RLG00000025711

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000230
Physical Location & Seq
Forward (+)
47828696 .. 47830074
1379 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025711

Sequence Viewer

Length: 1131 bp
ATGGCAGCCATGGACACTATCCTTTGTCATGTACACTTTGGTGTAGTACTTGTGACTACTCTTTTCATATATCTTGTATCCTTTTCTGCTACAGCAGCAAGCAATGGTGGGTTTAGTGTCAAACTCGTCCACCGAAACTCCCCAAAGTCGCCGTTTTACAATCATAACAAAACTCCTATGGGCAAGCCACTGTCACGAGTACAAGCCAACAACGGCCAGTATCTTATGAAGCTCTCACTTGGAAATCCGCTGTTCGATGTTTACGGCATTGCTGATACAGGCAGTGACTTATTCTGGGCACAATGTGTACCATGTGAAGGCTGCTACAAGCAAATCAAACCCAAATTCGATCCGAAGAAGTCATCAACATATAGCGACCTACCTTGTGGTGCACAAGAATGTAGTCTGGTTCCTAATTCTTGTTCGACAGAAAATGTTTGCAGTTACCATTACGAATACGGAGACGGTTCGGTGACCATAGGGGTATTGGCTAAAGAGACCATTTCCTTGGAATCCCCGTCTGGGAATGTTGGAGGCAAGAAGTTCTCATACAGTTTGGTTCCATTTCGTACTGACCCTAGAATCGAAAGCAAGATGAGCTTTGGGAAGGGCAGTGAAGTGTTGGGTAATGGTGTTGTGACAGTACCGTTGGTGCCGAAAGACGACACTTTTTATTTTGTGACGGTGGAAGGATTTAGCGTCGAAGACAAGTTTTTGCCTTTCGATTCATCAGGGAAAGTTGAGAAGGGCAACATTTTCCTCCACTCGGGAACACCGCCGACGTATATACCGACGGATTTATATGATCGGTTGGTAGCTGAACTGAGGAAGCAGATTCCGATGGCGCCCATTGAAGATGACCCGGATTTGGGGAATCAGCTGTGTTACAGGACCAAGACTAATCTCAAGGGACCAATATTGACGGTGCATTTTGAGGGGGGTGCTAATATAAAGTTGACACCAACACAAACATTTATTCCACCAAAAGATGAGGATTTCTGCTTTGCAATGATAGGTGATAACAGTGGTGTTAACATTTATGGAAATTTTGCTCAGACAAATTTCTTGATTGGTATTGACCTTGAAACAAAGGTGGTTTCTTTCAAGCCAAATGATTGCACAAAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

377

Amino Acids

41.15

Weight (kDa)

5.84

Isoelectric Point (pI)

