Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000230

Physical Location & Seq

Genomic Coordinates Forward (+)

30701965 .. 30702651

Gene Structure 687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023985

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCGACGCCATATCATTCGCTTTCCACCATTGCAAGTTCGATTGTTATTATCTCTCTCTTAGTTATCTCTCACGCACAAGATAATGTCCCTCACCATGTCGATGTAATTAGCCTCAACATGATCCATCATGACACACCATCTTCTCCCTTATACAATTCGTCGTTAACTAGTTGGCAACGAGTAAGCAATGCCTTGCGACGTTCACATGATCGCATCAACCGTTTCATCTCATCAGAAGATGAATCGCCTGATCATCTAATGTACAGCAAAGGAGAATACCTGGTGAACATATCAATCGGTACACCACCAAGACCTTTCATTGGAATTGTTGACACCGGAAGCGATCTTATATGGACACAATGCATGCCATGCAGGGAATGTTTCGAGCAAAACCCTCCTCTCTTCGATCCAGCTTCTTCATCGACTTATGGAGAGCTCTCTTGTATGTCCAACGAGTGTAATTTGCTAAGCGGAGCGGCCTCTTGTTCCAGTAATTCAAGCTCTTGTGACTATCAATATTCATATGGTGACGGGTCTCATACCACCGGAAATCTATCCCTGGACACTGTTACTTTGGATTCCACATCCATTCCCAACACTATATTTGGTTGCGGACACCATAATGGAGGAGTGTTCAGTGGGATCGAGTCAGGAATTATTGAACTAGGCCGCGGCGCTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

229

Amino Acids

24.62

Weight (kDa)

5.03

Isoelectric Point (pI)

