Rw3G002270

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000230
Physical Location & Seq
Forward (+)
1996645 .. 1998339
1695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G002270.1

Sequence Viewer

Length: 1254 bp
ATGGCTGTCCTATGTCCTTTACACAAAAATAATTATACTATGGCTGTCATCACCCTTTTTTTCTTTCATCTCATTTATAACTATGCTACAGTAGCAACCAATATCAATGGTGGCTTTAGCGCTCATCTTATCCGAAAAAATTCTCCAAAATCACCATTGCATCAACACAAAAACAATAAATTTTTTCGACGGTTGATGGGTCCAGACACGCCAGGATCACCAATGCAATTCGATGCAGGCAGCGATCTACTATGGACGCAATGTCAGCCTTGTCAAAGTTGCTACAAGAGCAACTTTGGCATTTTTGACCCGAGAAAATCCTCAACTCATAAGAACATTACTTGTCGGTCAAGAGACTGTAGACTCCTCGGCCCGTTCTATGCACATGACTATTGTATACAAAAACCTACGGGAAATTGTGTTTACAGCTACGAGTATCAAGAAGGGACTGGCTCAATGGGTCTATTGGGTAAAGAAACAGTTACCTTGACATCCACTACAGGTAAAGTTGTTGCCCTAAAAGATATTATTTTTGGGTGTGGGTATAAAAACAATGAATCTATTTCAACTGGAAATATAATGGGAATGATTGGGCTTGGACGTGGGCCATTATCATTGATTTCTCAAATTGCTCCCTATGTTGGAGGCAAAAGATTCGCTTATTGTTTGGTGCAAGATCCCAACATCCAAAGCAAGATCTATTTCGGGAATGGGAGTGAAGTTTTGGGTGAAGGAGTGGTGACAACCCCTATGGTCGATGTTGAACCAGACGAGACGAGTTATCTTATCACAGTATTAGGAATTACCATCGAAAATGAGTTTCTTTCTTTTAACTCAACTGGGACTTTACTCAAGAAAGGTAACATGAATGTTGATAGCGGTACATCTACGTCACGTTTACCACAAGACTTTTTTGACCGGATGGTAACTCAGCTAAAAAAGGTAGTTAAATTGGAGTCATTCATATATACCAAGGAGATGATGAGTCTCCTATGCTTTAACTCCACGACGCCTCCAAAATTACCACCAATGGTTTTCCATTTTGAGGGTGGTAGCAAACTGCCAGTGGCGATGGACCAATTATTTTCTGAAGAAATGCCTGGGGCATTTTGCTTAGCAATTTCAAACATAACTAATGGGTATCAAGGTTTTTTCGGAGGTTCTCTACAGACAAATCTCTTGATTGGCTTTGACTCTGATAAAAAAGTGATATCCTTCAAGCCAACTAATTGCGCAGACTTTAACAAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

417

Amino Acids

46.09

Weight (kDa)

8.57

Isoelectric Point (pI)

