4 cut(s) 322, 909, 1146, 1242
HpyAV CCTTC 7 cut(s) 829, 913, 949, 953, 989, 1033, 1126
HpyCH4III ACNGT 4 cut(s) 28, 798, 882, 943
HpyCH4IV ACGT 2 cut(s) 63, 905
HpyCH4V TGCA 4 cut(s) 90, 166, 1027, 1168
HpyF3I CTNAG 2 cut(s) 180, 1263
HpySE526I ACGT 2 cut(s) 63, 905
Hsp92I GRCGYC 4 cut(s) 591, 858, 905, 1043
Hsp92II CATG 1 cut(s) 166
KasI GGCGCC 2 cut(s) 590, 857
Kpn2I TCCGGA 1 cut(s) 763
KroI GCCGGC 2 cut(s) 449, 467
KroNI GCCGGC 2 cut(s) 451, 469
Kzo9I GATC 6 cut(s) 222, 513, 714, 912, 1020, 1109
LguI GCTCTTC 1 cut(s) 572
LmnI GCTCC 6 cut(s) 301, 338, 477, 1060, 1083, 1105
Lsp1109I GCAGC 6 cut(s) 288, 417, 443, 609, 918, 995
LweI GCATC 3 cut(s) 126, 623, 1155
MabI ACCWGGT 1 cut(s) 291
MaeI CTAG 1 cut(s) 845
MaeII ACGT 2 cut(s) 63, 905
MaeIII GTNAC 3 cut(s) 97, 1069, 1126
MalI GATC 6 cut(s) 224, 515, 716, 914, 1022, 1111
MbiI CCGCTC 2 cut(s) 582, 724
MboI GATC 6 cut(s) 222, 513, 714, 912, 1020, 1109
MboII GAAGA 5 cut(s) 168, 398, 586, 589, 982
MfeI CAATTG 1 cut(s) 1174
MflI RGATCY 1 cut(s) 222
MhlI GDGCHC 3 cut(s) 50, 1052, 1065
MlsI TGGCCA 1 cut(s) 356
MluCI AATT 5 cut(s) 554, 743, 752, 1174, 1231
MluI ACGCGT 1 cut(s) 829
MluNI TGGCCA 1 cut(s) 356
Mly113I GGCGCC 2 cut(s) 591, 858
MlyI GAGTC 8 cut(s) 389, 539, 659, 689, 710, 767, 769, 884
MmeI TCCRAC 4 cut(s) 363, 658, 867, 874
Mox20I TGGCCA 1 cut(s) 356
MreI CGCCGGCG 1 cut(s) 449
MroI TCCGGA 1 cut(s) 763
MroNI GCCGGC 2 cut(s) 449, 467
MscI TGGCCA 1 cut(s) 356
MseI TTAA 2 cut(s) 755, 1215
MslI CAYNNNNRTG 1 cut(s) 26
Msp20I TGGCCA 1 cut(s) 356
MspA1I CMGCKG 1 cut(s) 430
MspCI CTTAAG 1 cut(s) 1214
MspR9I CCNGG 3 cut(s) 94, 293, 1226
MunI CAATTG 1 cut(s) 1174
Mva1269I GAATGC 1 cut(s) 492
MvaI CCWGG 1 cut(s) 293
MvnI CGCG 5 cut(s) 111, 241, 256, 831, 1067
NaeI GCCGGC 2 cut(s) 451, 469
NarI GGCGCC 2 cut(s) 591, 858
NciI CCSGG 2 cut(s) 94, 1226
NdeII GATC 6 cut(s) 222, 513, 714, 912, 1020, 1109
NgoMIV GCCGGC 2 cut(s) 449, 467
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 5 cut(s) 30, 47, 592, 822, 859
NmeAIII GCCGAG 6 cut(s) 57, 644, 673, 724, 745, 834
NmuCI GTSAC 3 cut(s) 97, 1069, 1126
PaeR7I CTCGAG 1 cut(s) 497
PaqCI CACCTGC 1 cut(s) 158
PciSI GCTCTTC 1 cut(s) 572
PcsI WCGNNNNNNNCGW 5 cut(s) 411, 504, 899, 908, 1052
