Rorug02G0628700

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000230
Physical Location & Seq
Reverse (-)
74359287 .. 74362485
3199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0628700.1

Sequence Viewer

Length: 1335 bp
ATGGTTGTGAATGGTGACAAGATCAATTTCCCTGGCGGAGGGACACATTTCCATACCGGAGCTGATAAGTACATTGTTGCTCTTTCCAAGATGCTTAAGTTTCCTGATTTTAAATTCAACAACGGTGGAAATATTCGCAATGTTCTTGATGTGGGTTGTGGAGTTGCAAGTTTTGGGGCGTATCTTCTTTCTCATCATGTCATTGCCATGTCCCTTGCTCCTAATGATGCCCATGAGAATCAGATACAATTTGCATTAGAGAGGGGAATTCCAGCAACTCTTGGTATCTTGGGCACAAAAAGACTTACTTATCCTAGCAGATCATTTGAGCTGGCTCATTGCTCACGCTGCCGGATAGATTGGCTTCAAAGAGATGGAATCCTCTTATTAGAGCTTGACAGGTTACTAAGACCTGGAGGGTATTTTGTGTACACTTCTCCTGAAGCGTATGCTCATGATCCTGAAAATCAAAAGATCTGGAATGCTATGTCTGATCTTTCAAAAAGAATGTGCTGGAAAGTTGCAGCCAAGAAAGAGCAGAGTGTTGTATGGGCCAAGCCACTGACTAATAGTTGTTACTTGAAGAGAGATCCTTGGACCCAACCCCCTCTGTGCAATTCTGATGATGACCCAGATGCAATTTGGAATGTGAGCATGAAGACGTGCATTTCTCAATATTCTGCAAAAGTGCATAGGGATAGAGGAAGCAGACTTGCCCCTTGGCCTCAGAGGCTTACAACACCACCCCCTCGCCTGGAGGAAATTGGTGTCAGTCCTGAAGAATTCCAAGAGGACACTAGCATATGGCATTTTAGAGTCATTGAATACTGGAAGCAGATGAAGTCTGTCATACAGAGAAATTCATTCAGAAATGTCATGGATATGAATTCACAGCTTGGTGGATTTGCTACTGCCTTGAATGGAAAAGATGTCTGGGTTATGAATGTTGCTCCTGTCCATGTATCTGCCAAATTGAAGATTGTTTATGATCGGGGCTTGATTGGAACTGTTCATGACTGGTGTGAAGCGTTTTCCACATACCCACGTACATATGATCTTCTACATGCATGGGCAGTATTTTCAGATATTGAGGAACGTGGATGCAGTGCAGAGGATCTATTGATTGAAATGGATAGGATACTGAGACCCAATGGGTTTGTCATCATAAGAGACAAACCCTCTGTTATAAACTATATCCGAAAGTTTGTGACTGCCTTGAAGTGGGATGACTGGTTATCAGAAGTCGAACCTCGAGTTGATGCTCTTTCCTCAGGTGAAGAGAGAGTTTTGATTGCAAGAAAGAAGTTGTGGGATGACAAGCATACGACAATGTGA

Protein Analysis

444

Amino Acids

50.72

Weight (kDa)

8.01

Isoelectric Point (pI)

