Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000136

Physical Location & Seq

Genomic Coordinates Reverse (-)

27539014 .. 27540221

Gene Structure 1208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g37421.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAGATGGAACAAAGTGGAGAAGAATCTGATAAATTTAGTGTGGAAAAAAGCACGCAAAGAATCCAATCCAGAAGTTGCCCAAGTCATTAACGAATACAACAGGAAACTGTCACTGGTGAGACCAGTGGAAGACCAAAAGCTTATAGCTGTAAAAGACCGTGTTTTTCATGATGTTATCGGAGAGGATGGTCATTGTTATTGTCATACATATGGTTCTACTGTGCCTCGCAATTTGGTATATCCACAAGAACCATTGGAAACTGCTGGTAACAATGACCTTATAGCCAAAATCACTGAAGTGGTAACAGAGAAACTGAAAGAGTATTTCGATAAAAAATTGGAGAATGCTATTAAAATGCTTCAAGCTCAGATTGCCAATAATATGGATTGCACAATTGCACATGGGGGAAGAAACACAATTGCACATGGACTAGTACCAGCTGATGTAACAAGTGGCCATGAGGCTAGGAGGGAGTCCATAGGAGAGGGAGATCCTGAAGCCACTGCCAATTTTGATTCAACTTCTGATGATGTCATTGGTCACCATGATGCTCCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0008150 GO:0008152 GO:0009850 GO:0009987 GO:0010178 GO:0010179 GO:0010817 GO:0012505 GO:0016787 GO:0016810 GO:0042445 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

188

Amino Acids

20.91

Weight (kDa)

5.75

Isoelectric Point (pI)