32.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 75 - 237 9.7e-43 Xylanase inhibitor N-terminal
Asp PF00026 76 - 406 7.6e-08 Eukaryotic aspartyl protease
TAXi_C PF14541 261 - 407 7e-19 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 78
Acc16I TGCGCA 1 cut(s) 1234
AccI GTMKAC 2 cut(s) 361, 397
AciI CCGC 1 cut(s) 879
AclWI GGATC 2 cut(s) 223, 671
AcsI RAATTY 2 cut(s) 139, 179
AcuI CTGAAG 1 cut(s) 1110
AcyI GRCGYC 1 cut(s) 1010
AfaI GTAC 1 cut(s) 883
AfeI AGCGCT 1 cut(s) 121
AfiI CCNNNNNNNGG 2 cut(s) 641, 1045
AgsI TTSAA 4 cut(s) 567, 764, 1125, 1219
AhdI GACNNNNNGTC 1 cut(s) 261
AjiI CACGTC 1 cut(s) 602
AjnI CCWGG 2 cut(s) 211, 1099
AluBI AGCT 2 cut(s) 429, 934
AluI AGCT 2 cut(s) 429, 934
Alw26I GTCTC 3 cut(s) 348, 767, 992
AlwI GGATC 2 cut(s) 223, 671
Ama87I CYCGRG 1 cut(s) 310
Aor51HI AGCGCT 1 cut(s) 121
AoxI GGCC 2 cut(s) 370, 605
ApeKI GCWGC 1 cut(s) 240
ApoI RAATTY 2 cut(s) 139, 179
Asp700I GAANNNNTTC 1 cut(s) 139
AspLEI GCGC 2 cut(s) 122, 1235
AspS9I GGNCC 4 cut(s) 200, 371, 605, 1075
AsuHPI GGTGA 5 cut(s) 43, 144, 210, 740, 751
AvaI CYCGRG 1 cut(s) 310
AvaII GGWCC 2 cut(s) 200, 1075
BbvI GCAGC 1 cut(s) 252
BccI CCATC 4 cut(s) 190, 815, 916, 1066
BcgI CGANNNNNNTGC 2 cut(s) 637, 671
BciT130I CCWGG 2 cut(s) 213, 1101
BcoDI GTCTC 3 cut(s) 348, 767, 992
BfmI CTRYAG 4 cut(s) 87, 358, 498, 1166
BfoI RGCGCY 1 cut(s) 123
BglII AGATCT 1 cut(s) 696
BisI GCNGC 1 cut(s) 241
BlpI GCTNAGC 1 cut(s) 1114
BlsI GCNGC 1 cut(s) 242
Bme1390I CCNGG 2 cut(s) 213, 1101
Bme18I GGWCC 2 cut(s) 200, 1075
BmeRI GACNNNNNGTC 1 cut(s) 261
BmeT110I CYCGRG 1 cut(s) 310
BmgBI CACGTC 1 cut(s) 602
BmgT120I GGNCC 4 cut(s) 200, 371, 605, 1075
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 2 cut(s) 213, 1101
BmrI ACTGGG 1 cut(s) 849
BmsI GCATC 2 cut(s) 169, 223
BmuI ACTGGG 1 cut(s) 849
Bpu1102I GCTNAGC 1 cut(s) 1114
BpuEI CTTGAG 1 cut(s) 836
BsaHI GRCGYC 1 cut(s) 1010
BsaJI CCNNGG 3 cut(s) 367, 972, 1100
BsaWI WCCGGW 1 cut(s) 918
BsaXI ACNNNNNCTCC 2 cut(s) 997, 1027
Bsc4I CCNNNNNNNGG 2 cut(s) 641, 1045
Bse1I ACTGG 4 cut(s) 454, 574, 844, 1064
Bse3DI GCAATG 2 cut(s) 155, 266
BseBI CCWGG 2 cut(s) 213, 1101
BseDI CCNNGG 3 cut(s) 367, 972, 1100
BseGI GGATG 3 cut(s) 491, 684, 927
BseLI CCNNNNNNNGG 2 cut(s) 641, 1045
BseMI GCAATG 2 cut(s) 155, 266
BseMII CTCAG 1 cut(s) 944
BseNI ACTGG 4 cut(s) 454, 574, 844, 1064
BseRI GAGGAG 1 cut(s) 356
BseXI GCAGC 1 cut(s) 252
BshFI GGCC 2 cut(s) 372, 607
BsiHKCI CYCGRG 1 cut(s) 310
BsiSI CCGG 1 cut(s) 919
BslFI GGGAC 2 cut(s) 460, 856
BslI CCNNNNNNNGG 2 cut(s) 641, 1045
BsmAI GTCTC 3 cut(s) 348, 767, 992
BsmBI CGTCTC 1 cut(s) 767
BsmFI GGGAC 2 cut(s) 460, 856
BsnI GGCC 2 cut(s) 372, 607
BsoBI CYCGRG 1 cut(s) 310
Bsp143I GATC 4 cut(s) 215, 244, 676, 696
Bsp1720I GCTNAGC 1 cut(s) 1114