PctI GAATGC 1 cut(s) 492
PdiI GCCGGC 2 cut(s) 451, 469
PfeI GAWTC 7 cut(s) 233, 258, 307, 347, 657, 1075, 1153
Ple19I CGATCG 3 cut(s) 915, 1023, 1112
PleI GAGTC 8 cut(s) 388, 539, 658, 688, 709, 767, 768, 884
PluTI GGCGCC 2 cut(s) 594, 861
PpsI GAGTC 8 cut(s) 388, 539, 658, 688, 709, 767, 768, 884
Psp6I CCWGG 1 cut(s) 291
PspEI GGTNACC 1 cut(s) 97
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 5 cut(s) 30, 47, 592, 822, 859
PspPI GGNCC 2 cut(s) 228, 322
PstNI CAGNNNCTG 3 cut(s) 87, 150, 1033
PsuI RGATCY 1 cut(s) 222
PvuI CGATCG 3 cut(s) 915, 1023, 1112
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
RseI CAYNNNNRTG 1 cut(s) 26
SalI GTCGAC 1 cut(s) 907
SapI GCTCTTC 1 cut(s) 572
SaqAI TTAA 2 cut(s) 755, 1215
Sau3AI GATC 6 cut(s) 222, 513, 714, 912, 1020, 1109
Sau96I GGNCC 2 cut(s) 228, 322
SchI GAGTC 8 cut(s) 389, 539, 659, 689, 710, 767, 769, 884
ScrFI CCNGG 3 cut(s) 94, 293, 1226
SduI GDGCHC 3 cut(s) 50, 1052, 1065
SexAI ACCWGGT 1 cut(s) 291
SfaNI GCATC 3 cut(s) 126, 623, 1155
SfoI GGCGCC 2 cut(s) 592, 859
Sfr274I CTCGAG 1 cut(s) 497
SgrAI CRCCGGYG 2 cut(s) 449, 593
SgrDI CGTCGACG 1 cut(s) 907
SinI GGWCC 2 cut(s) 228, 322
SlaI CTCGAG 1 cut(s) 497
SmiMI CAYNNNNRTG 1 cut(s) 26
SmlI CTYRAG 2 cut(s) 497, 1214
SmoI CTYRAG 2 cut(s) 497, 1214
SpeI ACTAGT 1 cut(s) 844
Sse9I AATT 5 cut(s) 554, 743, 752, 1174, 1231
SspDI GGCGCC 2 cut(s) 590, 857
SspMI CTAG 1 cut(s) 845
StyD4I CCNGG 3 cut(s) 92, 291, 1224
StyI CCWWGG 1 cut(s) 375
TaaI ACNGT 4 cut(s) 28, 798, 882, 943
TaiI ACGT 2 cut(s) 66, 908
TaqII GACCGA 1 cut(s) 673
TasI AATT 5 cut(s) 554, 743, 752, 1174, 1231
TauI GCSGC 4 cut(s) 430, 456, 462, 585
TfiI GAWTC 7 cut(s) 233, 258, 307, 347, 657, 1075, 1153
Tru1I TTAA 2 cut(s) 755, 1215
Tru9I TTAA 2 cut(s) 755, 1215
TseFI GTSAC 3 cut(s) 97, 1069, 1126
TseI GCWGC 6 cut(s) 276, 430, 456, 622, 931, 1008
Tsp45I GTSAC 3 cut(s) 97, 1069, 1126
TspDTI ATGAA 2 cut(s) 83, 509
TspGWI ACGGA 2 cut(s) 744, 1073
Vha464I CTTAAG 1 cut(s) 1214
VpaK11BI GGWCC 2 cut(s) 228, 322
XapI RAATTY 1 cut(s) 1231
XhoI CTCGAG 1 cut(s) 497
XmiI GTMKAC 1 cut(s) 908
XspI CTAG 1 cut(s) 845
ZraI GACGTC 1 cut(s) 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.