Rh5CG288600

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000136
Physical Location & Seq
Reverse (-)
31590036 .. 31591754
1719 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG288600.1

Sequence Viewer

Length: 780 bp
ATGGATAAGATGTCAAGATGGAGGGACTGGAAGTGCCGAGTCAAGACACAATGGTATGATAAATATGAAACGGATGAGCAGCGATTAACATTCATTCCTAGTCAGGTTGTTGGAGAGCAATGGAAGATATTAGTAAAGTATTGGGGTCTTCCGCAAATAAAGGAAATGTGTGAGACAAATAAATCTAGCCGTGCACAAGGAGGAGGTGTCCCTCATAGGACCGGTCGAAAATCTTTTGCTAGACTACGAAAAGAGATGATGGAGAATGGAGAGAAAACAGATCGTGTCAGCATGTTTGTCAAAACAAGAGCAATGAAAACAAAGGATGATGATGGTCAACCAATTGAAATTCATGATGATGAGGCTACTGCTGTTATTAGTCAATTCAATGAATATTTGGAGGAGAGGCCAGAAGATGAACAAGATGATACTTTTCGTGAAGAGGTATTCACTAAAGTGATGGGAGAAGATGCACATGGACGTGTTCGCATGTATGGAACAGGTGTAACTCCATCTCAAGTGTTTGGTAATTCCAAAGCTTATGAGACTAATGAGAAAAGGACAATTGAGGAAATGGAAAGAAAATACAAGGAAATGGAAAAGAACTATCAGACAAAGCTAGATGATCTTAAATTGAGCCATGAATCTCAATTGGGAGACATGAAATTAAAGTACGATGATGTATCGAATCGTCTTAATCTTTTGATGGTTCATGTTGGTATCCAAGTAAACCCAAGTGGAAGTACAAGTGAACAGGTTGGAGAAATATCTAGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23 Transposase_24

Protein Analysis

259

Amino Acids

30.33

Weight (kDa)