34.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_29 PF03141 2 - 434 9.7e-186 Putative S-adenosyl-L-methionine-dependent methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1187
AciI CCGC 1 cut(s) 36
AclWI GGATC 3 cut(s) 452, 584, 1122
AcsI RAATTY 5 cut(s) 113, 267, 782, 859, 886
AcuI CTGAAG 2 cut(s) 462, 798
AfaI GTAC 3 cut(s) 71, 431, 1048
AfiI CCNNNNNNNGG 3 cut(s) 38, 754, 1221
AflII CTTAAG 1 cut(s) 95
AgsI TTSAA 9 cut(s) 118, 368, 501, 583, 824, 919, 976, 1127, 1219
AjiI CACGTC 1 cut(s) 663
AjnI CCWGG 3 cut(s) 31, 412, 753
AluBI AGCT 4 cut(s) 62, 331, 394, 895
AluI AGCT 4 cut(s) 62, 331, 394, 895
Alw26I GTCTC 2 cut(s) 1138, 1164
AlwI GGATC 3 cut(s) 452, 584, 1122
Ama87I CYCGRG 1 cut(s) 1251
AoxI GGCC 2 cut(s) 552, 722
ApeKI GCWGC 2 cut(s) 348, 524
ApoI RAATTY 5 cut(s) 113, 267, 782, 859, 886
AspS9I GGNCC 2 cut(s) 552, 597
AsuHPI GGTGA 2 cut(s) 26, 1286
AvaI CYCGRG 1 cut(s) 1251
AvaII GGWCC 1 cut(s) 597
AxyI CCTNAGG 1 cut(s) 1270
BaeGI GKGCMC 1 cut(s) 296
BbsI GAAGAC 1 cut(s) 665
BbvI GCAGC 2 cut(s) 335, 536
BccI CCATC 1 cut(s) 368
BciT130I CCWGG 3 cut(s) 33, 414, 755
BciVI GTATCC 1 cut(s) 1131
BcoDI GTCTC 2 cut(s) 1138, 1164
BfaI CTAG 2 cut(s) 315, 798
BfrI CTTAAG 1 cut(s) 95
BfuI GTATCC 1 cut(s) 1131
BglI GCCNNNNNGGC 1 cut(s) 730
BglII AGATCT 1 cut(s) 474
BisI GCNGC 2 cut(s) 349, 525
BlsI GCNGC 2 cut(s) 350, 526
Bme1390I CCNGG 3 cut(s) 33, 414, 755
Bme18I GGWCC 1 cut(s) 597
BmeT110I CYCGRG 1 cut(s) 1251
BmgBI CACGTC 1 cut(s) 663
BmgT120I GGNCC 2 cut(s) 552, 597
BmiI GGNNCC 1 cut(s) 599
BmrFI CCNGG 3 cut(s) 33, 414, 755
BmsI GCATC 5 cut(s) 81, 217, 625, 1091, 1249
BpiI GAAGAC 1 cut(s) 665
BpmI CTGGAG 2 cut(s) 435, 776
BsaAI YACGTR 1 cut(s) 1046
BsaI GGTCTC 1 cut(s) 1138
BsaJI CCNNGG 3 cut(s) 31, 593, 719
BsaWI WCCGGW 1 cut(s) 56
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 754, 1221
Bse1I ACTGG 3 cut(s) 833, 1022, 1235
Bse21I CCTNAGG 1 cut(s) 1270
Bse3DI GCAATG 3 cut(s) 145, 201, 337
BseBI CCWGG 3 cut(s) 33, 414, 755
BseDI CCNNGG 3 cut(s) 31, 593, 719
BseGI GGATG 3 cut(s) 1106, 1231, 1318
BseLI CCNNNNNNNGG 3 cut(s) 38, 754, 1221
BseMI GCAATG 3 cut(s) 145, 201, 337
BseMII CTCAG 3 cut(s) 740, 1133, 1284
BseNI ACTGG 3 cut(s) 833, 1022, 1235
