FvH4_1g28182

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000136
Physical Location & Seq
Reverse (-)
20023821 .. 20025010
1190 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g28182.t1

Sequence Viewer

Length: 1098 bp
ATGGACAAGTCATGGATTGATTGGGGAACTAGATGTTCTAAGCCATACTATGAGAAGTTAGATGAGTTCTTGTCCTTTGCATCTGCTAGTAGAGATATAAGTTCTAGGATATATTGTCCTTGTAGAAAATGCGAAAATCGTGATTTATTTGTAATAGATATTGTGCGAGAGCATCTTCGAGATAATGGGTTTTGGAAGAAGTATAAGATATGGGAGAAACATGGTGAGTCTAGGGATTATGATGGCTCACTGCATAGGGAGGAAGCTCTTTTGGGGTCAGACGATTATATGGATGTAGATATGGTTCGACTAGTCGAAGAAGCTCTAGGAACTGCACATGTTACAAGACCAGATGCTGAGAATGGTGGCGAAGAAAATTCAAATCCTCTTGCTGGTGGCCCAAATGAGTCTACTAAAGAGTTCTTGAAATTAATGAAAGGTGCAAACCAGCCACTATATCCAGGTTCTAAGAAGCATACAGCCTTGTCATTCATTGTCCGAATTCTAGAAGCAAAGGTGTCAAATGGATGGTCTGACACTTCTTTCAAGGATCTGCTTGATATATTTGAGGAGTCTATGCCAAAAGGTGTAAACCTTCCTAAATCCTATAATGAAGCTCAGAAGTTAACAAAGGATTTAGGCTTCACTTACTACACAGTGGATGCTCGCCCTAATAGTTGTATGCTATTCCGAAATGGGAGCGATGTAGATCTTGACAATTGTTTGATATGTAATGCATCTCGGTGGAAAGATAATAATGTTGATGGAGGTTTAGAGCTTGCTACCCTTATGAGATGGCATGCTGAGAAACGAACAGATGATGGTGTGTTTAGGCATCTGGCAGATTCTCTTGCGTGGAAGGATTTTGACAGCAAACACTCAAGTTTCTCTGCTGATATTCGGAATGTAAGGCTTGGCTTGGCCTCAGATGGATTTAATCCATTTAGAACTATGACTATACCTCATAGTACTTGGCCCATCATACTGGTTCCATACAACTTACCGCCAACATTGTTGATGAAGCAGCCTTATATCTATCTGTCTGTGCTTATTGATGGACCACAAGCTCCTGGTGATAAGATTGATGTGTACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

366

Amino Acids

41.62

Weight (kDa)

5.56

Isoelectric Point (pI)