31.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 74 - 178 3.9e-28 Xylanase inhibitor N-terminal
TAXi_C PF14541 225 - 369 2.5e-21 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 652, 844
AciI CCGC 2 cut(s) 248, 776
AclWI GGATC 1 cut(s) 344
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 3 cut(s) 344, 1045, 1060
AcyI GRCGYC 1 cut(s) 845
AdeI CACNNNGTG 1 cut(s) 305
AfaI GTAC 6 cut(s) 33, 48, 201, 309, 571, 645
AfiI CCNNNNNNNGG 5 cut(s) 317, 522, 766, 868, 869
AgsI TTSAA 3 cut(s) 854, 1085, 1105
AleI CACNNNNGTG 1 cut(s) 39
AluBI AGCT 4 cut(s) 232, 600, 818, 880
AluI AGCT 4 cut(s) 232, 600, 818, 880
Alw21I GWGCWC 1 cut(s) 394
Alw26I GTCTC 2 cut(s) 456, 491
Alw44I GTGCAC 1 cut(s) 390
AlwI GGATC 1 cut(s) 344
Ama87I CYCGRG 1 cut(s) 766
AoxI GGCC 1 cut(s) 214
ApaLI GTGCAC 1 cut(s) 390
ApeKI GCWGC 3 cut(s) 5, 95, 321
ApoI RAATTY 3 cut(s) 344, 1045, 1060
AspLEI GCGC 1 cut(s) 847
AspS9I GGNCC 2 cut(s) 891, 911
AsuC2I CCSGG 1 cut(s) 863
AsuHPI GGTGA 2 cut(s) 484, 1028
AvaI CYCGRG 1 cut(s) 766
AvaII GGWCC 2 cut(s) 891, 911
BaeGI GKGCMC 2 cut(s) 301, 394
BanI GGYRCC 2 cut(s) 652, 844
BarI GAAGNNNNNNTAC 2 cut(s) 533, 565
BauI CACGAG 1 cut(s) 195
BbsI GAAGAC 1 cut(s) 711
Bbv12I GWGCWC 1 cut(s) 394
BbvI GCAGC 3 cut(s) 17, 107, 308
BccI CCATC 1 cut(s) 835
BceAI ACGGC 3 cut(s) 136, 229, 280
BciVI GTATCC 1 cut(s) 88
BcnI CCSGG 1 cut(s) 863
BcoDI GTCTC 2 cut(s) 456, 491
BfaI CTAG 1 cut(s) 579
BfmI CTRYAG 1 cut(s) 90
BfoI RGCGCY 1 cut(s) 848
BfuI GTATCC 1 cut(s) 88
BisI GCNGC 3 cut(s) 6, 96, 322
BlsI GCNGC 3 cut(s) 7, 97, 323
BmcAI AGTACT 1 cut(s) 48
Bme1390I CCNGG 1 cut(s) 863
Bme18I GGWCC 2 cut(s) 891, 911
BmeT110I CYCGRG 1 cut(s) 766
BmgT120I GGNCC 2 cut(s) 891, 911
BmiI GGNNCC 5 cut(s) 411, 561, 654, 846, 912
BmrFI CCNGG 1 cut(s) 863
BpiI GAAGAC 1 cut(s) 711
BpuEI CTTGAG 1 cut(s) 890
BpuMI CCSGG 1 cut(s) 863
BsaHI GRCGYC 1 cut(s) 845
BsaI GGTCTC 1 cut(s) 491
BsaJI CCNNGG 2 cut(s) 9, 507
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bsc4I CCNNNNNNNGG 5 cut(s) 317, 522, 766, 868, 869
Bse1I ACTGG 1 cut(s) 217
Bse3DI GCAATG 3 cut(s) 109, 267, 1014
BseDI CCNNGG 2 cut(s) 9, 507
BseLI CCNNNNNNNGG 5 cut(s) 317, 522, 766, 868, 869
BseMI GCAATG 3 cut(s) 109, 267, 1014
BseMII CTCAG 2 cut(s) 815, 1067
BseNI ACTGG 1 cut(s) 217
BseSI GKGCMC 2 cut(s) 301, 394
BseXI GCAGC 3 cut(s) 17, 107, 308
BshFI GGCC 1 cut(s) 216
BshNI GGYRCC 2 cut(s) 652, 844
BsiHKAI GWGCWC 1 cut(s) 394
BsiHKCI CYCGRG 1 cut(s) 766
BsiSI CCGG 1 cut(s) 863
BslFI GGGAC 1 cut(s) 924
BslI CCNNNNNNNGG 5 cut(s) 317, 522, 766, 868, 869
BsmAI GTCTC 2 cut(s) 456, 491
BsmBI CGTCTC 1 cut(s) 456
BsmFI GGGAC 1 cut(s) 924
BsnI GGCC 1 cut(s) 216
Bso31I GGTCTC 1 cut(s) 491
BsoBI CYCGRG 1 cut(s) 766
Bsp1286I GDGCHC 2 cut(s) 301, 394
Bsp1407I TGTACA 1 cut(s) 31
Bsp143I GATC 2 cut(s) 349, 805
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 2 cut(s) 248, 776
BspANI GGCC 1 cut(s) 216
BspCNI CTCAG 2 cut(s) 816, 1066
BspLI GGNNCC 5 cut(s) 411, 561, 654, 846, 912