BseSI GKGCMC 1 cut(s) 296
BseXI GCAGC 2 cut(s) 335, 536
BsgI GTGCAG 1 cut(s) 1128
BshFI GGCC 2 cut(s) 554, 724
BsiHKCI CYCGRG 1 cut(s) 1251
BsiSI CCGG 2 cut(s) 57, 352
BslFI GGGAC 2 cut(s) 55, 196
BslI CCNNNNNNNGG 3 cut(s) 38, 754, 1221
BsmAI GTCTC 2 cut(s) 1138, 1164
BsmFI GGGAC 2 cut(s) 55, 196
BsmI GAATGC 1 cut(s) 487
BsnI GGCC 2 cut(s) 554, 724
Bso31I GGTCTC 1 cut(s) 1138
BsoBI CYCGRG 1 cut(s) 1251
Bsp1286I GDGCHC 1 cut(s) 296
Bsp1407I TGTACA 1 cut(s) 429
Bsp143I GATC 9 cut(s) 21, 320, 457, 474, 493, 589, 988, 1054, 1114
BspACI CCGC 1 cut(s) 36
BspANI GGCC 2 cut(s) 554, 724
BspCNI CTCAG 3 cut(s) 739, 1134, 1283
BspHI TCATGA 2 cut(s) 454, 1012
BspLI GGNNCC 1 cut(s) 599
BspPI GGATC 3 cut(s) 452, 584, 1122
BspTI CTTAAG 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 1138
BsrDI GCAATG 3 cut(s) 145, 201, 337
BsrGI TGTACA 1 cut(s) 429
BsrI ACTGG 3 cut(s) 833, 1022, 1235
BssECI CCNNGG 3 cut(s) 31, 593, 719
BssMI GATC 9 cut(s) 21, 320, 457, 474, 493, 589, 988, 1054, 1114
BssT1I CCWWGG 2 cut(s) 593, 719
Bst2UI CCWGG 3 cut(s) 33, 414, 755
Bst4CI ACNGT 2 cut(s) 125, 1009
Bst6I CTCTTC 2 cut(s) 578, 1272
BstAFI CTTAAG 1 cut(s) 95
BstAUI TGTACA 1 cut(s) 429
BstBAI YACGTR 1 cut(s) 1046
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 4 cut(s) 407, 726, 1142, 1270
BstENI CCTNNNNNAGG 1 cut(s) 36
BstF5I GGATG 3 cut(s) 1106, 1231, 1318
BstKTI GATC 9 cut(s) 24, 323, 460, 477, 496, 592, 991, 1057, 1117
BstMAI GTCTC 2 cut(s) 1138, 1164
BstMBI GATC 9 cut(s) 21, 320, 457, 474, 493, 589, 988, 1054, 1114
BstMWI GCNNNNNNNGC 2 cut(s) 348, 730
BstNI CCWGG 3 cut(s) 33, 414, 755
BstNSI RCATGY 1 cut(s) 1067
BstSCI CCNGG 3 cut(s) 31, 412, 753
BstSLI GKGCMC 1 cut(s) 296
BstV1I GCAGC 2 cut(s) 335, 536
BstV2I GAAGAC 1 cut(s) 665
BstX2I RGATCY 3 cut(s) 474, 589, 1114
BstYI RGATCY 3 cut(s) 474, 589, 1114
Bsu36I CCTNAGG 1 cut(s) 1270
BsuI GTATCC 1 cut(s) 1131
BsuRI GGCC 2 cut(s) 554, 724
BtrI CACGTC 1 cut(s) 663
BtsCI GGATG 3 cut(s) 1106, 1231, 1318
BtsI GCAGTG 1 cut(s) 1111
BtsIMutI CAGTG 2 cut(s) 560, 1111
Cac8I GCNNGC 1 cut(s) 333
CciI TCATGA 2 cut(s) 454, 1012
Cfr13I GGNCC 2 cut(s) 552, 597
Csp6I GTAC 3 cut(s) 70, 430, 1047
CspCI CAANNNNNGTGG 2 cut(s) 106, 141
CviQI GTAC 3 cut(s) 70, 430, 1047