29.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 3 - 76 1.1e-17 Transposase-associated domain
Transposase_21 PF02992 274 - 365 1.7e-38 Transposase family tnp2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000136)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28181 FvH4_1g28182 FvH4_1g28940 FvH4_1g29801 FvH4_1g29802 FvH4_3g03321 FvH4_3g12341 FvH4_3g22002 FvH4_3g22003 FvH4_3g22852 FvH4_3g22860 FvH4_3g32806 FvH4_4g02410 FvH4_4g08110 FvH4_4g09791 FvH4_4g09792 FvH4_4g09830 FvH4_4g09831 FvH4_4g09832 FvH4_4g23330 FvH4_5g25220 FvH4_5g30160 FvH4_5g32340 FvH4_5g37421 FvH4_6g21851 FvH4_6g21852 FvH4_6g22855 FvH4_6g22870 FvH4_6g30440 FvH4_6g30962 FvH4_6g37930
malus_domestica MD16G1158000.v1.1
prunus_persica Prupe.1G266000_v2.0.a1 Prupe.1G266100_v2.0.a1 Prupe.1G266200_v2.0.a1 Prupe.2G006600_v2.0.a1 Prupe.2G110300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322121 RchiOBHm_Chr1g0322131 RchiOBHm_Chr1g0341871 RchiOBHm_Chr1g0346721 RchiOBHm_Chr2g0118081 RchiOBHm_Chr2g0138651 RchiOBHm_Chr3g0468651 RchiOBHm_Chr3g0475981 RchiOBHm_Chr4g0416921 RchiOBHm_Chr5g0068021 RchiOBHm_Chr6g0273901 RchiOBHm_Chr6g0278661 RchiOBHm_Chr6g0281481 RchiOBHm_Chr6g0306081 RchiOBHm_Chr6g0306091 RchiOBHm_Chr7g0220731 RchiOBHm_Chr7g0220741 RchiOBHm_Chr7g0222641 RchiOBHm_Chr7g0225401 RchiOBHm_Chr7g0230481
rosa_laevigata RLG00000001569 RLG00000006184 RLG00000007906 RLG00000009863 RLG00000011359 RLG00000016125 RLG00000018543 RLG00000020693 RLG00000029658 RLG00000029716
rosa_multiflora Rmu_co8244591.1_g000001 Rmu_co8396391.1_g000001 Rmu_sc0000120.1_g000013 Rmu_sc0000239.1_g000047 Rmu_sc0000252.1_g000019 Rmu_sc0000322.1_g000037 Rmu_sc0000376.1_g000010 Rmu_sc0000435.1_g000033 Rmu_sc0001872.1_g000001 Rmu_sc0001992.1_g000011 Rmu_sc0001992.1_g000012 Rmu_sc0002231.1_g000010 Rmu_sc0002372.1_g000033 Rmu_sc0002705.1_g000012 Rmu_sc0003435.1_g000015 Rmu_sc0004084.1_g000042 Rmu_sc0004084.1_g000043 Rmu_sc0004755.1_g000011 Rmu_sc0005391.1_g000010 Rmu_sc0005970.1_g000001 Rmu_sc0006163.1_g000003 Rmu_sc0006422.1_g000004 Rmu_sc0006422.1_g000005 Rmu_sc0006952.1_g000002 Rmu_sc0010937.1_g000007 Rmu_sc0012130.1_g000008 Rmu_sc0024120.1_g000001 Rmu_sc0035618.1_g000001
rosa_roxburghii Rroxscaffold_1G00039230 Rroxscaffold_2G00085900 Rroxscaffold_2G00085910 Rroxscaffold_2G00125240 Rroxscaffold_2G00126850 Rroxscaffold_2G00150980 Rroxscaffold_3G00230580 Rroxscaffold_3G00245050 Rroxscaffold_4G00320680 Rroxscaffold_4G00328800 Rroxscaffold_5G00349640 Rroxscaffold_6G00406600 Rroxscaffold_7G00165570 Rroxscaffold_7G00191490 Rroxscaffold_7G00192700 Rroxscaffold_7G00192710 Rroxscaffold_7G00201190 Rroxscaffold_7G00201620
rosa_rugosa Rorug01G0033100 Rorug01G0089100 Rorug01G0102000 Rorug01G0353100 Rorug01G0353200 Rorug01G0353300 Rorug02G0276900 Rorug02G0362200 Rorug02G0445100 Rorug02G0627600 Rorug02G0627600 Rorug02G0627600 Rorug03G0267700 Rorug03G0267800 Rorug03G0327400 Rorug04G0004500 Rorug04G0006700 Rorug04G0061500 Rorug04G0064700 Rorug04G0073300 Rorug04G0094300 Rorug04G0181200 Rorug04G0181200 Rorug04G0330100 Rorug05G0035600 Rorug05G0038600 Rorug05G0201600 Rorug05G0367700 Rorug05G0407600 Rorug05G0407700 Rorug05G0543400 Rorug06G0012200 Rorug06G0363700.1 Rorug07G0085100
rosa_samantha Rh1AG049700 Rh1AG182700 Rh1AG182800 Rh1BG015500 Rh1BG398700 Rh1BG409100 Rh1CG074100 Rh1CG169200 Rh1CG169300 Rh1CG169400 Rh1DG130800 Rh1DG130900 Rh1DG440400 Rh2DG440900 Rh3AG144700 Rh3BG167100 Rh3DG366800 Rh4AG214400 Rh4BG189700 Rh4BG189800 Rh4CG268600 Rh4DG004400 Rh4DG147900 Rh4DG248300 Rh5AG053900 Rh5AG054000 Rh5AG317200 Rh5AG326400 Rh5AG332600 Rh5AG419700 Rh5CG284900 Rh5CG288600 Rh6AG252700 Rh6AG252800 Rh6AG256900 Rh6AG257000 Rh6AG257500 Rh6BG175300 Rh6DG226200 Rh6DG264500 Rh7AG374000 Rh7AG398100 Rh7BG274900 Rh7BG300500 Rh7BG308200 Rh7BG451200
rosa_wichuraiana Rw1G015860 Rw1G022160 Rw3G016160 Rw3G021170 Rw4G006020 Rw4G008740 Rw5G027400 Rw5G031840 Rw5G036940 Rw6G008320 Rw6G030330 Rw7G033450