BspPI GGATC 1 cut(s) 344
BspT107I GGYRCC 2 cut(s) 652, 844
BspTNI GGTCTC 1 cut(s) 491
BsrDI GCAATG 3 cut(s) 109, 267, 1014
BsrGI TGTACA 1 cut(s) 31
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 2 cut(s) 9, 507
BssMI GATC 2 cut(s) 349, 805
BssNI GRCGYC 1 cut(s) 845
BssSI CACGAG 1 cut(s) 195
BssT1I CCWWGG 2 cut(s) 9, 507
Bst2BI CACGAG 1 cut(s) 195
Bst4CI ACNGT 8 cut(s) 192, 467, 554, 643, 648, 685, 925, 1025
BstACI GRCGYC 1 cut(s) 845
BstAUI TGTACA 1 cut(s) 31
BstC8I GCNNGC 2 cut(s) 100, 185
BstDEI CTNAG 2 cut(s) 824, 1053
BstDSI CCRYGG 1 cut(s) 9
BstEII GGTNACC 1 cut(s) 472
BstH2I RGCGCY 1 cut(s) 848
BstHHI GCGC 1 cut(s) 847
BstKTI GATC 2 cut(s) 352, 808
BstMAI GTCTC 2 cut(s) 456, 491
BstMBI GATC 2 cut(s) 349, 805
BstMWI GCNNNNNNNGC 2 cut(s) 95, 597
BstPI GGTNACC 1 cut(s) 472
BstSCI CCNGG 1 cut(s) 861
BstSFI CTRYAG 1 cut(s) 90
BstSLI GKGCMC 2 cut(s) 301, 394
BstV1I GCAGC 3 cut(s) 17, 107, 308
BstV2I GAAGAC 1 cut(s) 711
BstXI CCANNNNNNTGG 1 cut(s) 508
BsuI GTATCC 1 cut(s) 88
BsuRI GGCC 1 cut(s) 216
BtgI CCRYGG 1 cut(s) 9
BtsI GCAGTG 2 cut(s) 289, 619
BtsIMutI CAGTG 4 cut(s) 188, 289, 619, 1030
Cac8I GCNNGC 2 cut(s) 100, 185
CfoI GCGC 1 cut(s) 847
Cfr13I GGNCC 2 cut(s) 891, 911
CseI GACGC 1 cut(s) 688
Csp6I GTAC 6 cut(s) 32, 47, 200, 308, 570, 644
CviAII CATG 3 cut(s) 10, 29, 312
CviQI GTAC 6 cut(s) 32, 47, 200, 308, 570, 644
DdeI CTNAG 2 cut(s) 824, 1053
DinI GGCGCC 1 cut(s) 846
DpnI GATC 2 cut(s) 351, 807
DpnII GATC 2 cut(s) 349, 805
DraIII CACNNNGTG 1 cut(s) 305
EaeI YGGCCR 1 cut(s) 214
Eco130I CCWWGG 2 cut(s) 9, 507
Eco31I GGTCTC 1 cut(s) 491
Eco47I GGWCC 2 cut(s) 891, 911
Eco88I CYCGRG 1 cut(s) 766
Eco91I GGTNACC 1 cut(s) 472
EcoO65I GGTNACC 1 cut(s) 472
EcoT14I CCWWGG 2 cut(s) 9, 507
EgeI GGCGCC 1 cut(s) 846
EheI GGCGCC 1 cut(s) 846
ErhI CCWWGG 2 cut(s) 9, 507
Esp3I CGTCTC 1 cut(s) 456
FaeI CATG 3 cut(s) 13, 32, 315
FalI AAGNNNNNCTT 2 cut(s) 584, 616
FaqI GGGAC 1 cut(s) 924
FatI CATG 3 cut(s) 9, 28, 311
Fnu4HI GCNGC 3 cut(s) 6, 96, 322
Fsp4HI GCNGC 3 cut(s) 6, 96, 322
FspBI CTAG 1 cut(s) 579
GlaI GCGC 1 cut(s) 846
GluI GCNGC 3 cut(s) 6, 96, 322
HaeII RGCGCY 1 cut(s) 848
HaeIII GGCC 1 cut(s) 216
HapII CCGG 1 cut(s) 863
HgaI GACGC 1 cut(s) 688
HhaI GCGC 1 cut(s) 847
Hin1I GRCGYC 1 cut(s) 845
Hin1II CATG 3 cut(s) 13, 32, 315
Hin6I GCGC 1 cut(s) 845
HinP1I GCGC 1 cut(s) 845
HincII GTYRAC 2 cut(s) 957, 1033
HindII GTYRAC 2 cut(s) 957, 1033
HinfI GANTC 5 cut(s) 512, 582, 725, 835, 874
HpaI GTTAAC 1 cut(s) 1033
HpaII CCGG 1 cut(s) 863
HphI GGTGA 2 cut(s) 484, 1028
Hpy166II GTNNAC 7 cut(s) 34, 130, 262, 308, 392, 957, 1033
Hpy188I TCNGA 3 cut(s) 354, 840, 1056
Hpy188III TCNNGA 3 cut(s) 195, 768, 1066
Hpy8I GTNNAC 7 cut(s) 34, 130, 262, 308, 392, 957, 1033
Hpy99I CGWCG 3 cut(s) 704, 784, 796
HpyAV CCTTC 4 cut(s) 311, 601, 683, 739
HpyCH4III ACNGT 8 cut(s) 192, 467, 554, 643, 648, 685, 925, 1025
HpyCH4IV ACGT 1 cut(s) 782
HpyCH4V TGCA 5 cut(s) 392, 441, 928, 1007, 1119