DdeI CTNAG 4 cut(s) 407, 726, 1142, 1270
DpnI GATC 9 cut(s) 23, 322, 459, 476, 495, 591, 990, 1056, 1116
DpnII GATC 9 cut(s) 21, 320, 457, 474, 493, 589, 988, 1054, 1114
DraI TTTAAA 1 cut(s) 112
Eam1104I CTCTTC 2 cut(s) 578, 1272
EarI CTCTTC 2 cut(s) 578, 1272
EciI GGCGGA 1 cut(s) 51
Eco130I CCWWGG 2 cut(s) 593, 719
Eco31I GGTCTC 1 cut(s) 1138
Eco47I GGWCC 1 cut(s) 597
Eco57I CTGAAG 2 cut(s) 462, 798
Eco81I CCTNAGG 1 cut(s) 1270
Eco88I CYCGRG 1 cut(s) 1251
EcoNI CCTNNNNNAGG 1 cut(s) 36
EcoRI GAATTC 3 cut(s) 267, 782, 886
EcoRII CCWGG 3 cut(s) 31, 412, 753
EcoT14I CCWWGG 2 cut(s) 593, 719
EcoT22I ATGCAT 1 cut(s) 1069
ErhI CCWWGG 2 cut(s) 593, 719
FalI AAGNNNNNCTT 2 cut(s) 292, 324
FaqI GGGAC 2 cut(s) 55, 196
FauNDI CATATG 2 cut(s) 803, 1051
Fnu4HI GCNGC 2 cut(s) 349, 525
FokI GGATG 3 cut(s) 1113, 1238, 1325
Fsp4HI GCNGC 2 cut(s) 349, 525
FspBI CTAG 2 cut(s) 315, 798
GluI GCNGC 2 cut(s) 349, 525
GsuI CTGGAG 2 cut(s) 435, 776
HaeIII GGCC 2 cut(s) 554, 724
HapII CCGG 2 cut(s) 57, 352
HinfI GANTC 3 cut(s) 238, 378, 816
HpaII CCGG 2 cut(s) 57, 352
HphI GGTGA 2 cut(s) 26, 1286
Hpy166II GTNNAC 2 cut(s) 430, 432
Hpy188I TCNGA 8 cut(s) 243, 493, 622, 729, 869, 1084, 1199, 1240
Hpy188III TCNNGA 8 cut(s) 104, 146, 440, 455, 461, 478, 776, 1013
Hpy8I GTNNAC 2 cut(s) 430, 432
HpyCH4III ACNGT 2 cut(s) 125, 1009
HpyCH4IV ACGT 3 cut(s) 662, 1045, 1096
HpyF10VI GCNNNNNNNGC 2 cut(s) 348, 730
HpyF3I CTNAG 4 cut(s) 407, 726, 1142, 1270
HpySE526I ACGT 3 cut(s) 662, 1045, 1096
Kzo9I GATC 9 cut(s) 21, 320, 457, 474, 493, 589, 988, 1054, 1114
LmnI GCTCC 3 cut(s) 59, 223, 955
Lsp1109I GCAGC 2 cut(s) 335, 536
LweI GCATC 5 cut(s) 81, 217, 625, 1091, 1249
MaeI CTAG 2 cut(s) 315, 798
MaeII ACGT 3 cut(s) 662, 1045, 1096
MaeIII GTNAC 4 cut(s) 14, 402, 575, 1207
MalI GATC 9 cut(s) 23, 322, 459, 476, 495, 591, 990, 1056, 1116
MboI GATC 9 cut(s) 21, 320, 457, 474, 493, 589, 988, 1054, 1114
MboII GAAGA 7 cut(s) 176, 595, 670, 791, 988, 1049, 1289
MflI RGATCY 3 cut(s) 474, 589, 1114
MhlI GDGCHC 1 cut(s) 296
MlyI GAGTC 1 cut(s) 825
Mph1103I ATGCAT 1 cut(s) 1069
MseI TTAA 2 cut(s) 96, 111
MslI CAYNNNNRTG 2 cut(s) 206, 881
MspCI CTTAAG 1 cut(s) 95
MspI CCGG 2 cut(s) 57, 352
MspR9I CCNGG 3 cut(s) 33, 414, 755
