Rh2DG537800

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000230
Physical Location & Seq
Reverse (-)
76752017 .. 76760640
8624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG537800.1

Sequence Viewer

Length: 540 bp
ATGGATCCAGACACAACGGGATCCACATTGCCAACCGATTCGGGTGATGGCTTTAATATGAAGTTCTCATTGGGAACCCCGCCCTTAGATATTTATGCAGCTGCAGATACAGGCAGCGATCTAGTATGGACGCAATGTCAGCCGTGTCAAGCTTGCTACGAGACCAAATATGCCCTCTTCGACTCGAGAAATTCCTCAACTTATAGAAACATTACTTGTTCTGCAAGGGAGTGTAGACTTCTTGGCGATGCCAGACCACCAAACTATTCACCAAACATATGTAGAAAATTTCCTGAAGGAAATTGTGATTATCGTGTCACATATGCAGACAAGGCATCCTCTACAGGCGTATTGGCAAAAGAAACAATTACCTTGACATCTAAGACAGAAAAACAGCCATGGATCCATTATGGAAATGCCCTAAAGAGGCACGTGGGCCCATCAATGATGTTTGGGTCAGTTGCCCATGCTTTTGGAACCACAAGGGCAAGCCGGAGGCCAAGGCCCCTCTTCTTGAGAGCTTTCTGTCTCTTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

179

Amino Acids

19.83

Weight (kDa)