35.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000136)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica	MD16G1158000.v1.1
prunus_persica	Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata	RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora	Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa	Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha	Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana	Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	488
AcoI	YGGCCR	1 cut(s)	457
AcsI	RAATTY	1 cut(s)	34
AcuI	CTGAAG	2 cut(s)	318, 519
AfaI	GTAC	1 cut(s)	438
AgsI	TTSAA	2 cut(s)	365, 522
AhlI	ACTAGT	1 cut(s)	433
AleI	CACNNNNGTG	1 cut(s)	299
AluBI	AGCT	4 cut(s)	142, 149, 368, 443
AluI	AGCT	4 cut(s)	142, 149, 368, 443
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	1 cut(s)	488
AoxI	GGCC	1 cut(s)	457
ApoI	RAATTY	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	130, 536
BalI	TGGCCA	1 cut(s)	459
BbsI	GAAGAC	1 cut(s)	138
BccI	CCATC	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	115
BcuI	ACTAGT	1 cut(s)	433
BfaI	CTAG	2 cut(s)	434, 468
BmsI	GCATC	1 cut(s)	541
BpiI	GAAGAC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	115
Bse1I	ACTGG	2 cut(s)	120, 125
BseGI	GGATG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	383
BseNI	ACTGG	2 cut(s)	120, 125
BshFI	GGCC	1 cut(s)	459
BsmAI	GTCTC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	1 cut(s)	459
Bso31I	GGTCTC	1 cut(s)	115
Bsp143I	GATC	1 cut(s)	493
BspANI	GGCC	1 cut(s)	459
BspCNI	CTCAG	1 cut(s)	382
BspHI	TCATGA	1 cut(s)	169
BspPI	GGATC	1 cut(s)	488
BspTNI	GGTCTC	1 cut(s)	115
BsrI	ACTGG	2 cut(s)	120, 125
BssMI	GATC	1 cut(s)	493
Bst4CI	ACNGT	3 cut(s)	111, 161, 223
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	1 cut(s)	369
BstEII	GGTNACC	1 cut(s)	542
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	1 cut(s)	496
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	493
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstPI	GGTNACC	1 cut(s)	542
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	493
BstXI	CCANNNNNNTGG	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	493
BsuRI	GGCC	1 cut(s)	459
BtsCI	GGATG	1 cut(s)	193
BtsI	GCAGTG	1 cut(s)	504
BtsIMutI	CAGTG	4 cut(s)	113, 132, 294, 504
Cac8I	GCNNGC	1 cut(s)	55
CciI	TCATGA	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	437
CviAII	CATG	5 cut(s)	170, 404, 428, 461, 548
CviJI	RGCY	8 cut(s)	142, 149, 287, 368, 443, 459, 467, 503
CviKI_1	RGCY	8 cut(s)	142, 149, 287, 368, 443, 459, 467, 503
CviQI	GTAC	1 cut(s)	437
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	1 cut(s)	495
DpnII	GATC	1 cut(s)	493
EaeI	YGGCCR	1 cut(s)	457
Eco31I	GGTCTC	1 cut(s)	115
Eco57I	CTGAAG	2 cut(s)	318, 519
Eco91I	GGTNACC	1 cut(s)	542
EcoO65I	GGTNACC	1 cut(s)	542
FaeI	CATG	5 cut(s)	173, 407, 431, 464, 551
FatI	CATG	5 cut(s)	169, 403, 427, 460, 547
FauNDI	CATATG	1 cut(s)	211
FokI	GGATG	1 cut(s)	200
FspBI	CTAG	2 cut(s)	434, 468
HaeIII	GGCC	1 cut(s)	459
Hin1II	CATG	5 cut(s)	173, 407, 431, 464, 551
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	4 cut(s)	25, 62, 476, 518
HphI	GGTGA	2 cut(s)	130, 536
Hpy188I	TCNGA	4 cut(s)	30, 182, 372, 529
Hpy188III	TCNNGA	3 cut(s)	71, 170, 497
HpyCH4III	ACNGT	3 cut(s)	111, 161, 223
HpyCH4V	TGCA	4 cut(s)	393, 401, 425, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	1 cut(s)	369
Hsp92II	CATG	5 cut(s)	173, 407, 431, 464, 551
Kzo9I	GATC	1 cut(s)	493
LmnI	GCTCC	1 cut(s)	559
LpnPI	CCDG	7 cut(s)	84, 88, 101, 138, 252, 453, 510
LweI	GCATC	1 cut(s)	541
MaeI	CTAG	2 cut(s)	434, 468
MaeIII	GTNAC	5 cut(s)	111, 269, 304, 448, 542
MalI	GATC	1 cut(s)	495
MboI	GATC	1 cut(s)	493
MboII	GAAGA	3 cut(s)	34, 143, 423
MfeI	CAATTG	2 cut(s)	396, 420
MflI	RGATCY	1 cut(s)	493
MlsI	TGGCCA	1 cut(s)	459
MluCI	AATT	6 cut(s)	34, 232, 338, 396, 420, 511
MluNI	TGGCCA	1 cut(s)	459
MlyI	GAGTC	1 cut(s)	485
MnlI	CCTC	5 cut(s)	178, 237, 457, 465, 481
Mox20I	TGGCCA	1 cut(s)	459
MscI	TGGCCA	1 cut(s)	459
MseI	TTAA	2 cut(s)	90, 354
MslI	CAYNNNNRTG	3 cut(s)	210, 299, 549
Msp20I	TGGCCA	1 cut(s)	459
MspA1I	CMGCKG	1 cut(s)	443
MunI	CAATTG	2 cut(s)	396, 420
Mva1269I	GAATGC	1 cut(s)	352
MwoI	GCNNNNNNNGC	1 cut(s)	374
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	1 cut(s)	493
NlaIII	CATG	5 cut(s)	173, 407, 431, 464, 551
NmuCI	GTSAC	2 cut(s)	111, 542
OliI	CACNNNNGTG	1 cut(s)	299
PagI	TCATGA	1 cut(s)	169
PctI	GAATGC	1 cut(s)	352
PfeI	GAWTC	3 cut(s)	25, 62, 518
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
PspEI	GGTNACC	1 cut(s)	542
PsuI	RGATCY	1 cut(s)	493
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	1 cut(s)	438
RsaNI	GTAC	1 cut(s)	437
RseI	CAYNNNNRTG	3 cut(s)	210, 299, 549
SaqAI	TTAA	2 cut(s)	90, 354
Sau3AI	GATC	1 cut(s)	493
SchI	GAGTC	1 cut(s)	485
SetI	ASST	5 cut(s)	144, 151, 282, 370, 445
SfaNI	GCATC	1 cut(s)	541
SmiMI	CAYNNNNRTG	3 cut(s)	210, 299, 549
SpeI	ACTAGT	1 cut(s)	433
Sse9I	AATT	6 cut(s)	34, 232, 338, 396, 420, 511
SspMI	CTAG	2 cut(s)	434, 468
TaaI	ACNGT	3 cut(s)	111, 161, 223
TaqI	TCGA	1 cut(s)	330
TasI	AATT	6 cut(s)	34, 232, 338, 396, 420, 511
TfiI	GAWTC	3 cut(s)	25, 62, 518
Tru1I	TTAA	2 cut(s)	90, 354
Tru9I	TTAA	2 cut(s)	90, 354
TscAI	CASTG	4 cut(s)	120, 132, 301, 511
TseFI	GTSAC	2 cut(s)	111, 542
Tsp45I	GTSAC	2 cut(s)	111, 542
TspDTI	ATGAA	1 cut(s)	158
TspRI	CASTG	4 cut(s)	120, 132, 301, 511
XapI	RAATTY	1 cut(s)	34
XspI	CTAG	2 cut(s)	434, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.