Mva1269I GAATGC 1 cut(s) 487
MvaI CCWGG 3 cut(s) 33, 414, 755
MwoI GCNNNNNNNGC 2 cut(s) 348, 730
NdeI CATATG 2 cut(s) 803, 1051
NdeII GATC 9 cut(s) 21, 320, 457, 474, 493, 589, 988, 1054, 1114
NlaIV GGNNCC 1 cut(s) 599
NmuCI GTSAC 2 cut(s) 14, 1207
NsiI ATGCAT 1 cut(s) 1069
NspI RCATGY 1 cut(s) 1067
PaeR7I CTCGAG 1 cut(s) 1251
PagI TCATGA 2 cut(s) 454, 1012
PctI GAATGC 1 cut(s) 487
PfeI GAWTC 2 cut(s) 238, 378
PkrI GCNGC 2 cut(s) 350, 526
PleI GAGTC 1 cut(s) 824
PpsI GAGTC 1 cut(s) 824
Ppu21I YACGTR 1 cut(s) 1046
PsiI TTATAA 1 cut(s) 1187
Psp6I CCWGG 3 cut(s) 31, 412, 753
PspGI CCWGG 3 cut(s) 31, 412, 753
PspN4I GGNNCC 1 cut(s) 599
PspPI GGNCC 2 cut(s) 552, 597
PspXI VCTCGAGB 1 cut(s) 1251
PsuI RGATCY 3 cut(s) 474, 589, 1114
RsaI GTAC 3 cut(s) 71, 431, 1048
RsaNI GTAC 3 cut(s) 70, 430, 1047
RseI CAYNNNNRTG 2 cut(s) 206, 881
SaqAI TTAA 2 cut(s) 96, 111
SatI GCNGC 2 cut(s) 349, 525
Sau3AI GATC 9 cut(s) 21, 320, 457, 474, 493, 589, 988, 1054, 1114
Sau96I GGNCC 2 cut(s) 552, 597
SchI GAGTC 1 cut(s) 825
ScrFI CCNGG 3 cut(s) 33, 414, 755
SduI GDGCHC 1 cut(s) 296
SfaNI GCATC 5 cut(s) 81, 217, 625, 1091, 1249
Sfr274I CTCGAG 1 cut(s) 1251
SinI GGWCC 1 cut(s) 597
SlaI CTCGAG 1 cut(s) 1251
SmiMI CAYNNNNRTG 2 cut(s) 206, 881
SmlI CTYRAG 2 cut(s) 95, 1251
SmoI CTYRAG 2 cut(s) 95, 1251
SsiI CCGC 1 cut(s) 36
SspI AATATT 2 cut(s) 133, 677
SspMI CTAG 2 cut(s) 315, 798
StyD4I CCNGG 3 cut(s) 31, 412, 753
StyI CCWWGG 2 cut(s) 593, 719
TaaI ACNGT 2 cut(s) 125, 1009
TaiI ACGT 3 cut(s) 665, 1048, 1099
TaqI TCGA 2 cut(s) 1245, 1252
TatI WGTACW 2 cut(s) 69, 429
TfiI GAWTC 2 cut(s) 238, 378
Tru1I TTAA 2 cut(s) 96, 111
Tru9I TTAA 2 cut(s) 96, 111
TscAI CASTG 2 cut(s) 567, 1111
TseFI GTSAC 2 cut(s) 14, 1207
TseI GCWGC 2 cut(s) 348, 524
Tsp45I GTSAC 2 cut(s) 14, 1207
TspDTI ATGAA 6 cut(s) 671, 852, 854, 899, 956, 1001
TspRI CASTG 2 cut(s) 567, 1111
Vha464I CTTAAG 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 597
XagI CCTNNNNNAGG 1 cut(s) 36
XapI RAATTY 5 cut(s) 113, 267, 782, 859, 886
XceI RCATGY 1 cut(s) 1067
XcmI CCANNNNNNNNNTGG 1 cut(s) 639
XhoI CTCGAG 1 cut(s) 1251
XspI CTAG 2 cut(s) 315, 798
Zsp2I ATGCAT 1 cut(s) 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.