5.88

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 39 - 171 1.1e-26 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 152
AcsI RAATTY 1 cut(s) 348
AfaI GTAC 2 cut(s) 674, 745
AflIII ACRYGT 1 cut(s) 481
AgeI ACCGGT 1 cut(s) 221
AgsI TTSAA 2 cut(s) 347, 388
AjiI CACGTC 1 cut(s) 482
AleI CACNNNNGTG 1 cut(s) 455
AluBI AGCT 2 cut(s) 539, 619
AluI AGCT 2 cut(s) 539, 619
Alw21I GWGCWC 1 cut(s) 196
Alw26I GTCTC 3 cut(s) 167, 539, 651
Alw44I GTGCAC 1 cut(s) 192
AoxI GGCC 1 cut(s) 407
ApaLI GTGCAC 1 cut(s) 192
ApeKI GCWGC 1 cut(s) 79
ApoI RAATTY 1 cut(s) 348
AsiGI ACCGGT 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 219
AvaII GGWCC 1 cut(s) 219
BaeGI GKGCMC 1 cut(s) 196
BbsI GAAGAC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 196
BbvI GCAGC 1 cut(s) 91
BccI CCATC 6 cut(s) 12, 253, 326, 454, 520, 700
BceAI ACGGC 1 cut(s) 174
BciVI GTATCC 1 cut(s) 731
BcoDI GTCTC 3 cut(s) 167, 539, 651
BfaI CTAG 5 cut(s) 99, 186, 240, 620, 771
BfuI GTATCC 1 cut(s) 731
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
Bme18I GGWCC 1 cut(s) 219
BmgBI CACGTC 1 cut(s) 482
BmgT120I GGNCC 1 cut(s) 219
BmsI GCATC 1 cut(s) 460
BpiI GAAGAC 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 501
BsaWI WCCGGW 1 cut(s) 221
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 1 cut(s) 32
Bse3DI GCAATG 2 cut(s) 125, 318
BseGI GGATG 2 cut(s) 79, 331
BseMI GCAATG 2 cut(s) 125, 318
BseNI ACTGG 1 cut(s) 32
BseRI GAGGAG 2 cut(s) 216, 416
BseSI GKGCMC 1 cut(s) 196
BseXI GCAGC 1 cut(s) 91
Bsh1285I CGRYCG 1 cut(s) 226
BshFI GGCC 1 cut(s) 409
BshTI ACCGGT 1 cut(s) 221
BsiEI CGRYCG 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 196
BsiSI CCGG 1 cut(s) 222
BslFI GGGAC 2 cut(s) 38, 194
BsmAI GTCTC 3 cut(s) 167, 539, 651
BsmFI GGGAC 2 cut(s) 38, 194
BsnI GGCC 1 cut(s) 409
Bsp1286I GDGCHC 1 cut(s) 196
Bsp143I GATC 2 cut(s) 280, 625
BspACI CCGC 1 cut(s) 152
BspANI GGCC 1 cut(s) 409
BspHI TCATGA 1 cut(s) 352
BsrDI GCAATG 2 cut(s) 125, 318
BsrFI RCCGGY 1 cut(s) 221
BsrI ACTGG 1 cut(s) 32
BssAI RCCGGY 1 cut(s) 221
BssMI GATC 2 cut(s) 280, 625
Bst6I CTCTTC 1 cut(s) 435
BstF5I GGATG 2 cut(s) 79, 331
BstKTI GATC 2 cut(s) 283, 628
BstMAI GTCTC 3 cut(s) 167, 539, 651
BstMBI GATC 2 cut(s) 280, 625
BstMCI CGRYCG 1 cut(s) 226
BstNSI RCATGY 2 cut(s) 295, 493
BstSLI GKGCMC 1 cut(s) 196
BstV1I GCAGC 1 cut(s) 91
BstV2I GAAGAC 1 cut(s) 140
BsuI GTATCC 1 cut(s) 731
BsuRI GGCC 1 cut(s) 409
BtrI CACGTC 1 cut(s) 482
BtsCI GGATG 2 cut(s) 79, 331
CciI TCATGA 1 cut(s) 352
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 219
Csp6I GTAC 2 cut(s) 673, 744
CspAI ACCGGT 1 cut(s) 221
CviAII CATG 7 cut(s) 292, 353, 476, 490, 641, 661, 713
CviJI RGCY 6 cut(s) 189, 365, 409, 539, 619, 639
CviKI_1 RGCY 6 cut(s) 189, 365, 409, 539, 619, 639
CviQI GTAC 2 cut(s) 673, 744
DpnI GATC 2 cut(s) 282, 627
DpnII GATC 2 cut(s) 280, 625
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
Eco47I GGWCC 1 cut(s) 219
FaeI CATG 7 cut(s) 295, 356, 479, 493, 644, 664, 716