8.8

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 19 - 130 1.2e-27 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 235
AciI CCGC 1 cut(s) 80
AclWI GGATC 5 cut(s) 12, 15, 28, 397, 410
AcsI RAATTY 2 cut(s) 190, 287
AcuI CTGAAG 1 cut(s) 315
AcvI CACGTG 1 cut(s) 433
AfiI CCNNNNNNNGG 1 cut(s) 426
AhdI GACNNNNNGTC 1 cut(s) 135
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 3 cut(s) 101, 152, 521
AluI AGCT 3 cut(s) 101, 152, 521
Alw26I GTCTC 2 cut(s) 155, 533
AlwI GGATC 5 cut(s) 12, 15, 28, 397, 410
Ama87I CYCGRG 1 cut(s) 184
AoxI GGCC 3 cut(s) 436, 497, 503
ApaI GGGCCC 1 cut(s) 440
ApeKI GCWGC 3 cut(s) 98, 101, 114
ApoI RAATTY 2 cut(s) 190, 287
AspS9I GGNCC 3 cut(s) 436, 437, 504
AsuHPI GGTGA 2 cut(s) 56, 261
AvaI CYCGRG 1 cut(s) 184
BaeGI GKGCMC 1 cut(s) 440
BamHI GGATCC 3 cut(s) 4, 20, 402
BanII GRGCYC 1 cut(s) 440
BbrPI CACGTG 1 cut(s) 433
BbvI GCAGC 3 cut(s) 88, 110, 126
BccI CCATC 2 cut(s) 41, 448
BceAI ACGGC 1 cut(s) 127
BcoDI GTCTC 2 cut(s) 155, 533
BfaI CTAG 1 cut(s) 122
BfmI CTRYAG 2 cut(s) 102, 342
BisI GCNGC 3 cut(s) 99, 102, 115
BlsI GCNGC 3 cut(s) 100, 103, 116
BmeRI GACNNNNNGTC 1 cut(s) 135
BmeT110I CYCGRG 1 cut(s) 184
BmgT120I GGNCC 3 cut(s) 436, 437, 504
BmiI GGNNCC 7 cut(s) 6, 22, 76, 404, 438, 478, 506
BmsI GCATC 2 cut(s) 238, 344
BpuEI CTTGAG 1 cut(s) 535
BsaAI YACGTR 1 cut(s) 433
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 2 cut(s) 398, 500
Bsc4I CCNNNNNNNGG 1 cut(s) 426
Bse3DI GCAATG 2 cut(s) 26, 140
BseDI CCNNGG 2 cut(s) 398, 500
BseGI GGATG 1 cut(s) 335
BseLI CCNNNNNNNGG 1 cut(s) 426
BseMI GCAATG 2 cut(s) 26, 140
BseSI GKGCMC 1 cut(s) 440
BseXI GCAGC 3 cut(s) 88, 110, 126
BshFI GGCC 3 cut(s) 438, 499, 505
BsiHKCI CYCGRG 1 cut(s) 184
BsiSI CCGG 1 cut(s) 493
BslI CCNNNNNNNGG 1 cut(s) 426
BsmAI GTCTC 2 cut(s) 155, 533
BsnI GGCC 3 cut(s) 438, 499, 505
Bso31I GGTCTC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 184
Bsp120I GGGCCC 1 cut(s) 436
Bsp1286I GDGCHC 1 cut(s) 440
Bsp143I GATC 4 cut(s) 4, 20, 118, 402
Bsp19I CCATGG 1 cut(s) 398
BspACI CCGC 1 cut(s) 80
BspANI GGCC 3 cut(s) 438, 499, 505
BspLI GGNNCC 7 cut(s) 6, 22, 76, 404, 438, 478, 506
BspMAI CTGCAG 1 cut(s) 106
BspPI GGATC 5 cut(s) 12, 15, 28, 397, 410
BspTNI GGTCTC 1 cut(s) 155
BsrDI GCAATG 2 cut(s) 26, 140
BssECI CCNNGG 2 cut(s) 398, 500
BssMI GATC 4 cut(s) 4, 20, 118, 402
BssT1I CCWWGG 2 cut(s) 398, 500
Bst6I CTCTTC 2 cut(s) 182, 515
BstBAI YACGTR 1 cut(s) 433
BstC8I GCNNGC 2 cut(s) 154, 490
BstDEI CTNAG 2 cut(s) 85, 381
BstDSI CCRYGG 1 cut(s) 398
BstF5I GGATG 1 cut(s) 335
BstKTI GATC 4 cut(s) 7, 23, 121, 405
BstMAI GTCTC 2 cut(s) 155, 533
BstMBI GATC 4 cut(s) 4, 20, 118, 402
BstMWI GCNNNNNNNGC 2 cut(s) 139, 332
BstSFI CTRYAG 2 cut(s) 102, 342
BstSLI GKGCMC 1 cut(s) 440
BstV1I GCAGC 3 cut(s) 88, 110, 126
BstX2I RGATCY 3 cut(s) 4, 20, 402
BstXI CCANNNNNNTGG 1 cut(s) 473
BstYI RGATCY 3 cut(s) 4, 20, 402
BsuRI GGCC 3 cut(s) 438, 499, 505
BtgI CCRYGG 1 cut(s) 398
BtgZI GCGATG 1 cut(s) 261
BtsCI GGATG 1 cut(s) 335
Cac8I GCNNGC 2 cut(s) 154, 490
Cfr13I GGNCC 3 cut(s) 436, 437, 504
CseI GACGC 1 cut(s) 139
CviAII CATG 2 cut(s) 399, 467
DdeI CTNAG 2 cut(s) 85, 381
DpnI GATC 4 cut(s) 6, 22, 120, 404
DpnII GATC 4 cut(s) 4, 20, 118, 402
DriI GACNNNNNGTC 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 182, 515
Eam1105I GACNNNNNGTC 1 cut(s) 135
EarI CTCTTC 2 cut(s) 182, 515
Eco130I CCWWGG 2 cut(s) 398, 500