BspACI CCGC 1 cut(s) 879
BspANI GGCC 2 cut(s) 372, 607
BspCNI CTCAG 1 cut(s) 943
BspLI GGNNCC 1 cut(s) 201
BspPI GGATC 2 cut(s) 223, 671
BsrDI GCAATG 2 cut(s) 155, 266
BsrI ACTGG 4 cut(s) 454, 574, 844, 1064
BssECI CCNNGG 3 cut(s) 367, 972, 1100
BssMI GATC 4 cut(s) 215, 244, 676, 696
BssNAI GTATAC 1 cut(s) 398
BssNI GRCGYC 1 cut(s) 1010
BssT1I CCWWGG 1 cut(s) 972
Bst1107I GTATAC 1 cut(s) 398
Bst2UI CCWGG 2 cut(s) 213, 1101
Bst4CI ACNGT 5 cut(s) 91, 192, 359, 481, 793
BstACI GRCGYC 1 cut(s) 1010
BstC8I GCNNGC 1 cut(s) 238
BstDEI CTNAG 2 cut(s) 930, 1114
BstF5I GGATG 3 cut(s) 491, 684, 927
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 2 cut(s) 122, 1235
BstKTI GATC 4 cut(s) 218, 247, 679, 699
BstMAI GTCTC 3 cut(s) 348, 767, 992
BstMBI GATC 4 cut(s) 215, 244, 676, 696
BstMWI GCNNNNNNNGC 4 cut(s) 92, 265, 288, 297
BstNI CCWGG 2 cut(s) 213, 1101
BstSCI CCNGG 2 cut(s) 211, 1099
BstSFI CTRYAG 4 cut(s) 87, 358, 498, 1166
BstV1I GCAGC 1 cut(s) 252
BstX2I RGATCY 2 cut(s) 676, 696
BstYI RGATCY 2 cut(s) 676, 696
BstZ17I GTATAC 1 cut(s) 398
BsuRI GGCC 2 cut(s) 372, 607
BtgZI GCGATG 1 cut(s) 1085
BtrI CACGTC 1 cut(s) 602
BtsCI GGATG 3 cut(s) 491, 684, 927
BtsIMutI CAGTG 1 cut(s) 1071
Cac8I GCNNGC 1 cut(s) 238
CfoI GCGC 2 cut(s) 122, 1235
Cfr13I GGNCC 4 cut(s) 200, 371, 605, 1075
CseI GACGC 2 cut(s) 265, 1018
Csp6I GTAC 1 cut(s) 882
CviAII CATG 2 cut(s) 386, 865
CviQI GTAC 1 cut(s) 882
DdeI CTNAG 2 cut(s) 930, 1114
DpnI GATC 4 cut(s) 217, 246, 678, 698
DpnII GATC 4 cut(s) 215, 244, 676, 696
DriI GACNNNNNGTC 1 cut(s) 261
Eam1105I GACNNNNNGTC 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 972
Eco32I GATATC 1 cut(s) 1212
Eco47I GGWCC 2 cut(s) 200, 1075
Eco47III AGCGCT 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 1110
Eco88I CYCGRG 1 cut(s) 310
EcoRII CCWGG 2 cut(s) 211, 1099
EcoRV GATATC 1 cut(s) 1212
EcoT14I CCWWGG 1 cut(s) 972
ErhI CCWWGG 1 cut(s) 972
Esp3I CGTCTC 1 cut(s) 767
FaeI CATG 2 cut(s) 389, 868
FalI AAGNNNNNCTT 4 cut(s) 278, 310, 643, 675
FaqI GGGAC 2 cut(s) 460, 856
FatI CATG 2 cut(s) 385, 864
FblI GTMKAC 2 cut(s) 361, 397
Fnu4HI GCNGC 1 cut(s) 241
FokI GGATG 3 cut(s) 478, 671, 934
Fsp4HI GCNGC 1 cut(s) 241
FspI TGCGCA 1 cut(s) 1234
GlaI GCGC 2 cut(s) 121, 1234
GluI GCNGC 1 cut(s) 241
HaeII RGCGCY 1 cut(s) 123
HaeIII GGCC 2 cut(s) 372, 607
HapII CCGG 1 cut(s) 919
HgaI GACGC 2 cut(s) 265, 1018
HhaI GCGC 2 cut(s) 122, 1235
Hin1I GRCGYC 1 cut(s) 1010
Hin1II CATG 2 cut(s) 389, 868
Hin6I GCGC 2 cut(s) 120, 1233
HinP1I GCGC 2 cut(s) 120, 1233
HinfI GANTC 6 cut(s) 363, 557, 654, 956, 985, 1193
HpaII CCGG 1 cut(s) 919
HphI GGTGA 5 cut(s) 43, 144, 210, 740, 751
Hpy166II GTNNAC 4 cut(s) 362, 398, 424, 899
Hpy188I TCNGA 4 cut(s) 134, 1090, 1157, 1198
Hpy188III TCNNGA 6 cut(s) 203, 351, 440, 706, 853, 1180