50.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	93 - 211	3.1e-11	Eukaryotic aspartyl protease
TAXi_N	PF14543	94 - 227	3.1e-41	Xylanase inhibitor N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000230)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica	MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica	Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis	pycom12g22170
rosa_chinensis	RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata	RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora	Rmu_sc0034928.1_g000007
rosa_roxburghii	Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa	Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha	Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana	Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	479
AccII	CGCG	1 cut(s)	675
AciI	CCGC	5 cut(s)	474, 479, 615, 673, 675
AclWI	GGATC	3 cut(s)	118, 404, 653
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	2 cut(s)	266, 304
AfiI	CCNNNNNNNGG	1 cut(s)	323
AgsI	TTSAA	2 cut(s)	501, 665
AhlI	ACTAGT	1 cut(s)	170
AjnI	CCWGG	2 cut(s)	282, 561
AluBI	AGCT	3 cut(s)	416, 439, 504
AluI	AGCT	3 cut(s)	416, 439, 504
Alw21I	GWGCWC	1 cut(s)	441
Alw26I	GTCTC	1 cut(s)	543
AlwI	GGATC	3 cut(s)	118, 404, 653
AoxI	GGCC	2 cut(s)	480, 670
AspLEI	GCGC	1 cut(s)	680
AsuHPI	GGTGA	3 cut(s)	86, 298, 542
BanII	GRGCYC	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	441
BccI	CCATC	2 cut(s)	135, 148
BciT130I	CCWGG	2 cut(s)	284, 563
BclI	TGATCA	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	543
BcuI	ACTAGT	1 cut(s)	170
BfaI	CTAG	2 cut(s)	171, 668
BfoI	RGCGCY	1 cut(s)	681
BisI	GCNGC	3 cut(s)	480, 673, 676
BlpI	GCTNAGC	1 cut(s)	470
BlsI	GCNGC	3 cut(s)	481, 674, 677
Bme1390I	CCNGG	2 cut(s)	284, 563
BmrFI	CCNGG	2 cut(s)	284, 563
BmsI	GCATC	1 cut(s)	225
Bpu1102I	GCTNAGC	1 cut(s)	470
BsaHI	GRCGYC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	543
BsaJI	CCNNGG	2 cut(s)	561, 673
BsaWI	WCCGGW	2 cut(s)	338, 548
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse1I	ACTGG	1 cut(s)	492
Bse3DI	GCAATG	2 cut(s)	30, 196
BseBI	CCWGG	2 cut(s)	284, 563
BseDI	CCNNGG	2 cut(s)	561, 673
BseGI	GGATG	1 cut(s)	587
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMI	GCAATG	2 cut(s)	30, 196
BseNI	ACTGG	1 cut(s)	492
BseRI	GAGGAG	2 cut(s)	390, 645
Bsh1236I	CGCG	1 cut(s)	675
BshFI	GGCC	2 cut(s)	482, 672
BsiHKAI	GWGCWC	1 cut(s)	441
BsiSI	CCGG	2 cut(s)	339, 549
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	323
BsmAI	GTCTC	1 cut(s)	543
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	2 cut(s)	482, 672
Bso31I	GGTCTC	1 cut(s)	543
Bsp1286I	GDGCHC	1 cut(s)	441
Bsp1407I	TGTACA	1 cut(s)	264
Bsp143I	GATC	6 cut(s)	123, 211, 253, 346, 409, 645
Bsp1720I	GCTNAGC	1 cut(s)	470
BspACI	CCGC	5 cut(s)	474, 479, 615, 673, 675
BspANI	GGCC	2 cut(s)	482, 672
BspFNI	CGCG	1 cut(s)	675
BspHI	TCATGA	1 cut(s)	130
BspPI	GGATC	3 cut(s)	118, 404, 653
BspTNI	GGTCTC	1 cut(s)	543
BsrBI	CCGCTC	1 cut(s)	479
BsrDI	GCAATG	2 cut(s)	30, 196