FaqI GGGAC 2 cut(s) 38, 194
FatI CATG 7 cut(s) 291, 352, 475, 489, 640, 660, 712
Fnu4HI GCNGC 1 cut(s) 80
FokI GGATG 2 cut(s) 86, 338
Fsp4HI GCNGC 1 cut(s) 80
FspBI CTAG 5 cut(s) 99, 186, 240, 620, 771
GluI GCNGC 1 cut(s) 80
HaeIII GGCC 1 cut(s) 409
HapII CCGG 1 cut(s) 222
Hin1II CATG 7 cut(s) 295, 356, 479, 493, 644, 664, 716
HincII GTYRAC 1 cut(s) 338
HindII GTYRAC 1 cut(s) 338
HindIII AAGCTT 1 cut(s) 537
HinfI GANTC 3 cut(s) 39, 644, 688
HpaII CCGG 1 cut(s) 222
Hpy166II GTNNAC 4 cut(s) 194, 338, 730, 752
Hpy188I TCNGA 1 cut(s) 612
Hpy188III TCNNGA 4 cut(s) 15, 43, 353, 437
Hpy8I GTNNAC 4 cut(s) 194, 338, 730, 752
HpyCH4IV ACGT 1 cut(s) 481
HpyCH4V TGCA 2 cut(s) 194, 473
HpySE526I ACGT 1 cut(s) 481
Hsp92II CATG 7 cut(s) 295, 356, 479, 493, 644, 664, 716
Kzo9I GATC 2 cut(s) 280, 625
LpnPI CCDG 6 cut(s) 13, 89, 235, 423, 486, 740
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 1 cut(s) 460
MaeI CTAG 5 cut(s) 99, 186, 240, 620, 771
MaeII ACGT 1 cut(s) 481
MaeIII GTNAC 1 cut(s) 505
MalI GATC 2 cut(s) 282, 627
MboI GATC 2 cut(s) 280, 625
MboII GAAGA 5 cut(s) 136, 140, 425, 452, 479
MfeI CAATTG 3 cut(s) 342, 564, 650
MhlI GDGCHC 1 cut(s) 196
MluCI AATT 8 cut(s) 342, 348, 383, 529, 564, 632, 650, 665
MlyI GAGTC 1 cut(s) 48
MmeI TCCRAC 2 cut(s) 91, 739
MnlI CCTC 9 cut(s) 15, 194, 197, 222, 355, 394, 399, 436, 562
MseI TTAA 4 cut(s) 86, 630, 668, 696
MslI CAYNNNNRTG 3 cut(s) 357, 455, 480
MspI CCGG 1 cut(s) 222
MunI CAATTG 3 cut(s) 342, 564, 650
NdeII GATC 2 cut(s) 280, 625
NlaIII CATG 7 cut(s) 295, 356, 479, 493, 644, 664, 716
NmeAIII GCCGAG 1 cut(s) 62
NspI RCATGY 2 cut(s) 295, 493
OliI CACNNNNGTG 1 cut(s) 455
PagI TCATGA 1 cut(s) 352
PfeI GAWTC 2 cut(s) 644, 688
PinAI ACCGGT 1 cut(s) 221
PkrI GCNGC 1 cut(s) 81
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PspPI GGNCC 1 cut(s) 219
RsaI GTAC 2 cut(s) 674, 745
RsaNI GTAC 2 cut(s) 673, 744
RseI CAYNNNNRTG 3 cut(s) 357, 455, 480
SaqAI TTAA 4 cut(s) 86, 630, 668, 696
SatI GCNGC 1 cut(s) 80
Sau3AI GATC 2 cut(s) 280, 625
Sau96I GGNCC 1 cut(s) 219
SchI GAGTC 1 cut(s) 48
SduI GDGCHC 1 cut(s) 196
SetI ASST 8 cut(s) 108, 208, 447, 484, 505, 541, 621, 759
SfaNI GCATC 1 cut(s) 460
SinI GGWCC 1 cut(s) 219
SmiMI CAYNNNNRTG 3 cut(s) 357, 455, 480
SmlI CTYRAG 1 cut(s) 516
SmoI CTYRAG 1 cut(s) 516
Sse9I AATT 8 cut(s) 342, 348, 383, 529, 564, 632, 650, 665
SsiI CCGC 1 cut(s) 152
SspI AATATT 1 cut(s) 395
SspMI CTAG 5 cut(s) 99, 186, 240, 620, 771
TaiI ACGT 1 cut(s) 484
TaqI TCGA 2 cut(s) 226, 686
TasI AATT 8 cut(s) 342, 348, 383, 529, 564, 632, 650, 665
TatI WGTACW 1 cut(s) 743
TfiI GAWTC 2 cut(s) 644, 688
Tru1I TTAA 4 cut(s) 86, 630, 668, 696
Tru9I TTAA 4 cut(s) 86, 630, 668, 696
TseI GCWGC 1 cut(s) 79
TspDTI ATGAA 9 cut(s) 81, 82, 329, 341, 405, 432, 657, 677, 701
TspGWI ACGGA 1 cut(s) 86
VneI GTGCAC 1 cut(s) 192
VpaK11BI GGWCC 1 cut(s) 219
XapI RAATTY 1 cut(s) 348
XceI RCATGY 2 cut(s) 295, 493
XspI CTAG 5 cut(s) 99, 186, 240, 620, 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.