Hpy8I GTNNAC 4 cut(s) 362, 398, 424, 899
Hpy99I CGWCG 2 cut(s) 192, 1012
HpyAV CCTTC 3 cut(s) 437, 725, 1225
HpyCH4III ACNGT 5 cut(s) 91, 192, 359, 481, 793
HpyCH4IV ACGT 3 cut(s) 601, 890, 895
HpyCH4V TGCA 5 cut(s) 160, 226, 236, 383, 673
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 265, 288, 297
HpyF3I CTNAG 2 cut(s) 930, 1114
HpySE526I ACGT 3 cut(s) 601, 890, 895
Hsp92I GRCGYC 1 cut(s) 1010
Hsp92II CATG 2 cut(s) 389, 868
HspAI GCGC 2 cut(s) 120, 1233
Kzo9I GATC 4 cut(s) 215, 244, 676, 696
LmnI GCTCC 1 cut(s) 637
Lsp1109I GCAGC 1 cut(s) 252
LweI GCATC 2 cut(s) 169, 223
MaeII ACGT 3 cut(s) 601, 890, 895
MaeIII GTNAC 5 cut(s) 481, 739, 860, 891, 925
MalI GATC 4 cut(s) 217, 246, 678, 698
MboI GATC 4 cut(s) 215, 244, 676, 696
MboII GAAGA 1 cut(s) 1103
MflI RGATCY 2 cut(s) 676, 696
MlyI GAGTC 4 cut(s) 357, 965, 994, 1187
MmeI TCCRAC 1 cut(s) 622
MnlI CCTC 6 cut(s) 331, 377, 638, 1023, 1039, 1151
MroXI GAANNNNTTC 1 cut(s) 139
MseI TTAA 4 cut(s) 831, 948, 999, 1242
MspI CCGG 1 cut(s) 919
MspR9I CCNGG 2 cut(s) 213, 1101
MvaI CCWGG 2 cut(s) 213, 1101
MwoI GCNNNNNNNGC 4 cut(s) 92, 265, 288, 297
NdeII GATC 4 cut(s) 215, 244, 676, 696
NlaIII CATG 2 cut(s) 389, 868
NlaIV GGNNCC 1 cut(s) 201
NmeAIII GCCGAG 1 cut(s) 348
NmuCI GTSAC 2 cut(s) 739, 891
NsbI TGCGCA 1 cut(s) 1234
PdmI GAANNNNTTC 1 cut(s) 139
PfeI GAWTC 2 cut(s) 557, 654
PkrI GCNGC 1 cut(s) 242
PleI GAGTC 4 cut(s) 357, 964, 993, 1187
PpsI GAGTC 4 cut(s) 357, 964, 993, 1187
PsiI TTATAA 1 cut(s) 78
Psp6I CCWGG 2 cut(s) 211, 1099
PspGI CCWGG 2 cut(s) 211, 1099
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 4 cut(s) 200, 371, 605, 1075
PsuI RGATCY 2 cut(s) 676, 696
RsaI GTAC 1 cut(s) 883
RsaNI GTAC 1 cut(s) 882
SaqAI TTAA 4 cut(s) 831, 948, 999, 1242
SatI GCNGC 1 cut(s) 241
Sau3AI GATC 4 cut(s) 215, 244, 676, 696
Sau96I GGNCC 4 cut(s) 200, 371, 605, 1075
SchI GAGTC 4 cut(s) 357, 965, 994, 1187
ScrFI CCNGG 2 cut(s) 213, 1101
SfaNI GCATC 2 cut(s) 169, 223
SfcI CTRYAG 4 cut(s) 87, 358, 498, 1166
SinI GGWCC 2 cut(s) 200, 1075
SmlI CTYRAG 1 cut(s) 851
SmoI CTYRAG 1 cut(s) 851
SsiI CCGC 1 cut(s) 879
StyD4I CCNGG 2 cut(s) 211, 1099
StyI CCWWGG 1 cut(s) 972
TaaI ACNGT 5 cut(s) 91, 192, 359, 481, 793
TaiI ACGT 3 cut(s) 604, 893, 898
TaqI TCGA 4 cut(s) 187, 231, 756, 810
TaqII GACCGA 1 cut(s) 336
TfiI GAWTC 2 cut(s) 557, 654
Tru1I TTAA 4 cut(s) 831, 948, 999, 1242
Tru9I TTAA 4 cut(s) 831, 948, 999, 1242
TscAI CASTG 1 cut(s) 1071
TseFI GTSAC 2 cut(s) 739, 891
TseI GCWGC 1 cut(s) 240
Tsp45I GTSAC 2 cut(s) 739, 891
TspDTI ATGAA 4 cut(s) 56, 570, 881, 952
TspRI CASTG 1 cut(s) 1071
VpaK11BI GGWCC 2 cut(s) 200, 1075
XapI RAATTY 2 cut(s) 139, 179
XcmI CCANNNNNNNNNTGG 1 cut(s) 1046
XmiI GTMKAC 2 cut(s) 361, 397
XmnI GAANNNNTTC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.