BsrGI	TGTACA	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	492
BssECI	CCNNGG	2 cut(s)	561, 673
BssMI	GATC	6 cut(s)	123, 211, 253, 346, 409, 645
BssNI	GRCGYC	1 cut(s)	8
Bst2UI	CCWGG	2 cut(s)	284, 563
Bst4CI	ACNGT	2 cut(s)	224, 571
Bst6I	CTCTTC	1 cut(s)	410
BstACI	GRCGYC	1 cut(s)	8
BstAPI	GCANNNNNTGC	1 cut(s)	372
BstAUI	TGTACA	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	368
BstDEI	CTNAG	2 cut(s)	61, 470
BstDSI	CCRYGG	1 cut(s)	673
BstF5I	GGATG	1 cut(s)	587
BstFNI	CGCG	1 cut(s)	675
BstH2I	RGCGCY	1 cut(s)	681
BstHHI	GCGC	1 cut(s)	680
BstKTI	GATC	6 cut(s)	126, 214, 256, 349, 412, 648
BstMAI	GTCTC	1 cut(s)	543
BstMBI	GATC	6 cut(s)	123, 211, 253, 346, 409, 645
BstMWI	GCNNNNNNNGC	1 cut(s)	372
BstNI	CCWGG	2 cut(s)	284, 563
BstNSI	RCATGY	1 cut(s)	370
BstSCI	CCNGG	2 cut(s)	282, 561
BstUI	CGCG	1 cut(s)	675
BsuRI	GGCC	2 cut(s)	482, 672
BtgI	CCRYGG	1 cut(s)	673
BtsCI	GGATG	1 cut(s)	587
BtsIMutI	CAGTG	2 cut(s)	567, 646
Cac8I	GCNNGC	1 cut(s)	368
CciI	TCATGA	1 cut(s)	130
CfoI	GCGC	1 cut(s)	680
Cfr42I	CCGCGG	1 cut(s)	676
CseI	GACGC	1 cut(s)	16
CsiI	ACCWGGT	1 cut(s)	282
Csp6I	GTAC	2 cut(s)	265, 303
CviAII	CATG	6 cut(s)	98, 121, 131, 209, 367, 372
CviJI	RGCY	6 cut(s)	114, 416, 439, 482, 504, 672
CviKI_1	RGCY	6 cut(s)	114, 416, 439, 482, 504, 672
CviQI	GTAC	2 cut(s)	265, 303
DdeI	CTNAG	2 cut(s)	61, 470
DpnI	GATC	6 cut(s)	125, 213, 255, 348, 411, 647
DpnII	GATC	6 cut(s)	123, 211, 253, 346, 409, 645
Eam1104I	CTCTTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	410
Ecl136II	GAGCTC	1 cut(s)	439
Eco24I	GRGCYC	1 cut(s)	441
Eco31I	GGTCTC	1 cut(s)	543
Eco53kI	GAGCTC	1 cut(s)	439
EcoICRI	GAGCTC	1 cut(s)	439
EcoRII	CCWGG	2 cut(s)	282, 561
EcoT22I	ATGCAT	1 cut(s)	368
EcoT38I	GRGCYC	1 cut(s)	441
FaeI	CATG	6 cut(s)	101, 124, 134, 212, 370, 375
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	6 cut(s)	97, 120, 130, 208, 366, 371
FauNDI	CATATG	1 cut(s)	526
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	3 cut(s)	480, 673, 676
FokI	GGATG	1 cut(s)	574
FriOI	GRGCYC	1 cut(s)	441
Fsp4HI	GCNGC	3 cut(s)	480, 673, 676
FspBI	CTAG	2 cut(s)	171, 668
GlaI	GCGC	1 cut(s)	679
GluI	GCNGC	3 cut(s)	480, 673, 676
HaeII	RGCGCY	1 cut(s)	681
HaeIII	GGCC	2 cut(s)	482, 672
HapII	CCGG	2 cut(s)	339, 549
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	680
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	6 cut(s)	101, 124, 134, 212, 370, 375
Hin6I	GCGC	1 cut(s)	678
HinP1I	GCGC	1 cut(s)	678
HincII	GTYRAC	2 cut(s)	168, 334
HindII	GTYRAC	2 cut(s)	168, 334
HinfI	GANTC	3 cut(s)	245, 581, 650
HpaI	GTTAAC	1 cut(s)	168
HpaII	CCGG	2 cut(s)	339, 549
HphI	GGTGA	3 cut(s)	86, 298, 542
Hpy166II	GTNNAC	5 cut(s)	168, 206, 289, 305, 334
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	2 cut(s)	131, 654
Hpy8I	GTNNAC	5 cut(s)	168, 206, 289, 305, 334
Hpy99I	CGWCG	3 cut(s)	10, 166, 204
HpyCH4III	ACNGT	2 cut(s)	224, 571
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	3 cut(s)	35, 366, 375
HpyF10VI	GCNNNNNNNGC	1 cut(s)	372