Eco24I GRGCYC 1 cut(s) 440
Eco31I GGTCTC 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 315
Eco72I CACGTG 1 cut(s) 433
Eco88I CYCGRG 1 cut(s) 184
EcoO109I RGGNCCY 1 cut(s) 504
EcoT14I CCWWGG 2 cut(s) 398, 500
EcoT38I GRGCYC 1 cut(s) 440
ErhI CCWWGG 2 cut(s) 398, 500
FaeI CATG 2 cut(s) 402, 470
FatI CATG 2 cut(s) 398, 466
FauI CCCGC 1 cut(s) 87
FauNDI CATATG 2 cut(s) 278, 322
FblI GTMKAC 1 cut(s) 235
Fnu4HI GCNGC 3 cut(s) 99, 102, 115
FokI GGATG 1 cut(s) 322
FriOI GRGCYC 1 cut(s) 440
Fsp4HI GCNGC 3 cut(s) 99, 102, 115
FspBI CTAG 1 cut(s) 122
GluI GCNGC 3 cut(s) 99, 102, 115
HaeIII GGCC 3 cut(s) 438, 499, 505
HapII CCGG 1 cut(s) 493
HgaI GACGC 1 cut(s) 139
Hin1II CATG 2 cut(s) 402, 470
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 2 cut(s) 38, 182
HpaII CCGG 1 cut(s) 493
HphI GGTGA 2 cut(s) 56, 261
Hpy166II GTNNAC 1 cut(s) 236
Hpy188I TCNGA 1 cut(s) 539
Hpy188III TCNNGA 4 cut(s) 8, 186, 293, 514
Hpy8I GTNNAC 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 290
HpyCH4IV ACGT 1 cut(s) 432
HpyCH4V TGCA 4 cut(s) 98, 104, 224, 326
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 332
HpyF3I CTNAG 2 cut(s) 85, 381
HpySE526I ACGT 1 cut(s) 432
Hsp92II CATG 2 cut(s) 402, 470
Kzo9I GATC 4 cut(s) 4, 20, 118, 402
LpnPI CCDG 6 cut(s) 21, 96, 265, 306, 330, 506
Lsp1109I GCAGC 3 cut(s) 88, 110, 126
LweI GCATC 2 cut(s) 238, 344
MaeI CTAG 1 cut(s) 122
MaeII ACGT 1 cut(s) 432
MaeIII GTNAC 1 cut(s) 316
MalI GATC 4 cut(s) 6, 22, 120, 404
MboI GATC 4 cut(s) 4, 20, 118, 402
MboII GAAGA 2 cut(s) 169, 502
MflI RGATCY 3 cut(s) 4, 20, 402
MhlI GDGCHC 1 cut(s) 440
MluCI AATT 4 cut(s) 190, 287, 301, 366
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 6 cut(s) 185, 205, 349, 420, 489, 518
MseI TTAA 1 cut(s) 54
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 1 cut(s) 493
MwoI GCNNNNNNNGC 2 cut(s) 139, 332
NcoI CCATGG 1 cut(s) 398
NdeI CATATG 2 cut(s) 278, 322
NdeII GATC 4 cut(s) 4, 20, 118, 402
NlaIII CATG 2 cut(s) 402, 470
NlaIV GGNNCC 7 cut(s) 6, 22, 76, 404, 438, 478, 506
NmuCI GTSAC 1 cut(s) 316
PaeR7I CTCGAG 1 cut(s) 184
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 3 cut(s) 100, 103, 116
PleI GAGTC 1 cut(s) 176
PmaCI CACGTG 1 cut(s) 433
PmlI CACGTG 1 cut(s) 433
PpsI GAGTC 1 cut(s) 176
Ppu21I YACGTR 1 cut(s) 433
PspCI CACGTG 1 cut(s) 433
PspN4I GGNNCC 7 cut(s) 6, 22, 76, 404, 438, 478, 506
PspOMI GGGCCC 1 cut(s) 436
PspPI GGNCC 3 cut(s) 436, 437, 504
PstI CTGCAG 1 cut(s) 106
PsuI RGATCY 3 cut(s) 4, 20, 402
PvuII CAGCTG 1 cut(s) 101
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 3 cut(s) 99, 102, 115
Sau3AI GATC 4 cut(s) 4, 20, 118, 402
Sau96I GGNCC 3 cut(s) 436, 437, 504
SchI GAGTC 1 cut(s) 176
SduI GDGCHC 1 cut(s) 440
SetI ASST 5 cut(s) 103, 154, 374, 435, 523
SfaNI GCATC 2 cut(s) 238, 344
SfcI CTRYAG 2 cut(s) 102, 342
Sfr274I CTCGAG 1 cut(s) 184
SlaI CTCGAG 1 cut(s) 184
SmlI CTYRAG 2 cut(s) 184, 514
SmoI CTYRAG 2 cut(s) 184, 514
Sse9I AATT 4 cut(s) 190, 287, 301, 366
SsiI CCGC 1 cut(s) 80
SspMI CTAG 1 cut(s) 122
StyI CCWWGG 2 cut(s) 398, 500
TaiI ACGT 1 cut(s) 435
TaqI TCGA 2 cut(s) 180, 185
TasI AATT 4 cut(s) 190, 287, 301, 366
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 3 cut(s) 98, 101, 114
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 1 cut(s) 74
XapI RAATTY 2 cut(s) 190, 287
XhoI CTCGAG 1 cut(s) 184
XmiI GTMKAC 1 cut(s) 235
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.