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 410
AciI CCGC 1 cut(s) 1004
AclWI GGATC 1 cut(s) 558
AcsI RAATTY 2 cut(s) 376, 501
AfaI GTAC 2 cut(s) 970, 1091
AfiI CCNNNNNNNGG 1 cut(s) 392
AflIII ACRYGT 1 cut(s) 337
AgsI TTSAA 3 cut(s) 381, 427, 547
AhlI ACTAGT 1 cut(s) 310
AjnI CCWGG 2 cut(s) 460, 1069
AluBI AGCT 5 cut(s) 266, 323, 617, 778, 1067
AluI AGCT 5 cut(s) 266, 323, 617, 778, 1067
AlwI GGATC 1 cut(s) 558
AlwNI CAGNNNCTG 1 cut(s) 356
AoxI GGCC 3 cut(s) 397, 921, 974
ApeKI GCWGC 1 cut(s) 1024
ApoI RAATTY 2 cut(s) 376, 501
ArsI GACNNNNNNTTYG 2 cut(s) 515, 547
AseI ATTAAT 1 cut(s) 431
AspS9I GGNCC 3 cut(s) 398, 975, 1058
AsuHPI GGTGA 2 cut(s) 236, 1085
AvaII GGWCC 1 cut(s) 1058
BbvI GCAGC 1 cut(s) 1036
BccI CCATC 8 cut(s) 236, 522, 758, 789, 815, 923, 986, 1049
BciT130I CCWGG 2 cut(s) 462, 1071
BcuI ACTAGT 1 cut(s) 310
BfaI CTAG 7 cut(s) 30, 87, 105, 231, 311, 326, 506
BglII AGATCT 1 cut(s) 709
BisI GCNGC 1 cut(s) 1025
BlsI GCNGC 1 cut(s) 1026
BmcAI AGTACT 1 cut(s) 970
Bme1390I CCNGG 2 cut(s) 462, 1071
Bme18I GGWCC 1 cut(s) 1058
BmgT120I GGNCC 3 cut(s) 398, 975, 1058
BmiI GGNNCC 1 cut(s) 990
BmrFI CCNGG 2 cut(s) 462, 1071
BmsI GCATC 6 cut(s) 89, 181, 343, 652, 746, 844
BpuEI CTTGAG 1 cut(s) 865
BsaBI GATNNNNATC 1 cut(s) 708
Bsc4I CCNNNNNNNGG 1 cut(s) 392
Bse1I ACTGG 1 cut(s) 990
Bse8I GATNNNNATC 1 cut(s) 708
BseBI CCWGG 2 cut(s) 462, 1071
BseGI GGATG 3 cut(s) 298, 533, 667
BseJI GATNNNNATC 1 cut(s) 708
BseLI CCNNNNNNNGG 1 cut(s) 392
BseMII CTCAG 4 cut(s) 348, 632, 795, 939
BseNI ACTGG 1 cut(s) 990
BseRI GAGGAG 1 cut(s) 584
BseXI GCAGC 1 cut(s) 1036
BsgI GTGCAG 1 cut(s) 318
BshFI GGCC 3 cut(s) 399, 923, 976
BslI CCNNNNNNNGG 1 cut(s) 392
BsnI GGCC 3 cut(s) 399, 923, 976
Bsp143I GATC 2 cut(s) 550, 709
BspACI CCGC 1 cut(s) 1004
BspANI GGCC 3 cut(s) 399, 923, 976
BspCNI CTCAG 4 cut(s) 349, 631, 796, 938
BspLI GGNNCC 1 cut(s) 990
BspPI GGATC 1 cut(s) 558
BsrI ACTGG 1 cut(s) 990
BssMI GATC 2 cut(s) 550, 709
Bst2UI CCWGG 2 cut(s) 462, 1071
Bst4CI ACNGT 1 cut(s) 658
BstC8I GCNNGC 3 cut(s) 667, 780, 801
BstDEI CTNAG 6 cut(s) 39, 357, 468, 618, 804, 925
BstF5I GGATG 3 cut(s) 298, 533, 667
BstKTI GATC 2 cut(s) 553, 712
