RLG00000035252

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
63717334 .. 63717870
537 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035252

Sequence Viewer

Length: 339 bp
ATGGGAGGAATTAATGTTGGAGATAAGTTTGTGGCTTTTAGCTCTTCAGGGAAAGTTTCAAAGGGCAACATGTTTGTGAACTCAGGAATGCTGGAAATGCTTCTGCCGCAAGATTTCAGATTGGTAGCTGCAGGGAGGGAGCAGATTCCAATGGCACCCATTGAAGATGACCCAACTTTGGAAACTCAGCTTTGCTACAAAAGCAATGCTAATCTTGGAGGGCCAATATTGATATTAACACCAATACAAACCTTCATTACACCAAAGGATGGGATTTTCTGCTTTGCAATGCCGTGTCCTTGGGAAGGTGGTATTTATGGAAACGGTCGCCTCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

12.07

Weight (kDa)

4.89

Isoelectric Point (pI)

29.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 154
AccB7I CCANNNNNTGG 1 cut(s) 269
AciI CCGC 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 30
AfiI CCNNNNNNNGG 3 cut(s) 178, 269, 305
AflIII ACRYGT 1 cut(s) 69
AgsI TTSAA 2 cut(s) 60, 164
AluBI AGCT 3 cut(s) 42, 128, 190
AluI AGCT 3 cut(s) 42, 128, 190
AoxI GGCC 1 cut(s) 221
ApeKI GCWGC 1 cut(s) 128
AseI ATTAAT 1 cut(s) 12
Asp700I GAANNNNTTC 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 221
BanI GGYRCC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 115
BccI CCATC 1 cut(s) 263
BceAI ACGGC 1 cut(s) 277
BfmI CTRYAG 1 cut(s) 129
BisI GCNGC 2 cut(s) 107, 129
BlsI GCNGC 2 cut(s) 108, 130
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 299
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 269, 305
Bse3DI GCAATG 2 cut(s) 211, 294
BseDI CCNNGG 1 cut(s) 299
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 3 cut(s) 178, 269, 305
BseMI GCAATG 2 cut(s) 211, 294
BseMII CTCAG 2 cut(s) 96, 200
BseXI GCAGC 1 cut(s) 115
Bsh1285I CGRYCG 1 cut(s) 328
BshFI GGCC 1 cut(s) 223
BshNI GGYRCC 1 cut(s) 154
BsiEI CGRYCG 1 cut(s) 328
BslI CCNNNNNNNGG 3 cut(s) 178, 269, 305
BsmI GAATGC 1 cut(s) 93
BsnI GGCC 1 cut(s) 223
BspACI CCGC 1 cut(s) 107
BspANI GGCC 1 cut(s) 223
BspCNI CTCAG 2 cut(s) 95, 199
BspLI GGNNCC 1 cut(s) 156
BspMAI CTGCAG 1 cut(s) 133
BspQI GCTCTTC 1 cut(s) 49
BspT107I GGYRCC 1 cut(s) 154
BsrDI GCAATG 2 cut(s) 211, 294
BssECI CCNNGG 1 cut(s) 299
BssT1I CCWWGG 1 cut(s) 299
Bst4CI ACNGT 1 cut(s) 326
Bst6I CTCTTC 1 cut(s) 49
BstDEI CTNAG 2 cut(s) 82, 186
BstENI CCTNNNNNAGG 1 cut(s) 303
BstF5I GGATG 1 cut(s) 274
BstMCI CGRYCG 1 cut(s) 328
BstMWI GCNNNNNNNGC 3 cut(s) 97, 106, 201
BstNSI RCATGY 1 cut(s) 73
BstSFI CTRYAG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 223
BtsCI GGATG 1 cut(s) 274
Cfr13I GGNCC 1 cut(s) 221
CviAII CATG 1 cut(s) 70
CviJI RGCY 5 cut(s) 35, 42, 128, 190, 223
CviKI_1 RGCY 5 cut(s) 35, 42, 128, 190, 223
DdeI CTNAG 2 cut(s) 82, 186
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 30
EcoNI CCTNNNNNAGG 1 cut(s) 303
EcoT14I CCWWGG 1 cut(s) 299
ErhI CCWWGG 1 cut(s) 299
FaeI CATG 1 cut(s) 73
FaiI YATR 2 cut(s) 71, 318
FatI CATG 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 107, 129
FokI GGATG 1 cut(s) 281
Fsp4HI GCNGC 2 cut(s) 107, 129
GluI GCNGC 2 cut(s) 107, 129
HaeIII GGCC 1 cut(s) 223
Hin1II CATG 1 cut(s) 73
HinfI GANTC 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 119
Hpy188III TCNNGA 1 cut(s) 84
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 2 cut(s) 262, 299
HpyCH4III ACNGT 1 cut(s) 326
HpyCH4V TGCA 2 cut(s) 131, 287
HpyF10VI GCNNNNNNNGC 3 cut(s) 97, 106, 201
HpyF3I CTNAG 2 cut(s) 82, 186
Hsp92II CATG 1 cut(s) 73
LguI GCTCTTC 1 cut(s) 49
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 4 cut(s) 33, 69, 77, 117
Lsp1109I GCAGC 1 cut(s) 115
MboII GAAGA 2 cut(s) 36, 176
MluCI AATT 1 cut(s) 9
MnlI CCTC 2 cut(s) 129, 212
MroXI GAANNNNTTC 1 cut(s) 99
MseI TTAA 3 cut(s) 12, 236, 337
MslI CAYNNNNRTG 1 cut(s) 74
Mva1269I GAATGC 1 cut(s) 93
MwoI GCNNNNNNNGC 3 cut(s) 97, 106, 201
NlaIII CATG 1 cut(s) 73
NlaIV GGNNCC 1 cut(s) 156
NspI RCATGY 1 cut(s) 73
PciI ACATGT 1 cut(s) 69
PciSI GCTCTTC 1 cut(s) 49
PctI GAATGC 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 145
PflMI CCANNNNNTGG 1 cut(s) 269
PkrI GCNGC 2 cut(s) 108, 130
PscI ACATGT 1 cut(s) 69
PshBI ATTAAT 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 1 cut(s) 221
PstI CTGCAG 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 74
SapI GCTCTTC 1 cut(s) 49
SaqAI TTAA 3 cut(s) 12, 236, 337
SatI GCNGC 2 cut(s) 107, 129
Sau96I GGNCC 1 cut(s) 221
SetI ASST 5 cut(s) 44, 130, 192, 254, 310
SfcI CTRYAG 1 cut(s) 129
SgeI CNNG 9 cut(s) 60, 82, 96, 104, 122, 144, 227, 306, 312
SmiMI CAYNNNNRTG 1 cut(s) 74
Sse9I AATT 1 cut(s) 9
SsiI CCGC 1 cut(s) 107
SspI AATATT 1 cut(s) 228
StyI CCWWGG 1 cut(s) 299
TaaI ACNGT 1 cut(s) 326
TasI AATT 1 cut(s) 9
TauI GCSGC 1 cut(s) 109
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 3 cut(s) 12, 236, 337
Tru9I TTAA 3 cut(s) 12, 236, 337
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 244
Van91I CCANNNNNTGG 1 cut(s) 269
VspI ATTAAT 1 cut(s) 12
XagI CCTNNNNNAGG 1 cut(s) 303
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.