HpyF3I	CTNAG	2 cut(s)	61, 470
HpySE526I	ACGT	1 cut(s)	202
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	6 cut(s)	101, 124, 134, 212, 370, 375
HspAI	GCGC	1 cut(s)	678
Ksp22I	TGATCA	1 cut(s)	253
KspAI	GTTAAC	1 cut(s)	168
KspI	CCGCGG	1 cut(s)	676
Kzo9I	GATC	6 cut(s)	123, 211, 253, 346, 409, 645
LmnI	GCTCC	1 cut(s)	476
LweI	GCATC	1 cut(s)	225
MabI	ACCWGGT	1 cut(s)	282
MaeI	CTAG	2 cut(s)	171, 668
MaeII	ACGT	1 cut(s)	202
MaeIII	GTNAC	3 cut(s)	509, 530, 571
MalI	GATC	6 cut(s)	125, 213, 255, 348, 411, 647
MbiI	CCGCTC	1 cut(s)	479
MboI	GATC	6 cut(s)	123, 211, 253, 346, 409, 645
MboII	GAAGA	4 cut(s)	135, 251, 397, 411
MhlI	GDGCHC	1 cut(s)	441
MluCI	AATT	6 cut(s)	108, 157, 327, 463, 496, 657
MlyI	GAGTC	1 cut(s)	659
MmeI	TCCRAC	1 cut(s)	477
MnlI	CCTC	6 cut(s)	102, 125, 408, 411, 493, 623
Mph1103I	ATGCAT	1 cut(s)	368
MseI	TTAA	1 cut(s)	167
MslI	CAYNNNNRTG	2 cut(s)	102, 624
MspA1I	CMGCKG	1 cut(s)	675
MspI	CCGG	2 cut(s)	339, 549
MspR9I	CCNGG	2 cut(s)	284, 563
MvaI	CCWGG	2 cut(s)	284, 563
MvnI	CGCG	1 cut(s)	675
MwoI	GCNNNNNNNGC	1 cut(s)	372
NdeI	CATATG	1 cut(s)	526
NdeII	GATC	6 cut(s)	123, 211, 253, 346, 409, 645
NlaIII	CATG	6 cut(s)	101, 124, 134, 212, 370, 375
NmuCI	GTSAC	2 cut(s)	509, 530
NsiI	ATGCAT	1 cut(s)	368
NspI	RCATGY	1 cut(s)	370
PaeI	GCATGC	1 cut(s)	370
PagI	TCATGA	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	220
PfeI	GAWTC	2 cut(s)	245, 581
PkrI	GCNGC	3 cut(s)	481, 674, 677
PleI	GAGTC	1 cut(s)	658
PpsI	GAGTC	1 cut(s)	658
Psp124BI	GAGCTC	1 cut(s)	441
Psp6I	CCWGG	2 cut(s)	282, 561
PspGI	CCWGG	2 cut(s)	282, 561
RsaI	GTAC	2 cut(s)	266, 304
RsaNI	GTAC	2 cut(s)	265, 303
RseI	CAYNNNNRTG	2 cut(s)	102, 624
SacI	GAGCTC	1 cut(s)	441
SacII	CCGCGG	1 cut(s)	676
SaqAI	TTAA	1 cut(s)	167
SatI	GCNGC	3 cut(s)	480, 673, 676
Sau3AI	GATC	6 cut(s)	123, 211, 253, 346, 409, 645
SchI	GAGTC	1 cut(s)	659
ScrFI	CCNGG	2 cut(s)	284, 563
SduI	GDGCHC	1 cut(s)	441
SetI	ASST	6 cut(s)	205, 285, 319, 418, 441, 506
SexAI	ACCWGGT	1 cut(s)	282
SfaNI	GCATC	1 cut(s)	225
Sfr303I	CCGCGG	1 cut(s)	676
SgrBI	CCGCGG	1 cut(s)	676
SmiMI	CAYNNNNRTG	2 cut(s)	102, 624
SpeI	ACTAGT	1 cut(s)	170
SphI	GCATGC	1 cut(s)	370
Sse9I	AATT	6 cut(s)	108, 157, 327, 463, 496, 657
SsiI	CCGC	5 cut(s)	474, 479, 615, 673, 675
SspI	AATATT	1 cut(s)	521
SspMI	CTAG	2 cut(s)	171, 668
SstI	GAGCTC	1 cut(s)	441
StyD4I	CCNGG	2 cut(s)	282, 561
TaaI	ACNGT	2 cut(s)	224, 571
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	6 cut(s)	41, 102, 387, 408, 425, 648
TasI	AATT	6 cut(s)	108, 157, 327, 463, 496, 657
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	3 cut(s)	482, 675, 678
TfiI	GAWTC	2 cut(s)	245, 581
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TscAI	CASTG	2 cut(s)	574, 646
TseFI	GTSAC	2 cut(s)	509, 530
Tsp45I	GTSAC	2 cut(s)	509, 530
TspDTI	ATGAA	5 cut(s)	217, 258, 310, 411, 513
TspRI	CASTG	2 cut(s)	574, 646
XceI	RCATGY	1 cut(s)	370
XspI	CTAG	2 cut(s)	171, 668
Zsp2I	ATGCAT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.