BstMBI GATC 2 cut(s) 550, 709
BstNI CCWGG 2 cut(s) 462, 1071
BstNSI RCATGY 2 cut(s) 341, 803
BstSCI CCNGG 2 cut(s) 460, 1069
BstV1I GCAGC 1 cut(s) 1036
BstX2I RGATCY 2 cut(s) 550, 709
BstXI CCANNNNNNTGG 1 cut(s) 985
BstYI RGATCY 2 cut(s) 550, 709
BsuRI GGCC 3 cut(s) 399, 923, 976
BtgZI GCGATG 1 cut(s) 717
BtsCI GGATG 3 cut(s) 298, 533, 667
BtsI GCAGTG 1 cut(s) 248
BtsIMutI CAGTG 2 cut(s) 248, 663
Cac8I GCNNGC 3 cut(s) 667, 780, 801
CaiI CAGNNNCTG 1 cut(s) 356
Cfr13I GGNCC 3 cut(s) 398, 975, 1058
Csp6I GTAC 2 cut(s) 969, 1090
CviAII CATG 4 cut(s) 12, 221, 338, 800
CviQI GTAC 2 cut(s) 969, 1090
DdeI CTNAG 6 cut(s) 39, 357, 468, 618, 804, 925
DpnI GATC 2 cut(s) 552, 711
DpnII GATC 2 cut(s) 550, 709
Eco47I GGWCC 1 cut(s) 1058
EcoRI GAATTC 1 cut(s) 501
EcoRII CCWGG 2 cut(s) 460, 1069
EcoT22I ATGCAT 1 cut(s) 739
FaeI CATG 4 cut(s) 15, 224, 341, 803
FatI CATG 4 cut(s) 11, 220, 337, 799
FblI GTMKAC 1 cut(s) 410
Fnu4HI GCNGC 1 cut(s) 1025
FokI GGATG 3 cut(s) 305, 540, 674
Fsp4HI GCNGC 1 cut(s) 1025
FspBI CTAG 7 cut(s) 30, 87, 105, 231, 311, 326, 506
GluI GCNGC 1 cut(s) 1025
HaeIII GGCC 3 cut(s) 399, 923, 976
Hin1II CATG 4 cut(s) 15, 224, 341, 803
HincII GTYRAC 1 cut(s) 627
HindII GTYRAC 1 cut(s) 627
HinfI GANTC 4 cut(s) 227, 407, 572, 845
HpaI GTTAAC 1 cut(s) 627
HphI GGTGA 2 cut(s) 236, 1085
Hpy166II GTNNAC 4 cut(s) 411, 592, 627, 1090
Hpy188I TCNGA 7 cut(s) 280, 500, 535, 621, 692, 903, 928
Hpy188III TCNNGA 5 cut(s) 140, 179, 424, 506, 713
Hpy8I GTNNAC 4 cut(s) 411, 592, 627, 1090
HpyAV CCTTC 2 cut(s) 605, 853
HpyCH4III ACNGT 1 cut(s) 658
HpyCH4V TGCA 5 cut(s) 80, 253, 335, 443, 737
HpyF3I CTNAG 6 cut(s) 39, 357, 468, 618, 804, 925
Hsp92II CATG 4 cut(s) 15, 224, 341, 803
KspAI GTTAAC 1 cut(s) 627
Kzo9I GATC 2 cut(s) 550, 709
LmnI GCTCC 2 cut(s) 699, 1072
LpnPI CCDG 9 cut(s) 363, 378, 447, 461, 474, 824, 971, 1056, 1083
Lsp1109I GCAGC 1 cut(s) 1036
LweI GCATC 6 cut(s) 89, 181, 343, 652, 746, 844
MaeI CTAG 7 cut(s) 30, 87, 105, 231, 311, 326, 506
MaeIII GTNAC 1 cut(s) 340
MalI GATC 2 cut(s) 552, 711
MboI GATC 2 cut(s) 550, 709
MboII GAAGA 4 cut(s) 167, 208, 329, 383
MfeI CAATTG 1 cut(s) 718
MflI RGATCY 2 cut(s) 550, 709
MluCI AATT 4 cut(s) 376, 428, 501, 718