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 597
HpyF3I CTNAG 2 cut(s) 824, 1053
HpySE526I ACGT 1 cut(s) 782
Hsp92I GRCGYC 1 cut(s) 845
Hsp92II CATG 3 cut(s) 13, 32, 315
HspAI GCGC 1 cut(s) 845
KasI GGCGCC 1 cut(s) 844
KspAI GTTAAC 1 cut(s) 1033
Kzo9I GATC 2 cut(s) 349, 805
LpnPI CCDG 8 cut(s) 230, 264, 280, 392, 507, 717, 874, 876
Lsp1109I GCAGC 3 cut(s) 17, 107, 308
MaeI CTAG 1 cut(s) 579
MaeII ACGT 1 cut(s) 782
MaeIII GTNAC 8 cut(s) 52, 192, 284, 443, 472, 637, 679, 884
MalI GATC 2 cut(s) 351, 807
MboI GATC 2 cut(s) 349, 805
MboII GAAGA 3 cut(s) 367, 716, 866
MhlI GDGCHC 2 cut(s) 301, 394
MluCI AATT 4 cut(s) 344, 415, 1045, 1060
Mly113I GGCGCC 1 cut(s) 845
MmeI TCCRAC 1 cut(s) 511
MnlI CCTC 5 cut(s) 527, 770, 819, 928, 985
MseI TTAA 2 cut(s) 1032, 1129
MslI CAYNNNNRTG 2 cut(s) 39, 397
MspA1I CMGCKG 2 cut(s) 250, 880
MspI CCGG 1 cut(s) 863
MspR9I CCNGG 1 cut(s) 863
MwoI GCNNNNNNNGC 2 cut(s) 95, 597
NarI GGCGCC 1 cut(s) 845
NciI CCSGG 1 cut(s) 863
NcoI CCATGG 1 cut(s) 9
NdeII GATC 2 cut(s) 349, 805
NlaIII CATG 3 cut(s) 13, 32, 315
NlaIV GGNNCC 5 cut(s) 411, 561, 654, 846, 912
NmuCI GTSAC 6 cut(s) 52, 192, 284, 472, 637, 679
OliI CACNNNNGTG 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 788
PfeI GAWTC 5 cut(s) 512, 582, 725, 835, 874
PkrI GCNGC 3 cut(s) 7, 97, 323
PluTI GGCGCC 1 cut(s) 848
PspEI GGTNACC 1 cut(s) 472
PspN4I GGNNCC 5 cut(s) 411, 561, 654, 846, 912
PspPI GGNCC 2 cut(s) 891, 911
PvuII CAGCTG 1 cut(s) 880
RsaI GTAC 6 cut(s) 33, 48, 201, 309, 571, 645
RsaNI GTAC 6 cut(s) 32, 47, 200, 308, 570, 644
RseI CAYNNNNRTG 2 cut(s) 39, 397
SaqAI TTAA 2 cut(s) 1032, 1129
SatI GCNGC 3 cut(s) 6, 96, 322
Sau3AI GATC 2 cut(s) 349, 805
Sau96I GGNCC 2 cut(s) 891, 911
ScaI AGTACT 1 cut(s) 48
ScrFI CCNGG 1 cut(s) 863
SduI GDGCHC 2 cut(s) 301, 394
SfcI CTRYAG 1 cut(s) 90
SfoI GGCGCC 1 cut(s) 846
SinI GGWCC 2 cut(s) 891, 911
SmiMI CAYNNNNRTG 2 cut(s) 39, 397
SmlI CTYRAG 1 cut(s) 905
SmoI CTYRAG 1 cut(s) 905
Sse9I AATT 4 cut(s) 344, 415, 1045, 1060
SsiI CCGC 2 cut(s) 248, 776
SspDI GGCGCC 1 cut(s) 844
SspI AATATT 1 cut(s) 918
SspMI CTAG 1 cut(s) 579
StyD4I CCNGG 1 cut(s) 861
StyI CCWWGG 2 cut(s) 9, 507
TaaI ACNGT 8 cut(s) 192, 467, 554, 643, 648, 685, 925, 1025
TaiI ACGT 1 cut(s) 785
TaqI TCGA 6 cut(s) 255, 348, 425, 585, 702, 723
TasI AATT 4 cut(s) 344, 415, 1045, 1060
TatI WGTACW 3 cut(s) 31, 46, 199
TfiI GAWTC 5 cut(s) 512, 582, 725, 835, 874
Tru1I TTAA 2 cut(s) 1032, 1129
Tru9I TTAA 2 cut(s) 1032, 1129
TscAI CASTG 4 cut(s) 195, 289, 619, 1030
TseFI GTSAC 6 cut(s) 52, 192, 284, 472, 637, 679
TseI GCWGC 3 cut(s) 5, 95, 321
Tsp45I GTSAC 6 cut(s) 52, 192, 284, 472, 637, 679
TspDTI ATGAA 3 cut(s) 55, 242, 717
TspGWI ACGGA 2 cut(s) 474, 809
TspRI CASTG 4 cut(s) 195, 289, 619, 1030
VneI GTGCAC 1 cut(s) 390
VpaK11BI GGWCC 2 cut(s) 891, 911
XapI RAATTY 3 cut(s) 344, 1045, 1060
XcmI CCANNNNNNNNNTGG 1 cut(s) 484
XspI CTAG 1 cut(s) 579
ZrmI AGTACT 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.