MlyI GAGTC 3 cut(s) 236, 416, 581
MnlI CCTC 6 cut(s) 253, 396, 562, 761, 934, 972
Mph1103I ATGCAT 1 cut(s) 739
MseI TTAA 3 cut(s) 431, 626, 936
MslI CAYNNNNRTG 1 cut(s) 742
MspR9I CCNGG 2 cut(s) 462, 1071
MunI CAATTG 1 cut(s) 718
MvaI CCWGG 2 cut(s) 462, 1071
NdeII GATC 2 cut(s) 550, 709
NlaIII CATG 4 cut(s) 15, 224, 341, 803
NlaIV GGNNCC 1 cut(s) 990
NsiI ATGCAT 1 cut(s) 739
NspI RCATGY 2 cut(s) 341, 803
PaeI GCATGC 1 cut(s) 803
PciI ACATGT 1 cut(s) 337
PfeI GAWTC 1 cut(s) 845
PkrI GCNGC 1 cut(s) 1026
PleI GAGTC 3 cut(s) 235, 415, 580
PpsI GAGTC 3 cut(s) 235, 415, 580
PscI ACATGT 1 cut(s) 337
PshBI ATTAAT 1 cut(s) 431
Psp6I CCWGG 2 cut(s) 460, 1069
PspGI CCWGG 2 cut(s) 460, 1069
PspN4I GGNNCC 1 cut(s) 990
PspPI GGNCC 3 cut(s) 398, 975, 1058
PsrI GAACNNNNNNTAC 2 cut(s) 288, 320
PstNI CAGNNNCTG 1 cut(s) 356
PsuI RGATCY 2 cut(s) 550, 709
RsaI GTAC 2 cut(s) 970, 1091
RsaNI GTAC 2 cut(s) 969, 1090
RseI CAYNNNNRTG 1 cut(s) 742
SaqAI TTAA 3 cut(s) 431, 626, 936
SatI GCNGC 1 cut(s) 1025
Sau3AI GATC 2 cut(s) 550, 709
Sau96I GGNCC 3 cut(s) 398, 975, 1058
ScaI AGTACT 1 cut(s) 970
SchI GAGTC 3 cut(s) 236, 416, 581
ScrFI CCNGG 2 cut(s) 462, 1071
SfaNI GCATC 6 cut(s) 89, 181, 343, 652, 746, 844
SinI GGWCC 1 cut(s) 1058
SmiMI CAYNNNNRTG 1 cut(s) 742
SmlI CTYRAG 1 cut(s) 880
SmoI CTYRAG 1 cut(s) 880
SpeI ACTAGT 1 cut(s) 310
SphI GCATGC 1 cut(s) 803
Sse9I AATT 4 cut(s) 376, 428, 501, 718
SsiI CCGC 1 cut(s) 1004
SspMI CTAG 7 cut(s) 30, 87, 105, 231, 311, 326, 506
StyD4I CCNGG 2 cut(s) 460, 1069
TaaI ACNGT 1 cut(s) 658
TaqI TCGA 3 cut(s) 178, 307, 315
TasI AATT 4 cut(s) 376, 428, 501, 718
TatI WGTACW 2 cut(s) 968, 1089
TfiI GAWTC 1 cut(s) 845
Tru1I TTAA 3 cut(s) 431, 626, 936
Tru9I TTAA 3 cut(s) 431, 626, 936
TscAI CASTG 2 cut(s) 255, 663
TseI GCWGC 1 cut(s) 1024
TspDTI ATGAA 4 cut(s) 449, 481, 627, 1034
TspRI CASTG 2 cut(s) 255, 663
VpaK11BI GGWCC 1 cut(s) 1058
VspI ATTAAT 1 cut(s) 431
XapI RAATTY 2 cut(s) 376, 501
XbaI TCTAGA 1 cut(s) 505
XceI RCATGY 2 cut(s) 341, 803
XmiI GTMKAC 1 cut(s) 410
XspI CTAG 7 cut(s) 30, 87, 105, 231, 311, 326, 506
ZrmI AGTACT 1 cut(s) 970
Zsp2I ATGCAT 1 cut(s) 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.